Cristina Vieira

130
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Publications

Publications

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Identification and quantification of transposable element transcripts using Long-Read RNA-seq in Drosophila germline tissues

Rita Rebollo , Pierre Gerenton , Eric Cumunel , Arnaud Mary , François Sabot et al.
Peer Community Journal, 2024, 4 (e89), ⟨10.24072/pcjournal.457⟩
Article dans une revue hal-04285238 v1
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ChimeraTE: a pipeline to detect chimeric transcripts derived from genes and transposable elements

Daniel Oliveira , Marie Fablet , Anaïs Larue , Agnès Vallier , Claudia Carareto et al.
Nucleic Acids Research, In press, 51 (18), pp.9764-9784. ⟨10.1093/nar/gkad671⟩
Article dans une revue hal-04195961 v1

Sex differences in adult lifespan and aging rate across mammals: A test of the ‘Mother Curse hypothesis’

Hugo Cayuela , Jean-Michel Gaillard , Cristina Vieira , Victor Ronget , Jérôme M.W. Gippet et al.
Mechanisms of Ageing and Development, 2023, 212, pp.111799. ⟨10.1016/j.mad.2023.111799⟩
Article dans une revue hal-04077310 v1

The for gene as one of the drivers of foraging variations in a parasitic wasp

Aurore Gallot , Emmanuel Desouhant , Vincent Lhuillier , David Lepetit , Adil El Filali et al.
Molecular Ecology, 2023, 32 (7), pp.1760-1776. ⟨10.1111/mec.16834⟩
Article dans une revue hal-04607836 v1
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A quantitative, genome-wide analysis in Drosophila reveals transposable elements’ influence on gene expression is species-specific

Marie Fablet , Judit Salces-Ortiz , Angelo Jacquet , Bianca Menezes , Corentin Dechaud et al.
Genome Biology and Evolution, 2023, 15 (9), pp.evad160. ⟨10.1093/gbe/evad160⟩
Article dans une revue hal-04195964 v1

The for gene as one of the drivers of foraging variations in a parasitic wasp

Aurore Gallot , Emmanuel Desouhant , Vincent Lhuillier , David Lepetit , Adil El Filali et al.
Molecular Ecology, 2023, 32 (7), pp.1760-1776. ⟨10.1111/mec.16834⟩
Article dans une revue hal-04515212 v1
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A comprehensive evolutionary scenario for the origin and neofunctionalization of the Drosophila speciation gene Odysseus (OdsH)

William Vilas Boas Nunes , Daniel Siqueira de Oliveira , Guilherme de Rezende Dias , Antonio Bernardo Carvalho , Ícaro Putinhon Caruso et al.
G3, 2023, 14 (3), pp.jkad299. ⟨10.1093/g3journal/jkad299⟩
Article dans une revue hal-04400854 v1

The for gene as one of the drivers of foraging variations in a parasitic wasp

Aurore Gallot , Emmanuel Desouhant , Vincent Lhuillier , David Lepetit , Adil El Filali et al.
Molecular Ecology, 2023, 32 (7), pp.1760-1776. ⟨10.1111/mec.16834⟩
Article dans une revue hal-04107991 v1
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Transposable element expression with variation in sex chromosome number: insights into a toxic Y effect on human longevity

Jordan Teoli , Miriam Merenciano , Marie Fablet , Anamaria Necsulea , Daniel Siqueira-De-Oliveira et al.
Peer Community In Genomics, 2023, ⟨10.1101/2023.08.03.550779⟩
Article dans une revue hal-04923419 v1
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Impact of Heat Stress on Transposable Element Expression and Derived Small RNAs in Drosophila subobscura

Alejandra Bodelón , Marie Fablet , Daniel Siqueira de Oliveira , Cristina Vieira , Maria Pilar García Guerreiro
Genome Biology and Evolution, 2023, 15 (11), pp.evad189. ⟨10.1093/gbe/evad189⟩
Article dans une revue hal-04276658 v1

The for gene as one of the drivers of foraging variations in a parasitic wasp

Aurore Gallot , Emmanuel Desouhant , Vincent Lhuillier , David Lepetit , Adil El Filali et al.
Molecular Ecology, 2023, 32 (7), pp.1760-1776. ⟨10.1111/mec.16834⟩
Article dans une revue hal-04740105 v1
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High Stability of the Epigenome in <i>Drosophila</i> Interspecific Hybrids

Alejandra Bodelón , Marie Fablet , Philippe Veber , Cristina Vieira , Maria Pilar García Guerreiro
Genome Biology and Evolution, 2022, 14 (2), ⟨10.1093/gbe/evac024⟩
Article dans une revue hal-03594035 v1
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Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system

Mariana Galvão Ferrarini , Elisa Dell’aglio , Agnès Vallier , Severine Balmand , Carole Vincent-Monégat et al.
Microbiome, 2022, 10 (1), pp.156. ⟨10.1186/s40168-022-01334-8⟩
Article dans une revue hal-03839252 v1
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Sex‐related differences in aging rate are associated with sex chromosome system in amphibians

Hugo Cayuela , Jean-François Lemaître Lemaître , Jean‐paul Léna , Victor Ronget , Iñigo Martínez‐solano et al.
Evolution - International Journal of Organic Evolution, 2022, 76 (2), pp.346-356. ⟨10.1111/evo.14410⟩
Article dans une revue hal-03644431 v1
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The transposable element-rich genome of the cereal pest Sitophilus oryzae

Nicolas Parisot , Carlos Vargas-Chávez , Clément Goubert , Patrice Baa-Puyoulet , Séverine Balmand et al.
BMC Biology, 2021, 19 (1), pp.241. ⟨10.1186/s12915-021-01158-2⟩
Article dans une revue hal-03627264 v1
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The discovery, distribution and diversity of DNA viruses associated with Drosophila melanogaster in Europe

Megan Wallace , Kelsey Coffman , Clément Gilbert , Sanjana Ravindran , Gregory Albery et al.
Virus Evolution, 2021, 7 (1), pp.veab031. ⟨10.1093/ve/veab031⟩
Article dans une revue hal-03229780 v1

Comparative transcriptomics between Drosophila mojavensis and D. arizonae reveals transgressive gene expression and underexpression of spermatogenesis-related genes in hybrid testes

Cecilia Banho , Vincent Mérel , Thiago Oliveira , Claudia Carareto , Cristina Vieira
Scientific Reports, 2021, 11 (1), pp.9844. ⟨10.1038/s41598-021-89366-2⟩
Article dans une revue hal-04809001 v1

Transposable Element Expression and Regulation Profile in Gonads of Interspecific Hybrids of Drosophila arizonae and Drosophila mojavensis wrigleyi

Cecília Artico Banho , Daniel Siqueira Oliveira , Annabelle Haudry , Marie Fablet , Cristina Vieira et al.
Cells, 2021, 10 (12), pp.3574. ⟨10.3390/cells10123574⟩
Article dans une revue hal-03628009 v1
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The Worldwide Invasion of Drosophila suzukii Is Accompanied by a Large Increase of Transposable Element Load and a Small Number of Putatively Adaptive Insertions

Vincent Mérel , Patricia Gibert , Inessa Buch , Valentina Rodriguez Rada , Arnaud Estoup et al.
Molecular Biology and Evolution, 2021, 38 (10), pp.4252-4267. ⟨10.1093/molbev/msab155⟩
Article dans une revue hal-03417234 v1
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Phenotypic and Transcriptomic Responses to Stress Differ According to Population Geography in an Invasive Species

Pierre Marin , Angelo Jaquet , Justine Picarle , Marie Fablet , Vincent Merel et al.
Genome Biology and Evolution, 2021, 13 (9), pp.evab208. ⟨10.1093/gbe/evab208⟩
Article dans une revue hal-03417240 v1

Oxidative and radiation stress induces transposable element transcription in Drosophila melanogaster

Daniel Siqueira de Oliveira , Marcos Trindade Rosa , Cristina Vieira , Elgion Loreto
Journal of Evolutionary Biology, 2021, 34 (4), pp.628-638. ⟨10.1111/jeb.13762⟩
Article dans une revue hal-04809005 v1
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Biological Invasion: The Influence of the Hidden Side of the (Epi)Genome

Pierre Marin , Julien Genitoni , Dominique D. Barloy , Stéphane Maury , Patricia Gibert et al.
Functional Ecology, 2020, 34 (2), pp.385-400. ⟨10.1111/1365-2435.13317⟩
Article dans une revue (article de synthèse) hal-02063295 v1
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Homology-Free Detection of Transposable Elements Unveils Their Dynamics in Three Ecologically Distinct Rhodnius Species

Marcelo Castro , Clément Goubert , Fernando Monteiro , Cristina Vieira , Claudia Carareto
Genes, 2020, Population and Evolutionary Genetics and Genomics, 11 (2), pp.170. ⟨10.3390/genes11020170⟩
Article dans une revue hal-02487180 v1
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Transposable elements in Drosophila

Vincent Mérel , Matthieu Boulesteix , Marie Fablet , Cristina Vieira
Mobile DNA, 2020, 11 (1), ⟨10.1186/s13100-020-00213-z⟩
Article dans une revue hal-02957906 v1
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A transposon story : from TE content to TE dynamic invasion of Drosophila genomes using the single-molecule sequencing technology from Oxford Nanopore

Mohamed Mourdas , Nguyet Thi-Minh Dang , Yuki Ogyama , Nelly Burlet , Bruno Mugat et al.
Cells, 2020, 9 (8), pp.1776. ⟨10.3390/cells9081776⟩
Article dans une revue hal-02905128 v1
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Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses

Martin Kapun , Maite G Barrón , Fabian Staubach , Darren J Obbard , R Axel W Wiberg et al.
Molecular Biology and Evolution, 2020, 37 (9), pp.2661-2678. ⟨10.1093/molbev/msaa120⟩
Article dans une revue hal-04615912 v2
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On the Importance to Acknowledge Transposable Elements in Epigenomic Analyses

Emmanuelle Lerat , Josep Casacuberta , Cristian Chaparro , Cristina Vieira
Genes, 2019, 10 (4), pp.258. ⟨10.3390/genes10040258⟩
Article dans une revue hal-02093613 v1
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Dynamic Interactions Between the Genome and an Endogenous Retrovirus: Tirant in Drosophila simulans Wild-Type Strains

Marie Fablet , Angelo Jacquet , Rita Rebollo , Annabelle A. Haudry , Carine Rey et al.
G3, 2019, 9 (3), pp.855-865. ⟨10.1534/g3.118.200789⟩
Article dans une revue hal-02004384 v1

Stress affects the epigenetic marks added by natural transposable element insertions in Drosophila melanogaster

Lain Guio , Cristina Vieira , Josefa González
Scientific Reports, 2018, 8 (1), pp.1-10. ⟨10.1038/s41598-018-30491-w⟩
Article dans une revue hal-01965035 v1

Genetic exchange in eukaryotes through horizontal transfer: connected by the mobilome

Gabriel Luz Wallau , Cristina Vieira , Élgion Lúcio Silva Loreto
Mobile DNA, 2018, 9 (1), pp.1-16. ⟨10.1186/s13100-018-0112-9⟩
Article dans une revue hal-01965038 v1
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Population specific dynamics and selection patterns of transposable element insertions in European natural populations

Emmanuelle Lerat , Clément Goubert , Sara Guirao-Rico , Miriam Merenciano , Anne-Béatrice Dufour et al.
Molecular Ecology, 2018, pp.1-17. ⟨10.1111/mec.14963⟩
Article dans une revue hal-01965027 v1

Sex gap in aging and longevity: can sex chromosomes play a role?

Gabriel A.B. Marais , Jean-Michel Gaillard , Cristina Vieira , Ingrid Plotton , Damien Sanlaville et al.
Biology of Sex Differences, 2018, 9 (1), pp.1-14. ⟨10.1186/s13293-018-0181-y⟩
Article dans une revue hal-01965036 v1

An attempt to select non-genetic variation in resistance to starvation and reduced chill coma recovery time in Drosophila melanogaster

Bianca Menezes , Judit Salces-Ortiz , Héloise Muller , Nelly Burlet , Sonia Martinez et al.
Journal of Experimental Biology, 2018, 221 (23), pp.jeb186254. ⟨10.1242/jeb.186254⟩
Article dans une revue hal-01965032 v1
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TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes

Emmanuelle Lerat , Marie Fablet , Laurent Modolo , Hélène Lopez-Maestre , Cristina Vieira
Nucleic Acids Research, 2017, 45, pp.13. ⟨10.1093/nar/gkw953⟩
Article dans une revue hal-01524877 v1
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Identification of misexpressed genetic elements in hybrids between Drosophila-related species

Hélène Lopez-Maestre , Elias Alberto Gutierrez Carnelossi , Vincent Lacroix , Nelly Burlet , Bruno Mugat et al.
Scientific Reports, 2017, 7, pp.40618. ⟨10.1038/srep40618⟩
Article dans une revue hal-01524879 v2
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Less effective selection leads to larger genomes

Tristan Lefébure , Claire Morvan , Florian Malard , Clémentine François , Lara Konecny-Dupré et al.
Genome Research, 2017, 27, pp.1016-1028. ⟨10.1101/gr.212589.116⟩
Article dans une revue hal-01544879 v2
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Transposable Element Misregulation Is Linked to the Divergence between Parental piRNA Pathways in Drosophila Hybrids

Valèria Romero-Soriano , Laurent Modolo , Hélène Lopez-Maestre , Bruno Mugat , Eugénie Pessia et al.
Genome Biology and Evolution, 2017, 9 (6), pp.1450 - 1470. ⟨10.1093/gbe/evx091⟩
Article dans une revue hal-01596041 v1
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High-Throughput Sequencing of Transposable Element Insertions Suggests Adaptive Evolution of the Invasive Asian Tiger Mosquito Towards Temperate Environments

Clément Goubert , Hélène Henri , Guillaume Minard , Claire Valiente Moro , Patrick Mavingui et al.
Molecular Ecology, 2017, 26 (15), pp.1-14. ⟨10.1111/mec.14184⟩
Article dans une revue hal-01546749 v1

Population genetics of the Asian tiger mosquito Aedes albopictus, an invasive vector of human diseases

C. Goubert , G. Minard , Cristina Vieira , Matthieu Boulesteix
Heredity, 2016, 117 (3), pp.125-34. ⟨10.1038/hdy.2016.35⟩
Article dans une revue (article de synthèse) hal-02012374 v1

Is genome size of Lepidoptera linked to host plant range?

P. A. Calatayud , C. Petit , N. Burlet , S. Dupas , N. Glaser et al.
Entomologia Experimentalis et Applicata, 2016, 159 (3), pp.354-361. ⟨10.1111/eea.12446⟩
Article dans une revue istex hal-02016410 v1
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Drosophila Females Undergo Genome Expansion after Interspecific Hybridization

Valèria Romero-Soriano , Nelly Burlet , Doris Vela , Antonio Fontdevila , Cristina Vieira et al.
Genome Biology and Evolution, 2016, 8 (3), pp.556-561. ⟨10.1093/gbe/evw024⟩
Article dans une revue hal-01352572 v1
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SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence

Hélène Lopez-Maestre , Lilia Brinza , Camille Marchet , Janice Kielbassa , Sylvère Bastien et al.
Nucleic Acids Research, 2016, ⟨10.1093/nar/gkw655⟩
Article dans une revue hal-01352586 v1
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De novo assembly and annotation of the Asian tiger mosquito (Aedes albopictus) repeatome with dnaPipeTE from raw genomic reads and comparative analysis with the yellow fever mosquito (Aedes aegypti).

Clément Goubert , Laurent Modolo , Cristina Vieira , Claire Valientemoro , Patrick Mavingui et al.
Genome Biology and Evolution, 2015, 7 (4), pp.1192-205
Article dans une revue hal-01227710 v1
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De novo assembly and annotation of the Asian tiger mosquito (<em>Aedes albopictus</em>) repeatome with dnaPipeTE from raw genomic reads and comparative analysis with the yellow fever mosquito (<em>Aedes aegypti</em>)

Clément Goubert , Laurent Modolo , Cristina Vieira , Claire Valiente Moro , Patrick Mavingui et al.
Genome Biology and Evolution, 2015, 7 (4), pp.1192-1205. ⟨10.1093/gbe/evv050⟩
Article dans une revue hal-02637041 v1
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Exposure to hycanthone alters chromatin structure around specific gene functions and specific repeats in Schistosoma mansoni.

David Roquis , Julie M. J. Lepesant , Emanuel Villafan , Jérôme Boissier , Cristina Vieira et al.
Frontiers in Genetics, 2014, 5, pp.207. ⟨10.3389/fgene.2014.00207⟩
Article dans une revue hal-01112701 v1
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Specific Activation of an I-Like Element in Drosophila Interspecific Hybrids

Elias a G Carnelossi , Emmanuelle Lerat , Hélène Henri , Sonia Martinez , Claudia M A Carareto et al.
Genome Biology and Evolution, 2014, 6, pp.1806 - 1817. ⟨10.1093/gbe/evu141⟩
Article dans une revue hal-01526700 v1
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A Genome-Wide Survey of Genetic Instability by Transposition in Drosophila Hybrids

Doris Vela , Antonio Fontdevila , Cristina Vieira , García Guerreiro María Pilar
PLoS ONE, 2014, 9, pp.87 - 87. ⟨10.1371/journal.pone.0088992.s005⟩
Article dans une revue hal-01526703 v1
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Genomic regions harboring insecticide resistance-associated Cyp genes are enriched by transposable element fragments carrying putative transcription factor binding sites in two sibling Drosophila species

Claudia M A Carareto , Eric H Hernandez , Cristina Vieira
Gene, 2014, 537 (1), pp.93-99. ⟨10.1016/j.gene.2013.11.080⟩
Article dans une revue hal-00922703 v1
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The Drosophila Su(var)3–7 Gene Is Required for Oogenesis and Female Fertility, Genetically Interacts with piwi and aubergine, but Impacts Only Weakly Transposon Silencing

Denis Basquin , Anne Spierer , Flora Begeot , Dmitry E Koryakov , Anne-Laure Todeschini et al.
PLoS ONE, 2014, 9 (5), pp.e96802. ⟨10.1371/journal.pone.0096802⟩
Article dans une revue hal-01092623 v2

Could interallelic interactions be a key to the epigenetic aspects of fitness-trait inbreeding depression?

C. Biemont , Cristina Vieira
Heredity, 2014, 112, pp.219-20. ⟨10.1038/hdy.2013.80⟩
Article dans une revue hal-02072957 v1
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Variable expression levels detected in the Drosophila effectors of piRNA biogenesis

Marie Fablet , Abdou Akkouche , Virginie Braman , Cristina Vieira
Gene, 2014, 537 (1), pp.149-153. ⟨10.1016/j.gene.2013.11.095⟩
Article dans une revue hal-00922704 v1

Maternally deposited germline piRNAs silence the tirant retrotransposon in somatic cells

Abdou Akkouche , Thomas Grentzinger , Marie Fablet , Claudia Armenise , Nelly Burlet et al.
EMBO Reports, 2013, 14 (5), pp.458-64. ⟨10.1038/embor.2013.38⟩
Article dans une revue hal-00850319 v1

Transposon proliferation in an asexual parasitoid.

Ken Kraaijeveld , Brechtje Zwanenburg , Benjamin Hubert , Cristina Vieira , Sylvia de Pater et al.
Molecular Ecology, 2012, 21 (16), pp.3898-3906. ⟨10.1111/j.1365-294X.2012.5582.x⟩
Article dans une revue hal-00850325 v1

tirant, a newly discovered active endogenous retrovirus in Drosophila simulans.

Abdou Akkouche , Rita Rebollo , Nelly Burlet , Caroline Esnault , Sonia Martinez et al.
Journal of Virology, 2012, 86 (7), pp.3675-3681. ⟨10.1128/JVI.07146-11⟩
Article dans une revue hal-00763499 v1
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A snapshot of histone modifications within transposable elements in Drosophila wild type strains.

Rita Rebollo , Béatrice Horard , Flora Begeot , Marion Delattre , Eric Gilson et al.
PLoS ONE, 2012, 7 (9), pp.1-7. ⟨10.1371/journal.pone.0044253⟩
Article dans une revue hal-00850321 v1
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International Congress on Transposable Elements (ICTE) 2012 in Saint Malo and the sea of TE stories.

Abdelkader Aïnouche , Mireille Bétermier , Mick Chandler , Richard Cordaux , Gaël Cristofari et al.
Mobile DNA, 2012, 3 (1), pp.17. ⟨10.1186/1759-8753-3-17⟩
Article dans une revue inserm-00764323 v1

A comparative analysis of the amounts and dynamics of transposable elements in natural populations of Drosophila melanogaster and Drosophila simulans.

Cristina Vieira , Marie Fablet , Emmanuelle Lerat , Matthieu Boulesteix , Rita Rebollo et al.
Journal of Environmental Radioactivity, 2012, 113, pp.83-86. ⟨10.1016/j.jenvrad.2012.04.001⟩
Article dans une revue istex hal-00763500 v1

New national and regional bryophyte records, 31

L. T. Ellis , Autun L. Alegro , Halina Bednarek-Ochyra , Ryszard Ochyra , A. Bergamini et al.
Journal of Bryology, 2012, 34 (2), pp.123-134. ⟨10.1179/1743282012Y.0000000009⟩
Article dans une revue hal-00739019 v1

Vertical inheritance and bursts of transposition have shaped the evolution of the BS non-LTR retrotransposon in Drosophila.

Adriana Granzotto , Fabrício R Lopes , Cristina Vieira , Claudia M A Carareto
Molecular Genetics and Genomics, 2011, 286 (1), pp.57-66. ⟨10.1007/s00438-011-0629-9⟩
Article dans une revue istex hal-00850379 v1

Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes.

Emmanuelle Lerat , Nelly Burlet , Christian Biémont , Cristina Vieira
Gene, 2011, 473 (2), pp.100-9. ⟨10.1016/j.gene.2010.11.009⟩
Article dans une revue istex hal-00850380 v1
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Medicago truncatula contains a second gene encoding a plastid located glutamine synthetase exclusively expressed in developing seeds

Ana Seabra , Cristina Vieira , Julie Vera Cullimore , Helena Carvalho
BMC Plant Biology, 2010, 10 (183), 16 p. ⟨10.1186/1471-2229-10-183⟩
Article dans une revue hal-02659780 v1

Jumping genes and epigenetics: Towards new species.

Rita Rebollo , Béatrice Horard , Benjamin Hubert , Cristina Vieira
Gene, 2010, 454 (1-2), pp.1-7. ⟨10.1016/j.gene.2010.01.003⟩
Article dans une revue (article de synthèse) istex hal-00850384 v1

Genes devoid of full-length transposable element insertions are involved in development and in the regulation of transcription in human and closely related species.

Hussein Mortada , Cristina Vieira , Emmanuelle Lerat
Journal of Molecular Evolution, 2010, 71 (3), pp.180-91. ⟨10.1007/s00239-010-9376-5⟩
Article dans une revue istex hal-00850383 v1

Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila.

Marie Fablet , Emmanuelle Lerat , Rita Rebollo , Béatrice Horard , Nelly Burlet et al.
FASEB Journal, 2009, 23 (5), pp.1482-9. ⟨10.1096/fj.08-123513⟩
Article dans une revue hal-00850396 v1

Infra- and Transspecific Clues to Understanding the Dynamics of Transposable Elements

Cristina Vieira , M. Fablet , E. Lerat
genome dyn stab, 2009, --, pp.115-123
Article dans une revue hal-00428338 v1

Genomic environment influences the dynamics of the <i>tirant</i> LTR retrotransposon in <i>Drosophila</i>

M. Fablet , E. Lerat , R. Rebollo , B. Horard , N. Burlet et al.
FASEB Journal, 2009, 23, pp.54-62
Article dans une revue hal-00428323 v1

Identification of expressed transposable element insertions in the sequenced genome of <i>Drosophila melanogaster</i>

M. Deloger , F.M.G. Cavalli , E. Lerat , C. Biémont , M.-F. Sagot et al.
Gene, 2009, 439, pp.55-62
Article dans une revue hal-00428351 v1

The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes.

Adriana Granzotto , Fabrício R Lopes , Emmanuelle Lerat , Cristina Vieira , Claudia M A Carareto
BMC Evolutionary Biology, 2009, 9, pp.174. ⟨10.1186/1471-2148-9-174⟩
Article dans une revue hal-00850397 v1
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Losing helena: The extinction of a drosophila line-like element

Rita Rebollo , Emmanuelle Lerat , Liliana Lopez Kleine , Christian Biémont , Cristina Vieira
BMC Genomics, 2008, 9, pp.1-11. ⟨10.1186/1471-2164-9-149⟩
Article dans une revue hal-02668006 v1

[Prophylaxis of thromboembolic disease in obstetrics after the French guidelines publication]

C. Chauleur , Cristina Vieira , P. Seffert
Gynécologie Obstétrique & Fertilité, 2008, 36 (1), pp.23-34. ⟨10.1016/j.gyobfe.2007.07.043⟩
Article dans une revue istex ujm-00440346 v1

The heterochromatic copies of the LTR retrotransposons as a record of the genomic events that have shaped the <i>D</i>rosophila melanogaster genome

N. Mugnier , Laurent Guéguen , Cristina Vieira , C. Biémont
Gene, 2008, 411, pp.87-93
Article dans une revue hal-00428114 v1

Mitspieler der Evolution

C. Biémont , Cristina Vieira
Spektrum der Wissenschaft, 2007, S44, pp.44-49
Article dans une revue hal-00434754 v1

The evolution of retrotransposon regulatory regions and its consequences on the Drosophila melanogaster and Homo sapiens host genomes

Marie Fablet , Rita Rebollo , Christian Biémont , Cristina Vieira
Gene, 2007, 390 (1-2), pp.84-91. ⟨10.1016/j.gene.2006.08.005⟩
Article dans une revue istex hal-02665818 v1

Evolutionary Pathways of the tirant LTR Retrotransposon in the <i>Drosophila melanogaster</i> Subgroup of Species

M. Fablet , S. Souames , C. Biémont , Cristina Vieira
Journal of Molecular Evolution, 2007, 64, pp.438-447
Article dans une revue hal-00434598 v1

Junk DNA as an evolutionary force

C. Biémont , Cristina Vieira
Nature, 2006, 443, pp.521-524
Article dans une revue hal-00427901 v1

Ongoing loss of the tirant transposable element in natural populations of <i>Drosophila simulans</i>

M. Fablet , J.F. Donald , C. Biémont , Cristina Vieira
Gene, 2006, 375, pp.54-62
Article dans une revue hal-00427929 v1

What transposable elements tell us about genome organization and evolution: the case of <i>Drosophila</i>

C. Biémont , Cristina Vieira
Cytogenetics and Genome Researchearch, 2005, 110, pp.25-34
Article dans une revue hal-00427833 v1

Is genome size influenced by colonization of new environments in dipteran species ?

C. Nardon , G. Deceliere , C. Loevenbruck , M. Weiss , Cristina Vieira et al.
Molecular Ecology, 2005, 14, pp.869-878
Article dans une revue hal-00427794 v1

New regulatory regions of <i>Drosophila 412</i> retrotransposable element generated by recombination

N. Mugnier , C. Biémont , Cristina Vieira
Molecular Biology and Evolution, 2005, 22, pp.747-757
Article dans une revue hal-00427792 v1

Transposable element dynamics in two sibling species: <i>Drosophila melanogaster</i> and <i>Drosophila simulans</i>

Cristina Vieira , C. Biémont
Genetica, 2004, 120, pp.115-123
Article dans une revue hal-00427674 v1

L`influence des éléments transposables sur la taille des génomes

C. Biémont , Cristina Vieira
Journal de la Société de Biologie, 2004, 198, pp.413-417
Article dans une revue hal-00427507 v1

Variation of the genome size estimate with environmental conditions in Drosophila melanogaster

C. Nardon , M. Weiss , Cristina Vieira , C. Biémont
Cytometry - Part A, 2003, 55A, pp.43-49
Article dans une revue hal-00427444 v1

Variation of the genome size estimate with environmental conditions in Drosophila melanogaster.

Christiane Nardon , Michèle Weiss , Cristina Vieira , Christian Biémont
Cytometry Part A, 2003, 55 (1), pp.43-9. ⟨10.1002/cyto.a.10061⟩
Article dans une revue hal-00294849 v1

Worldwide distribution of transposable element copy number in natural populations of Drosophila simulans

C. Biémont , C. Nardon , G. Deceliere , D. Lepetit , C. Loevenbruck et al.
Evolution - International Journal of Organic Evolution, 2003, 57, pp.159-167
Article dans une revue hal-00427365 v1

WORLDWIDE DISTRIBUTION OF TRANSPOSABLE ELEMENT COPY NUMBER IN NATURAL POPULATIONS OF DROSOPHILA SIMULANS

Christian Biémont , Christiane Nardon , Grégory Deceliere , David Lepetit , Catherine Lœvenbruck et al.
Evolution - International Journal of Organic Evolution, 2003, 57 (1), pp.159-167. ⟨10.1111/j.0014-3820.2003.tb00225.x⟩
Article dans une revue istex hal-03270261 v1

Evolution of genome size in Drosophila. is the invader`s genome being invaded by transposable elements?

Cristina Vieira , C. Nardon , C. Arpin , D. Lepetit , C. Biémont
Molecular Biology and Evolution, 2002, 19, pp.1154-1161
Article dans une revue hal-00427308 v1

Transposable elements and genome evolution of invasive species: the case of Drosophila

C. Biémont , Cristina Vieira , N. Borie
Genetics Selection Evolution, 2001, 33, pp.S107-S120
Article dans une revue hal-00427156 v1

Genotype-environment interaction for quantitative trait loci affecting life span in Drosophila melanogaster

Cristina Vieira , E.G. Pasyukova , Z.B. Zeng , J.B. Hackett , R.F. Lyman et al.
Genetics, 2000, 154, pp.213-227
Article dans une revue hal-00427111 v1

High copy numbers of multiple transposable element families in an Australian population of Drosophila simulans

Cristina Vieira , G. Piganeau , C. Biemont
Genetical Research, 2000, 76, pp.117-119
Article dans une revue hal-00427118 v1

Deficiency mapping of quantitative trait loci affecting longevity in Drosophila melanogaster

E.G. Pasyukova , Cristina Vieira , T.F.C. Mackay
Genetics, 2000, 156, pp.1129-1146
Article dans une revue hal-00427095 v1
Image document

Transposable elements and genome evolution: the case of Drosophila simulans

Christian Biémont , Cristina Vieira , Nathalie Borie , David Lepetit
Genetica, 1999, 107, pp.113-120. ⟨10.1023/A:1003937603230⟩
Article dans une revue istex hal-03270220 v1

Wake up of transposable elements following Drosophila simulans worldwide colonization

Cristina Vieira , D. Lepetit , S. Dumont , C. Biémont
Molecular Biology and Evolution, 1999, 16 (9), pp.1251-1255. ⟨10.1093/oxfordjournals.molbev.a026215⟩
Article dans une revue hal-00428465 v1

A temperature cline in copy number for 412 but not roo/B104 retrotransposons in populations of Drosophila simulans

Cristina Vieira , P. Aubry , D. Lepetit , C. Biémont
Proceedings of the Royal Society B: Biological Sciences, 1998, 265 (1402), pp.1161-1165. ⟨10.1098/rspb.1998.0413⟩
Article dans une revue hal-00428504 v1

Accumulation of transposable elements in the heterochromatin and on the Y chromosome of Drosophila simulans and Drosophila melanogaster

N. Junakovic , A. Terrinoni , C. Di Franco , Cristina Vieira , C. Loevenbruck
Journal of Molecular Evolution, 1998, 46, pp.661-668
Article dans une revue hal-00428492 v1

Maintenance of transposable element copy number in natural populations of Drosophila melanogaster and D-simulans

C. Biémont , Cristina Vieira , C. Hoogland , G. Cizeron , C. Loevenbruck et al.
Genetica, 1997, 100, pp.161-166
Article dans une revue hal-00434972 v1

Transposable element distribution in Drosophila

C. Biémont , A. Tsitrone , Cristina Vieira , C. Hoogland
Genetics, 1997, 147, pp.1997-1999
Article dans une revue hal-00434964 v1

Chromosomal distribution of the 412 retrotransposon in natural populations of Drosophila simulans

C. Hoogland , Cristina Vieira , C. Biemont
Heredity, 1997, 79, pp.128-134
Article dans une revue hal-00434987 v1

Transposition rate of the 412 retrotransposable element is independent of copy number in natural populations of Drosophila simulans

Cristina Vieira , C. Biemont
Molecular Biology and Evolution, 1997, 14, pp.185-188
Article dans une revue hal-00434996 v1

Comportement de rétrotransposons (copia mdg1 gypsy et 412) dans les populations de Drosophila melanogaster et D. simulans

Cristina Vieira
incollection, 1996, --, pp.313-325
Article dans une revue hal-00435023 v1

Selection against transposable elements in D-simulans and D-melanogaster

Cristina Vieira , C. Biémont
Genetical Research, 1996, 68, pp.9-15
Article dans une revue hal-00435041 v1

Geographical variation in insertion site number of retrotransposon 412 in Drosophila simulans

Cristina Vieira , C. Biémont
Journal of Molecular Evolution, 1996, 42, pp.443-451
Article dans une revue hal-00435042 v1

Contribution of variable TE content on phenotype and plasticity in Drosophila melanogaster.

Anaïs Larue , Miriam Merenciano , S. Janillon , Marie Fablet , Patricia Gibert et al.
Conférence Jacques Monod Life is plastic, Jun 2024, Roscoff, France
Communication dans un congrès hal-04805331 v1

Contribution of variable TE content on phenotype and plasticity in Drosophila melanogaster.

Anaïs Larue , Miriam Merenciano , S. Janillon , Marie Fablet , Patricia Gibert et al.
Annual meeting of the Society of Molecular Biology and Evolution (SMBE), Jul 2024, Puerto Vallarta, Mexico
Communication dans un congrès hal-04805367 v1

Transposable element regulation in the cereal weevil Sitophilus oryzae and its potential association with an endosymbiotic bacteria

Elisa Dell’aglio , Clément Goubert , Mariana G. Ferrarini , Agnès Vallier , Caroline Blanc et al.
CNET (23d congrès national des éléments transposables), Jul 2022, Paris, France
Communication dans un congrès hal-04783612 v1

The assembly of the rice weevil Sitophilus oryzae is dominated by transposable elements and shades light on the evolution of endosymbiosis in a major crop pest.

Nicolas Parisot , Carlos Vargas-Chávez , Clément Goubert , Patrice Baa-Puyoulet , Severine Balmand et al.
Arthropod Genomics Symposium 2022, Jun 2022, Notre Dame (Indiana), United States
Communication dans un congrès hal-04783673 v1
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Syndrome de Klinefelter, rôle du chromosome Y dans l’espérance de vie humaine ?

Jordan Teoli , Claire Bardel , Marie Fablet , Gabriel Marais , François Gueyffier et al.
36ème Congrès de la Société Française d'Endocrinologie (SFE Marseille 2020), Oct 2020, Marseille, France. pp.194, ⟨10.1016/j.ando.2020.07.150⟩
Communication dans un congrès hal-03060317 v1

Transposable Element Dynamics in an Invasive Species

V. Mérel , Marie Fablet , M. Boulesteix , Arnaud A Estoup , Patricia Gibert et al.
Congrès National des Éléments Transposables (CNET 2018), Jul 2018, Clermont-Ferrand, France
Communication dans un congrès hal-02786547 v1

Les Ressources

Jean-Paul Bravard , Ioan Negrutiu , Natalia del Fatti , Cristina Vieira
Actes du Colloque de l'Institut Universitaire de France, 2011, Lyon, France. 356 p
Communication dans un congrès halshs-01315007 v1

Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system

Carole Vincent-Monégat , Mariana G. Ferrarini , Elisa Dell’aglio , Agnès Vallier , Severine Balmand et al.
8th International Symposium on Antimicrobial Peptides, Jun 2024, Marseille (13), France
Poster de conférence hal-04771905 v1

Contribution of TE to the phenotype and plasticity in Drosophila melanogaster

Anaïs Larue , Miriam Merenciano , S. Janillon , Camille Mayeux , Marie Fablet et al.
27th European Drosophila Conference, Oct 2024, Lyon, France
Poster de conférence hal-04783569 v1

Contribution of variable TE content on phenotype and plasticity in Drosophila melanogaster

Anaïs Larue , Miriam Merenciano , S. Janillon , Agnès Vallier , Marie Fablet et al.
International congress of transposable elements, Apr 2024, Saint-Malo, France
Poster de conférence hal-04788765 v1

Contribution of TE to the phenotype and plasticity in Drosophila melanogaster

Anaïs Larue , Miriam Merenciano , S. Janillon , Camille Mayeux , Marie Fablet et al.
CNET (24th congrès national des éléments transposables), Jul 2023, Perpignan, France
Poster de conférence hal-04790763 v1

High-throughput genomics and transcriptomics to decipher host-symbiont molecular dialogue in the cereal weevil Sitophilus oryzae and Sodalis pierantonius endosymbiotic association

Nicolas Parisot , Mariana Galvão Ferrarini , Clément Goubert , Carlos Vargas-Chávez , Agnès Vallier et al.
10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France
Poster de conférence hal-03810657 v1

Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system

Mariana G. Ferrarini , Elisa Dell’aglio , Agnès Vallier , Severine Balmand , Carole Vincent-Monégat et al.
10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France
Poster de conférence hal-04783698 v1

Transposable element dynamics in the host-bacteria association of the cereal weevil Sitophilus oryzae

Mariana G. Ferrarini , Clément Goubert , Nicolas Parisot , Carlos Vargas-Chávez , Agnès Vallier et al.
Mobile DNA 2021, Jun 2021, Virtual, France
Poster de conférence hal-04790867 v1

Transposable element dynamics in Sitophilus oryzae

Clément Goubert , Mariana G. Ferrarini , Agnès Vallier , Nicolas Parisot , Matthieu Boulesteix et al.
Auvergne Rhône-Alpes Regional Workshop on Microbiome, Nov 2019, Villeurbanne, France
Poster de conférence hal-04785024 v1

Transposable element dynamics and regulation in a major crop pest: Sitophilus oryzae.

Caroline Blanc , Théo Chancy , Agnès Vallier , Severine Balmand , Clément Goubert et al.
Congrès national sur les éléments transposables, Jul 2019, Lyon, France
Poster de conférence hal-04790834 v1

Discovering the link between insect symbiosis and transposable elements.

Théo Chancy , Caroline Blanc , Agnès Vallier , Mariana G. Ferrarini , Elisa Dell’aglio et al.
Crossroads between transposons and gene regulation, May 2019, London, United Kingdom
Poster de conférence hal-04790819 v1

Evaluating the essentiality of the primary endosymbiont of the rice weevil Sitophilus oryzae through genome analysis

Carlos Vargas-Chavez , Nicolas Parisot , C. Goubert , Patrice Baa-Puyoulet , Severine Balmand et al.
VI Meeting of the Spanish Society for Evolutionary Biology (SESBE), Jan 2018, Palma de Mallorca, Spain
Poster de conférence hal-03514015 v1

The draft genome sequence of the rice weevil Sitophilus oryzae as a model to explore the host-symbiont interactions in a nascent stage of endosymbiosis

Carlos Vargas-Chavez , Nicolas Parisot , Clément Goubert , Patrice Baa-Puyoulet , Severine Balmand et al.
Journées Ouvertes Biologie Informatique Mathématiques (JOBIM), Jun 2016, Lyon, France
Poster de conférence hal-03506786 v1

Epigenetics and genotypic variation

Miriam Merenciano , Anaïs Larue , Cristian Groza , Cristina Vieira , Rita Rebollo et al.
On Epigenetics and Evolution, Elsevier, pp.119-151, 2024, ⟨10.1016/B978-0-443-19051-3.00006-1⟩
Chapitre d'ouvrage hal-04632875 v1

Epigénétique et Eléments Transposables

Clémentine Vitte , Séverine Chambeyron , Cristina Vieira
Epigénétique en écologie et évolution, pp.95-116, 2024, 978-1-78948-216-4
Chapitre d'ouvrage hal-04938854 v1

Self and Nonself from a Genomic Perspective: Transposable Elements

Marie Fablet , Judit Salces-Ortiz , Bianca Fraga Menezes , Marlène Roy , Cristina Vieira
Evolutionary Biology: Self/Nonself Evolution, Species and Complex Traits Evolution, Methods and Concepts, 2 (5), Springer International Publishing, pp.111-128, 2017, ⟨10.1007/978-3-319-61569-1_6⟩
Chapitre d'ouvrage hal-03323222 v1

Exploring the role of transposable elements to sex gap in longevity in Drosophila species

Miriam Merenciano , Sonia Janillon , Camille Mermet-Bouvier , Nelly Burlet , Valentina Rodriguez-Rada et al.
2025
Pré-publication, Document de travail hal-04941501 v1
Image document

Footprints of worldwide adaptation in structured populations of D. melanogaster through the expanded DEST 2.0 genomic resource

Joaquin C. B. Nunez , Marta Coronado-Zamora , Mathieu Gautier , Martin Kapun , Sonja Steindl et al.
2024
Pré-publication, Document de travail hal-04779897 v1
Image document

Identification and quantification of transposable element transcripts using Long-Read RNA-seq in <i>Drosophila</i> germline tissues

Rita Rebollo , Pierre Gerenton , Eric Cumunel , Arnaud Mary , François Sabot et al.
2024
Pré-publication, Document de travail hal-04791876 v1
Image document

Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system

Mariana Galvão Ferrarini , Elisa Dell’aglio , Agnès Vallier , Séverine Balmand , Carole Vincent-Monégat et al.
2024
Pré-publication, Document de travail hal-04792685 v1

The transposable element-rich genome of the cereal pest Sitophilus oryzae

Nicolas Parisot , Carlos Vargas-Chavez , Clément Goubert , Patrice Baa-Puyoulet , Séverine Balmand et al.
2024
Pré-publication, Document de travail hal-04706472 v1
Image document

Drosophila suzukii oxidative stress response involves Jheh gene cluster but not transposable elements

Pierre Marin , Angelo Jacquet , Hélène Henri , Patricia Gibert , Cristina Vieira
2020
Pré-publication, Document de travail hal-03014540 v1