Adrien Coulet Researcher at Inria, in Paris

Identifiants chercheurs

IdHAL :

coulet

ORCID :

0000-0002-1466-062X

IdRef :

134214099

Publications

Article dans une revue (28)

Enhancing clinical data warehousing with provenance data to support longitudinal analyses and large file management: The gitOmmix approach for genomic and image data Maxime Wack,Adrien Coulet,Anita Burgun,Bastien Rance Journal of Biomedical Informatics, 2025, 163, pp.104788. ⟨10.1016/j.jbi.2025.104788⟩ Article dans une revue hal-05064217v1
Efficient extraction of medication information from clinical notes: an evaluation in 2 languages Thibaut Fabacher,Erik-Andre Sauleau,Emmanuelle Arcay,Bineta Faye,Maxime Alteret al. Journal of the American Medical Informatics Association, 2025, pp.ocaf113. ⟨10.1093/jamia/ocaf113⟩ Article dans une revue hal-05375038v1
Machine learning approaches for the discovery of clinical pathways from patient data: A systematic review Lillian Muyama,Antoine Neuraz,Adrien Coulet Journal of Biomedical Informatics, 2024, pp.104746. ⟨10.1016/j.jbi.2024.104746⟩ Article dans une revue hal-04783491v1
Facilitating phenotyping from clinical texts: the medkit library Antoine Neuraz,Ghislain Vaillant,Camila Arias,Olivier Birot,Kim-Tam Huynhet al. Bioinformatics, 2024, pp.btae681. ⟨10.1093/bioinformatics/btae681⟩ Article dans une revue hal-04802917v1
Deep reinforcement learning for personalized diagnostic decision pathways using electronic health records: A comparative study on anemia and systemic lupus erythematosus Lillian Muyama,Antoine Neuraz,Adrien Coulet Artificial Intelligence in Medicine, 2024, 157, pp.102994. ⟨10.1016/j.artmed.2024.102994⟩ Article dans une revue hal-04723764v1
Technical, Ethical, Legal, and Societal Challenges With Digital Twin Systems for the Management of Chronic Diseases in Children and Young People David Drummond,Adrien Coulet Journal of Medical Internet Research, 2022, 24 (10), pp.e39698. ⟨10.2196/39698⟩ Article dans une revue hal-03835708v1
Discovering alignment relations with Graph Convolutional Networks: A biomedical case study Pierre Monnin,Chedy Raïssi,Amedeo Napoli,Adrien Coulet Semantic Web – Interoperability, Usability, Applicability, 2022, pp.1-20. ⟨10.3233/SW-210452⟩ Article dans une revue hal-03452182v1
Projet ANR (2016-2021) « PractiKPharma » : extraction, comparaison et découverte de connaissances en pharmacogénomique Pierre Monnin,Adrien Coulet 1024 : Bulletin de la Société Informatique de France, 2022, 19, pp.109 - 120. ⟨10.48556/sif.1024.19.109⟩ Article dans une revue hal-03669026v1
Étudier les mécanismes des effets indésirables des médicaments avec l'IA explicable : expériences avec la fouille de graphes de connaissances Pierre Monnin,Adrien Coulet Bulletin de l'Association Française pour l'Intelligence Artificielle, 2022 Article dans une revue hal-03669065v1
Syntax-based transfer learning for the task of biomedical relation extraction Joël Legrand,Yannick Toussaint,Chedy Raïssi,Adrien Coulet Journal of Biomedical Semantics, 2021, 12 (1), ⟨10.1186/s13326-021-00248-y⟩ Article dans une revue hal-03330823v1
L'équipe-projet HeKA Adrien Coulet,Stéphanie Allassonniere,François Angoulvant,Anita Burgun,Xiaoyi Chenet al. Bulletin de l'Association Française pour l'Intelligence Artificielle, 2021, 112, pp.29-32 Article dans une revue hal-03485904v1
Investigating ADR mechanisms with Explainable AI: a feasibility study with knowledge graph mining Emmanuel Bresso,Pierre Monnin,Cédric Bousquet,François-Elie Calvier,Ndeye-Coumba Ndiayeet al. BMC Medical Informatics and Decision Making, 2021, 21 (1), pp.171. ⟨10.1186/s12911-021-01518-6⟩ Article dans une revue hal-03240476v1
PGxCorpus, a manually annotated corpus for pharmacogenomics Joël Legrand,Romain Gogdemir,Cedric Bousquet,Kevin Dalleau,Marie-Dominique Devigneset al. Scientific Data , 2020, 7, pp.3. ⟨10.1038/s41597-019-0342-9⟩ Article dans une revue hal-02547607v1
Atherosclerotic Cardiovascular Disease Risk Prediction in Disaggregated Asian and Hispanic Subgroups Using Electronic Health Records Fatima Rodriguez,Sukyung Chung,Manuel Blum,Adrien Coulet,Sanjay Basuet al. Journal of the American Heart Association, 2019, 8 (14), ⟨10.1161/JAHA.118.011874⟩ Article dans une revue hal-02196129v1
PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison Pierre Monnin,Joël Legrand,Graziella Husson,Patrice Ringot,Andon Tchechmedjievet al. BMC Bioinformatics, 2019, 20 (S4), ⟨10.1186/s12859-019-2693-9⟩ Article dans une revue hal-02103899v1
Predicting the need for a reduced drug dose, at first prescription Adrien Coulet,Nigam H. Shah,Maxime Wack,Mohammad Chawki,Nicolas Jayet al. Scientific Reports, 2018, 8 (1), ⟨10.1038/s41598-018-33980-0⟩ Article dans une revue hal-01901566v1
Learning from biomedical linked data to suggest valid pharmacogenes Kevin Dalleau,Yassine Marzougui,Sébastien da Silva,Patrice Ringot,Ndeye Coumba Ndiayeet al. Journal of Biomedical Semantics, 2017, 8 (1), pp.16. ⟨10.1186/s13326-017-0125-1⟩ Article dans une revue hal-01511773v1
Discovering associations between adverse drug events using pattern structures and ontologies Gabin Personeni,Emmanuel Bresso,Marie-Dominique Devignes,Michel Dumontier,Malika Smaïl-Tabboneet al. Journal of Biomedical Semantics, 2017, 93, pp.539 - 546. ⟨10.1186/s13326-017-0137-x⟩ Article dans une revue hal-01576341v1
Mining Electronic Health Records to Validate Knowledge in Pharmacogenomics Adrien Coulet,Malika Smaïl-Tabbone ERCIM News, 2016, ERCIM News 104, Special theme: Tackling Big Data in the Life Sciences, 104, pp.56 Article dans une revue hal-01369501v1
Using ontology-based annotation to profile disease research Yi Liu,Adrien Coulet,Paea Lependu,Nigam H Shah Journal of the American Medical Informatics Association, 2012, 19 (e1), pp.e177-e186. ⟨10.1136/amiajnl-2011-000631⟩ Article dans une revue hal-00752101v1
Guest Editorial: The state of the art in text mining and natural language processing for pharmacogenomics Adrien Coulet,Kevin Bretonnel Cohen,Russ B. Altman Journal of Biomedical Informatics, 2012, 45 (5), pp.825-826 Article dans une revue hal-00752106v1
Semantically enabling pharmacogenomic data for the realization of personalized medicine. Matthias Samwald,Adrien Coulet,Iker Huerga,Robert L Powers,Joanne S Lucianoet al. Pharmacogenomics, 2012, 13 (2), pp.201-12. ⟨10.2217/pgs.11.179⟩ Article dans une revue hal-00752095v1
NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources Clement Jonquet,Paea Lependu,Sean Falconer,Adrien Coulet,Natalya F. Noyet al. Journal of Web Semantics, 2011, 9 (3), pp.316-324. ⟨10.1016/j.websem.2011.06.005⟩ Article dans une revue lirmm-00622155v2
Integration and publication of heterogeneous text-mined relationships on the Semantic Web Adrien Coulet,Yael Garten,Michel Dumontier,Russ B Altman,Mark A. Musenet al. Journal of Biomedical Semantics, 2011, 2 (S2), pp.S10 Article dans une revue hal-00585215v1
Recent progress in automatically extracting information from the pharmacogenomic literature. Yael Garten,Adrien Coulet,Russ B Altman Pharmacogenomics / Personalized Medicine, 2010, 11 (10), pp.1467-89. ⟨10.2217/pgs.10.136⟩ Article dans une revue inria-00549699v1
Extraction of genotype-phenotype-drug relationships from text: from entity recognition to bioinformatics application. Adrien Coulet,Nigam H. Shah,Lawrence Hunter,Chitta Barral,Russ B Altman Pacific Symposium on Biocomputing, 2010, pp.485-7 Article dans une revue inria-00549705v1
Using text to build semantic networks for pharmacogenomics Adrien Coulet,Nigam H Shah,Yael Garten,Mark A. Musen,Russ B Altman Journal of Biomedical Informatics, 2010, 43 (6), pp.1009-19. ⟨10.1016/j.jbi.2010.08.005⟩ Article dans une revue inria-00549695v1
Ontology-guided data preparation for discovering genotype-phenotype relationships Adrien Coulet,Malika Smaïl-Tabbone,Pascale Benlian,Amedeo Napoli,Marie-Dominique Devignes BMC Bioinformatics, 2008, 9 (Suppl 4), pp.S3. ⟨10.1186/1471-2105-9-S4-S3⟩ Article dans une revue inria-00338669v1

Communication dans un congrès (57)

Analysing Lightweight Large Language Models for Biomedical Named Entity Recognition on Diverse Ouput Formats Pierre Epron,Adrien Coulet,Mehwish Alam LREC 2026 - Language Resources and Evaluation Conference, May 2026, Palma De Majorque, Spain Communication dans un congrès hal-05568274v1
Clinical Data Goes MEDS? Let's OWL make sense of it Alberto Marfoglia,Jong Ho Jhee,Adrien Coulet 17th International SWAT4HCLS Conference, Semantic Web Applications and Tools for Health Care and Life Sciences, Mar 2026, Amsterdam, Netherlands. ⟨10.48550/arXiv.2601.04164⟩ Communication dans un congrès hal-05537716v1
Predicting clinical outcomes from patient care pathways represented with temporal knowledge graphs Jong Ho Jhee,Alberto Megina,Pacôme Constant Dit Beaufils,Matilde Karakachoff,Richard Redonet al. ESWC 2025 - 22nd European Semantic Web Conference, Jun 2025, Portorož, Slovenia. pp.282-300, ⟨10.1007/978-3-031-94575-5_16⟩ Communication dans un congrès hal-05136324v1
Prédiction d'événements cliniques à partir des parcours de soins de patients représentés par des graphes de connaissances temporels Jong Ho Jhee,Alberto Megina,Pacôme Constant Dit Beaufils,Matilde Karakachoff,Richard Redonet al. IC 2025 - 36e Journées Francophones d'Ingénierie des Connaissances, AFIA, Jul 2025, Dijon, France Communication dans un congrès hal-05375218v1
Build and query indexes of clinical documents with easy-to-reuse pipelines Félix Berthou,Ghilsain Vaillant,Bastien Rance,Adrien Coulet MIE 2026 - Medical Informatics Europe, EFMI, May 2026, Genova, Italy Communication dans un congrès hal-05569688v1
Results of the Ontology Alignment Evaluation Initiative 2025 Mina Abd Nikooie Pour,Eva Blomqvist,Pedro Giesteira Cotovio,Adrien Coulet,Lucas Ferrazet al. OM 2025 - Ontology Matching 2025, Nov 2025, Nara, Japan Communication dans un congrès hal-05447839v1
Comparing representations of long clinical texts for the task of patient note-identification Safa Alsaidi,Marc Vincent,Olivia Boyer,Nicolas Garcelon,Miguel Couceiroet al. CL4Health@NAACL 2025: Second Workshop on Patient-oriented Language Processing (CL4Health), at NAACL 2025, May 2025, Albuquerque, New Mexico, United States Communication dans un congrès hal-05000565v2
Des pipelines faciles à réutiliser pour comparer les performances d'outils de reconnaissance d'entités nommées sur les textes cliniques en français Thibault Hubert,Ghislain Vaillant,Olivier Birot,Camila Arias,Antoine Neurazet al. PFIA 2024 - Journée Santé et IA de la Plate-Forme Intelligence Artificielle, Jul 2024, La Rochelle, France Communication dans un congrès hal-04889682v1
Representation and comparison of chemotherapy protocols with ChemoKG and graph embeddings Jong Ho Jhee,Alice Rogier,Dune Giraud,Emma Pinet,Brigitte Sabatieret al. SWAT4HCLS 2024 - 15th International Semantic Web Applications and Tools for Health Care and Life Sciences Conference, Feb 2024, Leiden, Netherlands Communication dans un congrès hal-04455155v1
Prompting Large Language Models for Supporting the Differential Diagnosis of Anemia Elisa Castagnari,Lillian Muyama,Adrien Coulet LLMs4MI 2024 @FLLM 2024 - First International Workshop on Large Language Models Applications in Medical Informatics In conjunction with the The Second International Conference on Foundation and Large Language Models, IEEE, Nov 2024, Dubai, United Arab Emirates Communication dans un congrès hal-04695193v1
Results of the Ontology Alignment Evaluation Initiative 2024 Mina Abd Nikooie Pour,Alsayed Algergawy,Eva Blomqvist,Patrice Buche,Jiaoyan Chenet al. 19. International Workshop on Ontology Matching (OM 2024 collocated with ISWC-2024), Nov 2024, Baltimore, United States. pp.1-34 Communication dans un congrès hal-04892635v1
Comparing NER approaches on French clinical text, with easy-to-reuse pipelines Thibault Hubert,Ghislain Vaillant,Olivier Birot,Camila Arias,Antoine Neurazet al. MIE 2024 - 34th Medical Informatics Europe Conference, Aug 2024, Athens, Greece Communication dans un congrès hal-04584688v1
TAXN: Translate Align Extract Normalize, a multilingual extraction tool for clinical texts Antoine Neuraz,Ivan Lerner,Olivier Birot,Camila Arias,Larry Hanet al. MedInfo 2023 – the 19th world congress on Medical and Health Informatics, International Medical Informatics Association (IMIA), Jul 2023, Syndney, Australia Communication dans un congrès hal-04069590v1
Evaluating the Portability of Rheumatoid Arthritis Phenotyping Algorithms: case study on French EHRs Thibaut Fabacher,Erik-André Sauleau,Noémie Leclerc,Hugo Bergier,Jacques-Eric Gottenberget al. 33rd Medical Informatics Europe Conference, MIE2023, May 2023, Gothenburg, Sweden. pp.768-772, ⟨10.3233/SHTI230263⟩ Communication dans un congrès hal-04069779v1
Results of the Ontology Alignment Evaluation Initiative 2023 Mina Abd Nikooie Pour,Alsayed Algergawy,Patrice Buche,Leyla Jael Castro,Jiaoyan Chenet al. 18. International Workshop on Ontology Matching (OM 2023), Nov 2023, Athènes, Greece. pp.97--139 Communication dans un congrès hal-04366893v1
An analogy based framework for patient-stay identification in healthcare Safa Alsaidi,Miguel Couceiro,Esteban Marquer,Sophie Quennelle,Anita Burgunet al. ATA@ICCBR 2022 - Workshop Analogies: from Theory to Applications, Sep 2022, Nancy, France Communication dans un congrès hal-03763772v1
Matching Pharmacogenomic Knowledge: Particularities, Results, and Perspectives Pierre Monnin,Adrien Coulet 17th International Workshop on Ontology Matching : OM-2022, Oct 2022, Virtual, China Communication dans un congrès hal-03835712v1
Combiner plongements de graphes et clustering pour l'alignement de connaissances pharmacogénomiques Pierre Monnin,Chedy Raïssi,Amedeo Napoli,Adrien Coulet Santé & IA 2022 - Journée Santé et Intelligence Artificielle (Evènement affilié à PFIA 2022), Jun 2022, Saint-Etienne, France Communication dans un congrès hal-03754776v1
Portabilité des algorithmes de phénotypage: le cas de la polyarthrite rhumatoïde dans le dossier patient informatisé en français Thibaut Fabacher,Erik André Sauleau,Noémie Leclerc Du Sablon,Hugo Bergier,Jacques‐eric Gottenberget al. TAL 2022 - Journée d’étude sur la robustesse des systemes de TAL, ATALA, Nov 2022, Paris, France Communication dans un congrès hal-04295970v1
Exploring Analogical Inference in Healthcare Safa Alsaidi,Miguel Couceiro,Sophie Quennelle,Anita Burgun,Nicolas Garcelonet al. IARML@IJCAI-ECAI’2022: Workshop on the Interactions between Analogical Reasoning and Machine Learning, at IJCAI-ECAI’2022, Jul 2022, Vienna, Austria Communication dans un congrès hal-03955354v1
Expérimentations autour des architectures d'apprentissage par transfert pour l'extraction de relations biomédicales Walid Hafiane,Joël Legrand,Yannick Toussaint,Adrien Coulet EGC 2021 - 21ème édition de la conférence "Extraction et Gestion des Connaissances", Jan 2021, Montpellier / Virtuel, France Communication dans un congrès hal-03073601v1
Using an ontological representation of chemotherapy toxicities for guiding information extraction and integration from EHRs Alice Rogier,Adrien Coulet,Bastien Rance Medinfo 2021 - 18th World Congress on Medical and Health Informatics, Oct 2021, Virtual conference, Australia Communication dans un congrès hal-03364585v1
Tackling scalability issues in mining path patterns from knowledge graphs: a preliminary study Pierre Monnin,Emmanuel Bresso,Miguel Couceiro,Malika Smaïl-Tabbone,Amedeo Napoliet al. ALGOS 2020 - 1st International Conference on Algebras, Graphs and Ordered Sets, Aug 2020, Nancy, France Communication dans un congrès hal-02913224v1
Knowledge-Based Matching of $n$-ary Tuples Pierre Monnin,Miguel Couceiro,Amedeo Napoli,Adrien Coulet ICCS 2020 - 25th International Conference on Conceptual Structures, Sep 2020, Bolzano / Virtual, Italy. pp.48-56, ⟨10.1007/978-3-030-57855-8_4⟩ Communication dans un congrès hal-02493067v1
Knowledge Reconciliation with Graph Convolutional Networks: Preliminary Results Pierre Monnin,Chedy Raïssi,Amedeo Napoli,Adrien Coulet DL4KG2019 - Workshop on Deep Learning for Knowledge Graphs, Jun 2019, Portoroz, Slovenia Communication dans un congrès hal-02155546v1
Creating Fair Models of Atherosclerotic Cardiovascular Disease Risk Stephen Pfohl,Ben Marafino,Adrien Coulet,Fatima Rodriguez,Latha Palaniappanet al. AIES '19 - Proceedings of the 2019 AAAI/ACM Conference on AI, Ethics, and Society, Jan 2019, Honolulu, United States. pp.271-278, ⟨10.1145/3306618.3314278⟩ Communication dans un congrès hal-02388730v1
Cooperation of bio-ontologies for the classification of genetic intellectual disabilities : a diseasome approach Gabin Personeni,Marie-Dominique Devignes,Malika Smaïl-Tabbone,Philippe Jonveaux,Céline Bonnetet al. Proceedings of the 11th International Conference on Semantic Web Applications and Tools for Healthcare and Life Sciences (SWAT4HCLS 2018), Dec 2018, Antwerp, Belgium Communication dans un congrès hal-01925471v1
Syntax-based Transfer Learning for the Task of Biomedical Relation Extraction Joël Legrand,Yannick Toussaint,Chedy Raïssi,Adrien Coulet LOUHI 2018 - The Ninth International Workshop on Health Text Mining and Information Analysis, Oct 2018, Brussels, Belgium Communication dans un congrès hal-01869071v1
Combining Concept Annotation and Pattern Structures for Guiding Ontology Mapping Pierre Monnin,Amedeo Napoli,Adrien Coulet FCA4AI@IJCAI2018 - 6th International Workshop "What can FCA do for Artificial Intelligence?", Jul 2018, Stockholm, Sweden Communication dans un congrès hal-01858391v1
Découverte d'associations entre Evénements Indésirables Médicamenteux par les structures de patrons et les ontologies Gabin Personeni,Emmanuel Bresso,Marie-Dominique Devignes,Michel Dumontier,Malika Smaïl-Tabboneet al. Journée I.A. et Santé, Jul 2018, Nancy, France Communication dans un congrès hal-01872312v1
Using formal concept analysis for checking the structure of an ontology in LOD: the example of DBpedia Pierre Monnin,Mario Lezoche,Amedeo Napoli,Adrien Coulet 23rd International Symposium on Methodologies for Intelligent Systems, ISMIS 2017, Warsaw university of technology, Jun 2017, Warsaw, Poland. pp.674-683, ⟨10.1007/978-3-319-60438-1_66⟩ Communication dans un congrès hal-01511909v1
PGxO: A very lite ontology to reconcile pharmacogenomic knowledge units Pierre Monnin,Clement Jonquet,Joël Legrand,Amedeo Napoli,Adrien Coulet Methods, tools & platforms for Personalized Medicine in the Big Data Era, Oct 2017, Palermo, Italy. ⟨10.7287/peerj.preprints.3140v1⟩ Communication dans un congrès hal-01593184v2
Tree-LSTM and Cross-Corpus Training for Extracting Biomedical Relationships from Text Joël Legrand,Yannick Toussaint,Chedy Raïssi,Adrien Coulet DLPM2017 Workshop - 2nd International Workshop on Deep Learning for Precision Medicine, Sep 2017, Skopje, Macedonia Communication dans un congrès hal-01592802v1
Extraction d'association d'EIM à partir de dossiers patients : expérimentation avec les structures de patrons et les ontologies Gabin Personeni,Marie-Dominique Devignes,Michel Dumontier,Malika Smaïl-Tabbone,Adrien Coulet Deuxième Atelier sur l'Intelligence Artificielle et la Santé, Jun 2016, Montpellier, France Communication dans un congrès hal-01391172v1
Discovering ADE associations from EHRs using pattern structures and ontologies Gabin Personeni,Marie-Dominique Devignes,Michel Dumontier,Malika Smaïl-Tabbone,Adrien Coulet Phenotype Day, Bio-Ontologies SIG, ISMB, Jul 2016, Orlando, United States Communication dans un congrès hal-01369448v1
Suggesting valid pharmacogenes by mining linked data Kevin Dalleau,Ndeye Coumba Ndiaye,Adrien Coulet Semantic Web Applications and Tools for Life Sciences (SWAT4LS) 2015, Dec 2015, Cambridge, United Kingdom Communication dans un congrès hal-01239568v1
Extracting Disease-Symptom Relationships by Learning Syntactic Patterns from Dependency Graphs Mohsen Hassan,Olfa Makkaoui,Adrien Coulet,Yannick Toussaint BioNLP 15, Association for Computational Linguistics, Jul 2015, Beijing, China. pp.184 Communication dans un congrès hal-01184655v1
Learning Subgraph Patterns from text for Extracting Disease–Symptom Relationships Mohsen Hassan,Adrien Coulet,Yannick Toussaint 1st International Workshop on Interactions between Data Mining and Natural Language Processing, Sep 2014, Nancy, France Communication dans un congrès hal-01095595v1
Mining Linked Open Data: A Case Study with Genes Responsible for Intellectual Disability Gabin Personeni,Simon Daget,Céline Bonnet,Philippe Jonveaux,Marie-Dominique Devigneset al. Data Integration in the Life Sciences - 10th International Conference, DILS 2014, Jul 2014, Lisbon, Portugal. pp.16 - 31, ⟨10.1007/978-3-319-08590-6_2⟩ Communication dans un congrès hal-01095591v1
ILP for Mining Linked Open Data: a biomedical Case Study Gabin Personeni,Simon Daget,Céline Bonnet,Philippe Jonveaux,Marie-Dominique Devigneset al. The 24th International Conference on Inductive Logic Programming (ILP 2014), Sep 2014, Nancy, France Communication dans un congrès hal-01095597v1
Lattice Based Data Access (LBDA): An Approach for Organizing and Accessing Linked Open Data in Biology Mehwish Alam,Melisachew Wudage Chekol,Adrien Coulet,Amedeo Napoli,Malika Smaïl-Tabbone DMoLD'13 - Data Mining on Linked Data Workshop (ECML/PKDD, 2013), Sep 2013, Prague, Czech Republic Communication dans un congrès hal-00903450v1
Using pattern structures for analyzing ontology-based annotations of biomedical data Adrien Coulet,Florent Domenach,Mehdi Kaytoue,Amedeo Napoli Septièmes Journées d'Intelligence Artificielle Fondamentale, Jun 2013, Aix-en-Provence, France. pp.97--106 Communication dans un congrès hal-00922392v1
Using Pattern Structures for Analyzing Ontology-Based Annotations of Biomedical Data Adrien Coulet,Florent Domenach,Mehdi Kaytoue,Amedeo Napoli International Conference on Formal Concept Analysis, May 2013, Dresden, Germany Communication dans un congrès hal-00880643v1
Formal Concept Analysis Applied to Transcriptomic Data Mehwish Alam,Adrien Coulet,Amedeo Napoli,Malika Smaïl-Tabbone The Ninth International Conference on Concept Lattices and Their Applications - CLA 2012, Oct 2012, Fuengirola (Málaga), Spain Communication dans un congrès hal-00761003v1
Formal Concept Analysis Applied to Transcriptomic Data Mehwish Alam,Adrien Coulet,Amedeo Napoli,Malika Smaïl-Tabbone What can FCA do for Artificial Intelligence (FCA4AI) (ECAI 2012), Aug 2012, Montpellier, France Communication dans un congrès hal-00760993v1
Integrating heterogeneous relationships extracted from natural language sentences Adrien Coulet,Russ B Altman,Mark A. Musen,Nigam H. Shah Bio-ontologies SIG, Co-located with ISMB 2010, Jul 2010, Boston (MA), United States Communication dans un congrès hal-04892764v1
NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources Clement Jonquet,Paea Lependu,Sean M. Falconer,Adrien Coulet,Natalya F. Noyet al. 9th International Semantic Web Conference (ISWC 2010), Semantic Web Challenge winner award, Nov 2010, Shangai, China. pp.8 Communication dans un congrès hal-00557982v1
Indexation et intégration de ressources textuelles à l'aide d'ontologies : application au domaine biomédical Clement Jonquet,Adrien Coulet,Nigam Shah,Mark A. Musen 21èmes Journées Francophones d'Ingénierie des Connaissances (IC 2010), Jun 2010, Nimes, France. pp.271-282 Communication dans un congrès hal-00488419v1
Ontology Services for Semantic Applications in Healthcare and Life Sciences Nigam H. Shah,Natasha F. Noy,Clement Jonquet,Adrien Coulet,Patricia L. Whetzelet al. AMIA 2009 - American Medical Informatics Association Annual Symposium, Nov 2009, San Francisco, United States. pp.515 Communication dans un congrès hal-04276271v1
BioPortal: Ontologies and Integrated Data Resources at the Click of the Mouse Patricia L. Whetzel,Nigam H. Shah,Natalya F. Noy,Benjamin Dai,Michael Dorfet al. 1st International Conference on Biomedical Ontology (ICBO 2009), Poster session, B. Smith, Jul 2009, Buffalo, United States. pp.197 Communication dans un congrès hal-04276312v1
Ontology Refinement through Role Assertion Analysis: Example in Pharmacogenomics Adrien Coulet,Malika Smail-Tabbone,Amedeo Napoli,Marie-Dominique Devignes 21st International Workshop on Description Logics - DL2008, May 2008, Dresden, Germany Communication dans un congrès inria-00338677v1
Ontology-guided Data Preparation for Discovering Genotype-Phenotype Relationships Adrien Coulet,Malika Smaïl-Tabbone,Pascale Benlian,Amedeo Napoli,Marie-Dominique Devignes Network Tools and Applications in Biology: A Semantic Web for Bioinformatics - NETTAB 2007, Jun 2007, Pisa, Italy Communication dans un congrès inria-00186988v1
Ontology-driven Data Integration for Pharmacogenomics: Application to Genome Variations Adrien Coulet,Malika Smaïl-Tabbone,Pascale Benlian,Amedeo Napoli,Marie-Dominique Devignes Journées Ouvertes : Biologie, Informatique et Mathématiques - JOBIM'06, Centre de Bioinformatique de Bordeaux (CBiB), Jul 2006, Bordeaux/France Communication dans un congrès inria-00080064v1
SNP-Converter: an Ontology-Based solution to Reconcile Heterogeneous SNP Descriptions for Pharmacogenomic Studies Adrien Coulet,Malika Smaïl-Tabbone,Pascale Benlian,Amedeo Napoli,Marie-Dominique Devignes 3rd International Workshop on Data Integration in the Life Sciences 2006 - DILS'06, Jul 2006, European Bioinformatics Institute (EBI), Hinxton/UK Communication dans un congrès inria-00080050v1
Suggested Ontology for Pharmacogenomics (SO-Pharm): Modular Construction and Preliminary Testing Adrien Coulet,Malika Smaïl-Tabbone,Amedeo Napoli,Marie-Dominique Devignes Proceedings of International Workshop on Knowledge Systems in Bioinformatics - KSinBIT'06, Oct 2006, Montpellier, France Communication dans un congrès inria-00089824v1
SNP-Ontology for semantic integration of genomic variation data Adrien Coulet,Malika Smaïl-Tabbone,Pascale Benlian,Amedeo Napoli,Marie-Dominique Devignes 14th Annual International Conference on Intelligent Systems for Molecular Biology - ISMB'06, Aug 2006, Fortaleza/Brésil Communication dans un congrès inria-00067863v2
Extraction de données pharmacogénomiques à partir d'études cliniques : problématique Adrien Coulet,Marie-Dominique Devignes,Malika Smaïl-Tabbone Deuxième atelier sur la "Fouille de données complexes dans un processus d'extraction des connaissances", Jan 2005, Paris/France Communication dans un congrès inria-00080156v1

Poster de conférence (6)

PGxCorpus and PGxLOD: two shared resources for knowledge management in pharmacogenomics Pierre Monnin,Joël Legrand,Adrien Coulet JOBIM 2022 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2022, Rennes, France. , JOBIM 2022 Proceedings - Posters, Démos Poster de conférence hal-03754888v1
Discovering Subsumption Axioms with Concept Annotation Pierre Monnin,Amedeo Napoli,Adrien Coulet BDA 2017 - 33ème Conférence sur la Gestion de Données — Principes, Technologies et Applications, Nov 2017, Nancy, France. Gestion de Données — Principes, Technologies et Applications (BDA 2017) Poster de conférence hal-01671454v2
Mining Linked Open Data: a Case Study with Genes Responsible for Intellectual Disability Gabin Personeni,Simon Daget,Céline Bonnet,Philippe Jonveaux,Marie-Dominique Devigneset al. ECCB'14 (European Conference on Computational Biology 2014), Sep 2014, Strasbourg, France. , 2014 Poster de conférence hal-01092800v1
Ontology Web Services for Semantic Applications Patricia L. Whetzel,Nigam H. Shah,Natalya F. Noy,Clement Jonquet,Adrien Couletet al. Pacific Symposium on Biocomputing (PSB 2010), Poster session, Jan 2010, Waimea, United States. Poster de conférence hal-04297858v1
Ontology-based Web Services for Data Annotation and Integration Patricia L. Whetzel,Nigam H. Shah,Natalya Noy,Clement Jonquet,Adrien Couletet al. 18th International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Technology track, Jul 2010, Boston, United States. , TT33, 2010 Poster de conférence lirmm-01605892v1
Ontology-based Web Services for Semantic Applications Patricia L. Whetzel,Nigam H. Shah,Natalya F. Noy,Clement Jonquet,Adrien Couletet al. 13th Annual Bio-Ontologies SIG Meeting, Poster session, Jul 2010, Boston, United States. Poster de conférence hal-04271647v1

Chapitre d'ouvrage (1)

Ontology-based knowledge discovery in pharmacogenomics. Adrien Coulet,Malika Smaïl-Tabbone,Amedeo Napoli,Marie-Dominique Devignes Hamid R. Arabnia and Quoc-Nam Tran. Software Tools and Algorithms for Biological Systems, 696, Springer, pp.357-66, 2011, Software Tools and Algorithms for Biological Systems, 978-1-4419-7046-6. ⟨10.1007/978-1-4419-7046-6_36⟩ Chapitre d'ouvrage inria-00585072v1

Autre publication scientifique (1)

Supporting Diagnosis With Next-Generation Artificial Intelligence Cedric Bousquet,Adrien Coulet 2022, ⟨10.1001/jama.2022.2303⟩ Autre publication scientifique hal-03700431v1

Pré-publication, Document de travail (3)

Enhancing Clinical Data Warehouses with Provenance and Large File Management: The gitOmmix Approach for Clinical Omics Data Maxime Wack,Adrien Coulet,Anita Burgun,Bastien Rance 2024 Pré-publication, Document de travail hal-04687350v1
Providing Molecular Characterization for Unexplained Adverse Drug Reactions François-Élie Calvier,Pierre Monnin,Miguel Boland,Patryk Jarnot,Emmanuel Bressoet al. 2019 Pré-publication, Document de travail hal-02196134v1
Data-Interlinking: the Seed of Knowledge Reconciliation in Pharmacogenomics Pierre Monnin,Amedeo Napoli,Adrien Coulet 2018 Pré-publication, Document de travail hal-01955262v1

Thèse (1)

Construction et utilisation d'une base de connaissances pharmacogénomique pour l'intégration de données et la découverte de connaissances Adrien Coulet Interface homme-machine [cs.HC]. Université Henri Poincaré - Nancy 1, 2008. Français. ⟨NNT : 2008NAN10047⟩ Thèse tel-01748450v2

HDR (1)

Mises en correspondances de données, textes et connaissances pour la découverte de connaissances biomédicales Adrien Coulet Base de données [cs.DB]. Université de Lorraine, 2019 HDR tel-02429926v2

Proceedings/Recueil des communications (2)

Actes de la journée d’étude sur l’utilisation des LLM à l’hôpital Romain Michelucci,Bastien Rance,Adrien Coulet Journée llm@hopital.fr, Mar 2026, Paris, France. 2026, Journée d'étude ATALA Proceedings/Recueil des communications hal-05556971v1
Actes de la journée d'étude sur la Similarité entre Patients, SimPa 2023 Adrien Coulet,Christel Gérardin,Aurélie Névéol,Xavier Tannier 2023 Proceedings/Recueil des communications hal-04080808v1