Cristina Vieira Cristina VIEIRA

Publications

Article dans une revue (108)

Transposable elements contribute to the evolution of host shift–related genes in cactophilic Drosophila species Daniel Siqueira de Oliveira,Anaïs Larue,William Vilas Boas Nunes,Francois Sabot,Alejandra Bodelónet al. Genome Research, 2026, 36 (3), pp.487-505. ⟨10.1101/gr.280463.125⟩ Article dans une revue hal-05539944v1
Male sterility in Drosophila hybrids revealed by a multi-generational transcriptomic analysis of genes and transposable elements in testes Alejandra Bodelón,Vicente Chillida,Daniel Siqueira de Oliveira,Cristina Vieira,Maria Pilar García Guerreiro BMC Biology, 2026, ⟨10.1186/s12915-026-02566-y⟩ Article dans une revue hal-05539948v1
Epigenetic Clock Analysis of Sex Chromosome Aneuploidies Joshua Zhang,Jordan Teoli,Benjamin Rey,Cristina Vieira,Jean‐françois Lemaitreet al. Aging Cell, 2025, 24 (11), pp.e70243. ⟨10.1111/acel.70243⟩ Article dans une revue hal-05299075v1
Gene and transposable element expression in response to stress in temperate and tropical populations of Drosophila Miriam Merenciano,Daniel Oliveira,Judit Salces-Ortiz,Rita Rebollo,Bianca Manfréet al. Mobile DNA, 2025, 16 (1), pp.35. ⟨10.1186/s13100-025-00372-x⟩ Article dans une revue hal-05299089v1
Continent-wide differentiation of fitness traits and patterns of climate adaptation among European populations of Drosophila melanogaster Esra Durmaz Mitchell,Envel Kerdaffrec,Ewan Harney,Tânia F. Paulo,Marija Savic Veselinovicet al. Evolution Letters, 2025, 9 (4), pp.473-490. ⟨10.1093/evlett/qraf014⟩ Article dans une revue hal-05151686v1
Sex-biased expression of genes and transposable elements in hybrids from Drosophila mojavensis and D. arizonae Maryanna Simão,Daniel Oliveira,William Nunes,Cecilia Banho,Mariana Ferrariniet al. Genome Biology and Evolution, 2025, ⟨10.1093/gbe/evaf247⟩ Article dans une revue hal-05449046v1
Footprints of Worldwide Adaptation in Structured Populations of Drosophila melanogaster Through the Expanded DEST 2.0 Genomic Resource Joaquin C. B. Nunez,Marta Coronado-Zamora,Mathieu Gautier,Martin Kapun,Sonja Steindlet al. Molecular Biology and Evolution, 2025, 42 (8), pp.msaf132. ⟨10.1093/molbev/msaf132⟩ Article dans une revue hal-04779897v2
Male sterility in Drosophila mojavensis × D. arizonae hybrids is not caused by gene movements in the Y chromosome Thyago Vanderlinde,Fabiana Uno,Gabriel Goldstein,François Sabot,Claudia Cararetoet al. Evolution - International Journal of Organic Evolution, 2025, ⟨10.1093/evolut/qpaf163⟩ Article dans une revue hal-05245261v1
Exploring the Relationship of Transposable Elements and Ageing: Causes and Consequences Miriam Merenciano,Anaïs Larue,Chloé Garambois,William Vilas Boas Nunes,Cristina Vieira Genome Biology and Evolution, 2025, 17 (6), ⟨10.1093/gbe/evaf088⟩ Article dans une revue hal-05150068v1
Transposable element expression is associated with sex chromosome number in humans Jordan Teoli,Miriam Merenciano,Marie Fablet,Anamaria Necsulea,Daniel Siqueira-De-Oliveiraet al. PLoS Genetics, 2025, 21 (6), pp.e1011668. ⟨10.1371/journal.pgen.1011668⟩ Article dans une revue hal-05183750v1
Identification and quantification of transposable element transcripts using Long-Read RNA-seq in Drosophila germline tissues Rita Rebollo,Pierre Gerenton,Eric Cumunel,Arnaud Mary,François Sabotet al. Peer Community Journal, 2024, 4 (e89), ⟨10.24072/pcjournal.457⟩ Article dans une revue hal-04285238v1
The for gene as one of the drivers of foraging variations in a parasitic wasp Aurore Gallot,Emmanuel Desouhant,Vincent Lhuillier,David Lepetit,Adil El Filaliet al. Molecular Ecology, 2023, 32 (7), pp.1760-1776. ⟨10.1111/mec.16834⟩ Article dans une revue hal-04607836v1
A quantitative, genome-wide analysis in Drosophila reveals transposable elements’ influence on gene expression is species-specific Marie Fablet,Judit Salces-Ortiz,Angelo Jacquet,Bianca Menezes,Corentin Dechaudet al. Genome Biology and Evolution, 2023, 15 (9), pp.evad160. ⟨10.1093/gbe/evad160⟩ Article dans une revue hal-04195964v1
Sex differences in adult lifespan and aging rate across mammals: A test of the ‘Mother Curse hypothesis’ Hugo Cayuela,Jean-Michel Gaillard,Cristina Vieira,Victor Ronget,Jérôme M.W. Gippetet al. Mechanisms of Ageing and Development, 2023, 212, pp.111799. ⟨10.1016/j.mad.2023.111799⟩ Article dans une revue hal-04077310v1
ChimeraTE: a pipeline to detect chimeric transcripts derived from genes and transposable elements Daniel Oliveira,Marie Fablet,Anaïs Larue,Agnès Vallier,Claudia Cararetoet al. Nucleic Acids Research, In press, 51 (18), pp.9764-9784. ⟨10.1093/nar/gkad671⟩ Article dans une revue hal-04195961v1
A comprehensive evolutionary scenario for the origin and neofunctionalization of the Drosophila speciation gene Odysseus (OdsH) William Vilas Boas Nunes,Daniel Siqueira de Oliveira,Guilherme de Rezende Dias,Antonio Bernardo Carvalho,Ícaro Putinhon Carusoet al. G3, 2023, 14 (3), pp.jkad299. ⟨10.1093/g3journal/jkad299⟩ Article dans une revue hal-04400854v1
Transposable element expression with variation in sex chromosome number: insights into a toxic Y effect on human longevity Jordan Teoli,Miriam Merenciano,Marie Fablet,Anamaria Necsulea,Daniel Siqueira-De-Oliveiraet al. Peer Community In Genomics, 2023, ⟨10.1101/2023.08.03.550779⟩ Article dans une revue hal-04923419v1
Impact of Heat Stress on Transposable Element Expression and Derived Small RNAs in Drosophila subobscura Alejandra Bodelón,Marie Fablet,Daniel Siqueira de Oliveira,Cristina Vieira,Maria Pilar García Guerreiro Genome Biology and Evolution, 2023, 15 (11), pp.evad189. ⟨10.1093/gbe/evad189⟩ Article dans une revue hal-04276658v1
Sex‐related differences in aging rate are associated with sex chromosome system in amphibians Hugo Cayuela,Jean-François Lemaître Lemaître,Jean‐paul Léna,Victor Ronget,Iñigo Martínez‐solanoet al. Evolution - International Journal of Organic Evolution, 2022, 76 (2), pp.346-356. ⟨10.1111/evo.14410⟩ Article dans une revue hal-03644431v1
High Stability of the Epigenome in &lt;i&gt;Drosophila&lt;/i&gt; Interspecific Hybrids Alejandra Bodelón,Marie Fablet,Philippe Veber,Cristina Vieira,Maria Pilar García Guerreiro Genome Biology and Evolution, 2022, 14 (2), ⟨10.1093/gbe/evac024⟩ Article dans une revue hal-03594035v1
Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system Mariana Galvão Ferrarini,Elisa Dell’aglio,Agnès Vallier,Severine Balmand,Carole Vincent-Monégatet al. Microbiome, 2022, 10 (1), pp.156. ⟨10.1186/s40168-022-01334-8⟩ Article dans une revue hal-03839252v1
Oxidative and radiation stress induces transposable element transcription in Drosophila melanogaster Daniel Siqueira de Oliveira,Marcos Trindade Rosa,Cristina Vieira,Elgion Loreto Journal of Evolutionary Biology, 2021, 34 (4), pp.628-638. ⟨10.1111/jeb.13762⟩ Article dans une revue hal-04809005v1
The transposable element-rich genome of the cereal pest Sitophilus oryzae Nicolas Parisot,Carlos Vargas-Chávez,Clément Goubert,Patrice Baa-Puyoulet,Séverine Balmandet al. BMC Biology, 2021, 19 (1), pp.241. ⟨10.1186/s12915-021-01158-2⟩ Article dans une revue hal-03627264v1
The discovery, distribution and diversity of DNA viruses associated with Drosophila melanogaster in Europe Megan Wallace,Kelsey Coffman,Clément Gilbert,Sanjana Ravindran,Gregory Alberyet al. Virus Evolution, 2021, 7 (1), pp.veab031. ⟨10.1093/ve/veab031⟩ Article dans une revue hal-03229780v1
Comparative transcriptomics between Drosophila mojavensis and D. arizonae reveals transgressive gene expression and underexpression of spermatogenesis-related genes in hybrid testes Cecilia Banho,Vincent Mérel,Thiago Oliveira,Claudia Carareto,Cristina Vieira Scientific Reports, 2021, 11 (1), pp.9844. ⟨10.1038/s41598-021-89366-2⟩ Article dans une revue hal-04809001v1
Transposable Element Expression and Regulation Profile in Gonads of Interspecific Hybrids of Drosophila arizonae and Drosophila mojavensis wrigleyi Cecília Artico Banho,Daniel Siqueira Oliveira,Annabelle Haudry,Marie Fablet,Cristina Vieiraet al. Cells, 2021, 10 (12), pp.3574. ⟨10.3390/cells10123574⟩ Article dans une revue hal-03628009v1
The Worldwide Invasion of Drosophila suzukii Is Accompanied by a Large Increase of Transposable Element Load and a Small Number of Putatively Adaptive Insertions Vincent Mérel,Patricia Gibert,Inessa Buch,Valentina Rodriguez Rada,Arnaud Estoupet al. Molecular Biology and Evolution, 2021, 38 (10), pp.4252-4267. ⟨10.1093/molbev/msab155⟩ Article dans une revue hal-03417234v1
Phenotypic and Transcriptomic Responses to Stress Differ According to Population Geography in an Invasive Species Pierre Marin,Angelo Jaquet,Justine Picarle,Marie Fablet,Vincent Merelet al. Genome Biology and Evolution, 2021, 13 (9), pp.evab208. ⟨10.1093/gbe/evab208⟩ Article dans une revue hal-03417240v1
Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses Martin Kapun,Maite G Barrón,Fabian Staubach,Darren J Obbard,R Axel W Wiberget al. Molecular Biology and Evolution, 2020, 37 (9), pp.2661-2678. ⟨10.1093/molbev/msaa120⟩ Article dans une revue hal-04615912v2
Biological Invasion: The Influence of the Hidden Side of the (Epi)Genome Pierre Marin,Julien Genitoni,Dominique D. Barloy,Stéphane Maury,Patricia Gibertet al. Functional Ecology, 2020, 34 (2), pp.385-400. ⟨10.1111/1365-2435.13317⟩ Article dans une revue (article de synthèse) hal-02063295v1
Homology-Free Detection of Transposable Elements Unveils Their Dynamics in Three Ecologically Distinct Rhodnius Species Marcelo Castro,Clément Goubert,Fernando Monteiro,Cristina Vieira,Claudia Carareto Genes, 2020, Population and Evolutionary Genetics and Genomics, 11 (2), pp.170. ⟨10.3390/genes11020170⟩ Article dans une revue hal-02487180v1
Transposable elements in Drosophila Vincent Mérel,Matthieu Boulesteix,Marie Fablet,Cristina Vieira Mobile DNA, 2020, 11 (1), ⟨10.1186/s13100-020-00213-z⟩ Article dans une revue hal-02957906v1
A transposon story : from TE content to TE dynamic invasion of Drosophila genomes using the single-molecule sequencing technology from Oxford Nanopore Mohamed Mourdas,Nguyet Thi-Minh Dang,Yuki Ogyama,Nelly Burlet,Bruno Mugatet al. Cells, 2020, 9 (8), pp.1776. ⟨10.3390/cells9081776⟩ Article dans une revue hal-02905128v1
Dynamic Interactions Between the Genome and an Endogenous Retrovirus: Tirant in Drosophila simulans Wild-Type Strains Marie Fablet,Angelo Jacquet,Rita Rebollo,Annabelle A. Haudry,Carine Reyet al. G3, 2019, 9 (3), pp.855-865. ⟨10.1534/g3.118.200789⟩ Article dans une revue hal-02004384v1
On the Importance to Acknowledge Transposable Elements in Epigenomic Analyses Emmanuelle Lerat,Josep Casacuberta,Cristian Chaparro,Cristina Vieira Genes, 2019, 10 (4), pp.258. ⟨10.3390/genes10040258⟩ Article dans une revue hal-02093613v1
An attempt to select non-genetic variation in resistance to starvation and reduced chill coma recovery time in Drosophila melanogaster Bianca Menezes,Judit Salces-Ortiz,Héloise Muller,Nelly Burlet,Sonia Martinezet al. Journal of Experimental Biology, 2018, 221 (23), pp.jeb186254. ⟨10.1242/jeb.186254⟩ Article dans une revue hal-01965032v1
Sex gap in aging and longevity: can sex chromosomes play a role? Gabriel A.B. Marais,Jean-Michel Gaillard,Cristina Vieira,Ingrid Plotton,Damien Sanlavilleet al. Biology of Sex Differences, 2018, 9 (1), pp.1-14. ⟨10.1186/s13293-018-0181-y⟩ Article dans une revue hal-01965036v1
Stress affects the epigenetic marks added by natural transposable element insertions in Drosophila melanogaster Lain Guio,Cristina Vieira,Josefa González Scientific Reports, 2018, 8 (1), pp.1-10. ⟨10.1038/s41598-018-30491-w⟩ Article dans une revue hal-01965035v1
Genetic exchange in eukaryotes through horizontal transfer: connected by the mobilome Gabriel Luz Wallau,Cristina Vieira,Élgion Lúcio Silva Loreto Mobile DNA, 2018, 9 (1), pp.1-16. ⟨10.1186/s13100-018-0112-9⟩ Article dans une revue hal-01965038v1
Population specific dynamics and selection patterns of transposable element insertions in European natural populations Emmanuelle Lerat,Clément Goubert,Sara Guirao-Rico,Miriam Merenciano,Anne-Béatrice Dufouret al. Molecular Ecology, 2018, pp.1-17. ⟨10.1111/mec.14963⟩ Article dans une revue hal-01965027v1
TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes Emmanuelle Lerat,Marie Fablet,Laurent Modolo,Hélène Lopez-Maestre,Cristina Vieira Nucleic Acids Research, 2017, 45, pp.13. ⟨10.1093/nar/gkw953⟩ Article dans une revue hal-01524877v1
Identification of misexpressed genetic elements in hybrids between Drosophila-related species Hélène Lopez-Maestre,Elias Alberto Gutierrez Carnelossi,Vincent Lacroix,Nelly Burlet,Bruno Mugatet al. Scientific Reports, 2017, 7, pp.40618. ⟨10.1038/srep40618⟩ Article dans une revue hal-01524879v2
Less effective selection leads to larger genomes Tristan Lefébure,Claire Morvan,Florian Malard,Clémentine François,Lara Konecny-Dupréet al. Genome Research, 2017, 27, pp.1016-1028. ⟨10.1101/gr.212589.116⟩ Article dans une revue hal-01544879v2
Transposable Element Misregulation Is Linked to the Divergence between Parental piRNA Pathways in Drosophila Hybrids Valèria Romero-Soriano,Laurent Modolo,Hélène Lopez-Maestre,Bruno Mugat,Eugénie Pessiaet al. Genome Biology and Evolution, 2017, 9 (6), pp.1450 - 1470. ⟨10.1093/gbe/evx091⟩ Article dans une revue hal-01596041v1
High-Throughput Sequencing of Transposable Element Insertions Suggests Adaptive Evolution of the Invasive Asian Tiger Mosquito Towards Temperate Environments Clément Goubert,Hélène Henri,Guillaume Minard,Claire Valiente Moro,Patrick Mavinguiet al. Molecular Ecology, 2017, 26 (15), pp.1-14. ⟨10.1111/mec.14184⟩ Article dans une revue hal-01546749v1
SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence Hélène Lopez-Maestre,Lilia Brinza,Camille Marchet,Janice Kielbassa,Sylvère Bastienet al. Nucleic Acids Research, 2016, ⟨10.1093/nar/gkw655⟩ Article dans une revue hal-01352586v1
Population genetics of the Asian tiger mosquito Aedes albopictus, an invasive vector of human diseases C. Goubert,G. Minard,Cristina Vieira,Matthieu Boulesteix Heredity, 2016, 117 (3), pp.125-34. ⟨10.1038/hdy.2016.35⟩ Article dans une revue (article de synthèse) hal-02012374v1
Is genome size of Lepidoptera linked to host plant range? P. A. Calatayud,C. Petit,N. Burlet,S. Dupas,N. Glaseret al. Entomologia Experimentalis et Applicata, 2016, 159 (3), pp.354-361. ⟨10.1111/eea.12446⟩ Article dans une revue istex hal-02016410v1
Drosophila Females Undergo Genome Expansion after Interspecific Hybridization Valèria Romero-Soriano,Nelly Burlet,Doris Vela,Antonio Fontdevila,Cristina Vieiraet al. Genome Biology and Evolution, 2016, 8 (3), pp.556-561. ⟨10.1093/gbe/evw024⟩ Article dans une revue hal-01352572v1
De novo assembly and annotation of the Asian tiger mosquito (&lt;em&gt;Aedes albopictus&lt;/em&gt;) repeatome with dnaPipeTE from raw genomic reads and comparative analysis with the yellow fever mosquito (&lt;em&gt;Aedes aegypti&lt;/em&gt;) Clément Goubert,Laurent Modolo,Cristina Vieira,Claire Valiente Moro,Patrick Mavinguiet al. Genome Biology and Evolution, 2015, 7 (4), pp.1192-1205. ⟨10.1093/gbe/evv050⟩ Article dans une revue hal-02637041v1
De novo assembly and annotation of the Asian tiger mosquito (Aedes albopictus) repeatome with dnaPipeTE from raw genomic reads and comparative analysis with the yellow fever mosquito (Aedes aegypti). Clément Goubert,Laurent Modolo,Cristina Vieira,Claire Valientemoro,Patrick Mavinguiet al. Genome Biology and Evolution, 2015, 7 (4), pp.1192-205 Article dans une revue hal-01227710v1
Specific Activation of an I-Like Element in Drosophila Interspecific Hybrids Elias a G Carnelossi,Emmanuelle Lerat,Hélène Henri,Sonia Martinez,Claudia M A Cararetoet al. Genome Biology and Evolution, 2014, 6, pp.1806 - 1817. ⟨10.1093/gbe/evu141⟩ Article dans une revue hal-01526700v1
Exposure to hycanthone alters chromatin structure around specific gene functions and specific repeats in Schistosoma mansoni. David Roquis,Julie M. J. Lepesant,Emanuel Villafan,Jérôme Boissier,Cristina Vieiraet al. Frontiers in Genetics, 2014, 5, pp.207. ⟨10.3389/fgene.2014.00207⟩ Article dans une revue hal-01112701v1
A Genome-Wide Survey of Genetic Instability by Transposition in Drosophila Hybrids Doris Vela,Antonio Fontdevila,Cristina Vieira,García Guerreiro María Pilar PLoS ONE, 2014, 9, pp.87 - 87. ⟨10.1371/journal.pone.0088992.s005⟩ Article dans une revue hal-01526703v1
Genomic regions harboring insecticide resistance-associated Cyp genes are enriched by transposable element fragments carrying putative transcription factor binding sites in two sibling Drosophila species Claudia M A Carareto,Eric H Hernandez,Cristina Vieira Gene, 2014, 537 (1), pp.93-99. ⟨10.1016/j.gene.2013.11.080⟩ Article dans une revue hal-00922703v1
The Drosophila Su(var)3–7 Gene Is Required for Oogenesis and Female Fertility, Genetically Interacts with piwi and aubergine, but Impacts Only Weakly Transposon Silencing Denis Basquin,Anne Spierer,Flora Begeot,Dmitry E Koryakov,Anne-Laure Todeschiniet al. PLoS ONE, 2014, 9 (5), pp.e96802. ⟨10.1371/journal.pone.0096802⟩ Article dans une revue hal-01092623v2
Variable expression levels detected in the Drosophila effectors of piRNA biogenesis Marie Fablet,Abdou Akkouche,Virginie Braman,Cristina Vieira Gene, 2014, 537 (1), pp.149-153. ⟨10.1016/j.gene.2013.11.095⟩ Article dans une revue hal-00922704v1
Could interallelic interactions be a key to the epigenetic aspects of fitness-trait inbreeding depression? C. Biemont,Cristina Vieira Heredity, 2014, 112, pp.219-20. ⟨10.1038/hdy.2013.80⟩ Article dans une revue hal-02072957v1
Maternally deposited germline piRNAs silence the tirant retrotransposon in somatic cells Abdou Akkouche,Thomas Grentzinger,Marie Fablet,Claudia Armenise,Nelly Burletet al. EMBO Reports, 2013, 14 (5), pp.458-64. ⟨10.1038/embor.2013.38⟩ Article dans une revue hal-00850319v1
New national and regional bryophyte records, 31 L. T. Ellis,Autun L. Alegro,Halina Bednarek-Ochyra,Ryszard Ochyra,A. Bergaminiet al. Journal of Bryology, 2012, 34 (2), pp.123-134. ⟨10.1179/1743282012Y.0000000009⟩ Article dans une revue hal-00739019v1
Transposon proliferation in an asexual parasitoid. Ken Kraaijeveld,Brechtje Zwanenburg,Benjamin Hubert,Cristina Vieira,Sylvia de Pateret al. Molecular Ecology, 2012, 21 (16), pp.3898-3906. ⟨10.1111/j.1365-294X.2012.5582.x⟩ Article dans une revue hal-00850325v1
tirant, a newly discovered active endogenous retrovirus in Drosophila simulans. Abdou Akkouche,Rita Rebollo,Nelly Burlet,Caroline Esnault,Sonia Martinezet al. Journal of Virology, 2012, 86 (7), pp.3675-3681. ⟨10.1128/JVI.07146-11⟩ Article dans une revue hal-00763499v1
A snapshot of histone modifications within transposable elements in Drosophila wild type strains. Rita Rebollo,Béatrice Horard,Flora Begeot,Marion Delattre,Eric Gilsonet al. PLoS ONE, 2012, 7 (9), pp.1-7. ⟨10.1371/journal.pone.0044253⟩ Article dans une revue hal-00850321v1
International Congress on Transposable Elements (ICTE) 2012 in Saint Malo and the sea of TE stories. Abdelkader Aïnouche,Mireille Bétermier,Mick Chandler,Richard Cordaux,Gaël Cristofariet al. Mobile DNA, 2012, 3 (1), pp.17. ⟨10.1186/1759-8753-3-17⟩ Article dans une revue inserm-00764323v1
A comparative analysis of the amounts and dynamics of transposable elements in natural populations of Drosophila melanogaster and Drosophila simulans. Cristina Vieira,Marie Fablet,Emmanuelle Lerat,Matthieu Boulesteix,Rita Rebolloet al. Journal of Environmental Radioactivity, 2012, 113, pp.83-86. ⟨10.1016/j.jenvrad.2012.04.001⟩ Article dans une revue hal-00763500v1
Vertical inheritance and bursts of transposition have shaped the evolution of the BS non-LTR retrotransposon in Drosophila. Adriana Granzotto,Fabrício R Lopes,Cristina Vieira,Claudia M A Carareto Molecular Genetics and Genomics, 2011, 286 (1), pp.57-66. ⟨10.1007/s00438-011-0629-9⟩ Article dans une revue istex hal-00850379v1
Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes. Emmanuelle Lerat,Nelly Burlet,Christian Biémont,Cristina Vieira Gene, 2011, 473 (2), pp.100-9. ⟨10.1016/j.gene.2010.11.009⟩ Article dans une revue istex hal-00850380v1
Medicago truncatula contains a second gene encoding a plastid located glutamine synthetase exclusively expressed in developing seeds Ana Seabra,Cristina Vieira,Julie Vera Cullimore,Helena Carvalho BMC Plant Biology, 2010, 10 (183), 16 p. ⟨10.1186/1471-2229-10-183⟩ Article dans une revue hal-02659780v1
Jumping genes and epigenetics: Towards new species. Rita Rebollo,Béatrice Horard,Benjamin Hubert,Cristina Vieira Gene, 2010, 454 (1-2), pp.1-7. ⟨10.1016/j.gene.2010.01.003⟩ Article dans une revue (article de synthèse) istex hal-00850384v1
Genes devoid of full-length transposable element insertions are involved in development and in the regulation of transcription in human and closely related species. Hussein Mortada,Cristina Vieira,Emmanuelle Lerat Journal of Molecular Evolution, 2010, 71 (3), pp.180-91. ⟨10.1007/s00239-010-9376-5⟩ Article dans une revue istex hal-00850383v1
The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes. Adriana Granzotto,Fabrício R Lopes,Emmanuelle Lerat,Cristina Vieira,Claudia M A Carareto BMC Evolutionary Biology, 2009, 9, pp.174. ⟨10.1186/1471-2148-9-174⟩ Article dans une revue hal-00850397v1
Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila. Marie Fablet,Emmanuelle Lerat,Rita Rebollo,Béatrice Horard,Nelly Burletet al. FASEB Journal, 2009, 23 (5), pp.1482-9. ⟨10.1096/fj.08-123513⟩ Article dans une revue hal-00850396v1
Infra- and Transspecific Clues to Understanding the Dynamics of Transposable Elements Cristina Vieira,M. Fablet,E. Lerat genome dyn stab, 2009, --, pp.115-123 Article dans une revue hal-00428338v1
Genomic environment influences the dynamics of the &lt;i&gt;tirant&lt;/i&gt; LTR retrotransposon in &lt;i&gt;Drosophila&lt;/i&gt; M. Fablet,E. Lerat,R. Rebollo,B. Horard,N. Burletet al. FASEB Journal, 2009, 23, pp.54-62 Article dans une revue hal-00428323v1
Identification of expressed transposable element insertions in the sequenced genome of &lt;i&gt;Drosophila melanogaster&lt;/i&gt; M. Deloger,F.M.G. Cavalli,E. Lerat,C. Biémont,M.-F. Sagotet al. Gene, 2009, 439, pp.55-62 Article dans une revue hal-00428351v1
Losing helena: The extinction of a drosophila line-like element Rita Rebollo,Emmanuelle Lerat,Liliana Lopez Kleine,Christian Biémont,Cristina Vieira BMC Genomics, 2008, 9, pp.1-11. ⟨10.1186/1471-2164-9-149⟩ Article dans une revue hal-02668006v1
[Prophylaxis of thromboembolic disease in obstetrics after the French guidelines publication] C. Chauleur,Cristina Vieira,P. Seffert Gynécologie Obstétrique & Fertilité, 2008, 36 (1), pp.23-34. ⟨10.1016/j.gyobfe.2007.07.043⟩ Article dans une revue istex ujm-00440346v1
The heterochromatic copies of the LTR retrotransposons as a record of the genomic events that have shaped the &lt;i&gt;D&lt;/i&gt;rosophila melanogaster genome N. Mugnier,Laurent Guéguen,Cristina Vieira,C. Biémont Gene, 2008, 411, pp.87-93 Article dans une revue hal-00428114v1
Mitspieler der Evolution C. Biémont,Cristina Vieira Spektrum der Wissenschaft, 2007, S44, pp.44-49 Article dans une revue hal-00434754v1
Evolutionary Pathways of the tirant LTR Retrotransposon in the &lt;i&gt;Drosophila melanogaster&lt;/i&gt; Subgroup of Species M. Fablet,S. Souames,C. Biémont,Cristina Vieira Journal of Molecular Evolution, 2007, 64, pp.438-447 Article dans une revue hal-00434598v1
The evolution of retrotransposon regulatory regions and its consequences on the Drosophila melanogaster and Homo sapiens host genomes Marie Fablet,Rita Rebollo,Christian Biémont,Cristina Vieira Gene, 2007, 390 (1-2), pp.84-91. ⟨10.1016/j.gene.2006.08.005⟩ Article dans une revue istex hal-02665818v1
Junk DNA as an evolutionary force C. Biémont,Cristina Vieira Nature, 2006, 443, pp.521-524 Article dans une revue hal-00427901v1
Ongoing loss of the tirant transposable element in natural populations of &lt;i&gt;Drosophila simulans&lt;/i&gt; M. Fablet,J.F. Donald,C. Biémont,Cristina Vieira Gene, 2006, 375, pp.54-62 Article dans une revue hal-00427929v1
What transposable elements tell us about genome organization and evolution: the case of &lt;i&gt;Drosophila&lt;/i&gt; C. Biémont,Cristina Vieira Cytogenetics and Genome Researchearch, 2005, 110, pp.25-34 Article dans une revue hal-00427833v1
New regulatory regions of &lt;i&gt;Drosophila 412&lt;/i&gt; retrotransposable element generated by recombination N. Mugnier,C. Biémont,Cristina Vieira Molecular Biology and Evolution, 2005, 22, pp.747-757 Article dans une revue hal-00427792v1
Is genome size influenced by colonization of new environments in dipteran species ? C. Nardon,G. Deceliere,C. Loevenbruck,M. Weiss,Cristina Vieiraet al. Molecular Ecology, 2005, 14, pp.869-878 Article dans une revue hal-00427794v1
Transposable element dynamics in two sibling species: &lt;i&gt;Drosophila melanogaster&lt;/i&gt; and &lt;i&gt;Drosophila simulans&lt;/i&gt; Cristina Vieira,C. Biémont Genetica, 2004, 120, pp.115-123 Article dans une revue hal-00427674v1
L`influence des éléments transposables sur la taille des génomes C. Biémont,Cristina Vieira Journal de la Société de Biologie, 2004, 198, pp.413-417 Article dans une revue hal-00427507v1
WORLDWIDE DISTRIBUTION OF TRANSPOSABLE ELEMENT COPY NUMBER IN NATURAL POPULATIONS OF DROSOPHILA SIMULANS Christian Biémont,Christiane Nardon,Grégory Deceliere,David Lepetit,Catherine Lœvenbrucket al. Evolution - International Journal of Organic Evolution, 2003, 57 (1), pp.159-167. ⟨10.1111/j.0014-3820.2003.tb00225.x⟩ Article dans une revue istex hal-03270261v1
Variation of the genome size estimate with environmental conditions in Drosophila melanogaster C. Nardon,M. Weiss,Cristina Vieira,C. Biémont Cytometry - Part A, 2003, 55A, pp.43-49 Article dans une revue hal-00427444v1
Variation of the genome size estimate with environmental conditions in Drosophila melanogaster. Christiane Nardon,Michèle Weiss,Cristina Vieira,Christian Biémont Cytometry Part A, 2003, 55 (1), pp.43-9. ⟨10.1002/cyto.a.10061⟩ Article dans une revue hal-00294849v1
Worldwide distribution of transposable element copy number in natural populations of Drosophila simulans C. Biémont,C. Nardon,G. Deceliere,D. Lepetit,C. Loevenbrucket al. Evolution - International Journal of Organic Evolution, 2003, 57, pp.159-167 Article dans une revue hal-00427365v1
Evolution of genome size in Drosophila. is the invader`s genome being invaded by transposable elements? Cristina Vieira,C. Nardon,C. Arpin,D. Lepetit,C. Biémont Molecular Biology and Evolution, 2002, 19, pp.1154-1161 Article dans une revue hal-00427308v1
Transposable elements and genome evolution of invasive species: the case of Drosophila C. Biémont,Cristina Vieira,N. Borie Genetics Selection Evolution, 2001, 33, pp.S107-S120 Article dans une revue hal-00427156v1
Deficiency mapping of quantitative trait loci affecting longevity in Drosophila melanogaster E.G. Pasyukova,Cristina Vieira,T.F.C. Mackay Genetics, 2000, 156, pp.1129-1146 Article dans une revue hal-00427095v1
Genotype-environment interaction for quantitative trait loci affecting life span in Drosophila melanogaster Cristina Vieira,E.G. Pasyukova,Z.B. Zeng,J.B. Hackett,R.F. Lymanet al. Genetics, 2000, 154, pp.213-227 Article dans une revue hal-00427111v1
High copy numbers of multiple transposable element families in an Australian population of Drosophila simulans Cristina Vieira,G. Piganeau,C. Biemont Genetical Research, 2000, 76, pp.117-119 Article dans une revue hal-00427118v1
Transposable elements and genome evolution: the case of Drosophila simulans Christian Biémont,Cristina Vieira,Nathalie Borie,David Lepetit Genetica, 1999, 107, pp.113-120. ⟨10.1023/A:1003937603230⟩ Article dans une revue istex hal-03270220v1
Wake up of transposable elements following Drosophila simulans worldwide colonization Cristina Vieira,D. Lepetit,S. Dumont,C. Biémont Molecular Biology and Evolution, 1999, 16 (9), pp.1251-1255. ⟨10.1093/oxfordjournals.molbev.a026215⟩ Article dans une revue hal-00428465v1
A temperature cline in copy number for 412 but not roo/B104 retrotransposons in populations of Drosophila simulans Cristina Vieira,P. Aubry,D. Lepetit,C. Biémont Proceedings of the Royal Society B: Biological Sciences, 1998, 265 (1402), pp.1161-1165. ⟨10.1098/rspb.1998.0413⟩ Article dans une revue hal-00428504v1
Accumulation of transposable elements in the heterochromatin and on the Y chromosome of Drosophila simulans and Drosophila melanogaster N. Junakovic,A. Terrinoni,C. Di Franco,Cristina Vieira,C. Loevenbruck Journal of Molecular Evolution, 1998, 46, pp.661-668 Article dans une revue hal-00428492v1
Maintenance of transposable element copy number in natural populations of Drosophila melanogaster and D-simulans C. Biémont,Cristina Vieira,C. Hoogland,G. Cizeron,C. Loevenbrucket al. Genetica, 1997, 100, pp.161-166 Article dans une revue hal-00434972v1
Transposable element distribution in Drosophila C. Biémont,A. Tsitrone,Cristina Vieira,C. Hoogland Genetics, 1997, 147, pp.1997-1999 Article dans une revue hal-00434964v1
Chromosomal distribution of the 412 retrotransposon in natural populations of Drosophila simulans C. Hoogland,Cristina Vieira,C. Biemont Heredity, 1997, 79, pp.128-134 Article dans une revue hal-00434987v1
Transposition rate of the 412 retrotransposable element is independent of copy number in natural populations of Drosophila simulans Cristina Vieira,C. Biemont Molecular Biology and Evolution, 1997, 14, pp.185-188 Article dans une revue hal-00434996v1
Comportement de rétrotransposons (copia mdg1 gypsy et 412) dans les populations de Drosophila melanogaster et D. simulans Cristina Vieira incollection, 1996, --, pp.313-325 Article dans une revue hal-00435023v1
Selection against transposable elements in D-simulans and D-melanogaster Cristina Vieira,C. Biémont Genetical Research, 1996, 68, pp.9-15 Article dans une revue hal-00435041v1
Geographical variation in insertion site number of retrotransposon 412 in Drosophila simulans Cristina Vieira,C. Biémont Journal of Molecular Evolution, 1996, 42, pp.443-451 Article dans une revue hal-00435042v1

Communication dans un congrès (8)

Contribution of variable TE content on phenotype and plasticity in Drosophila melanogaster. Anaïs Larue,Miriam Merenciano,S. Janillon,Marie Fablet,Patricia Gibertet al. Conférence Jacques Monod Life is plastic, Jun 2024, Roscoff, France Communication dans un congrès hal-04805331v1
Contribution of variable transposable element content on phenotype and plasticity in Drosophila melanogaster Anais Larue,Miriam Merenciano,S. Janillon,Alexander Mauro,Agnès Vallieret al. GDR Mobil'ET, Dec 2024, Paris, France Communication dans un congrès hal-05419615v1
Contribution of variable TE content on phenotype and plasticity in Drosophila melanogaster. Anaïs Larue,Miriam Merenciano,S. Janillon,Marie Fablet,Patricia Gibertet al. Annual meeting of the Society of Molecular Biology and Evolution (SMBE), Jul 2024, Puerto Vallarta, Mexico Communication dans un congrès hal-04805367v1
Transposable element regulation in the cereal weevil Sitophilus oryzae and its potential association with an endosymbiotic bacteria Elisa Dell’aglio,Clément Goubert,Mariana G. Ferrarini,Agnès Vallier,Caroline Blancet al. CNET (23d congrès national des éléments transposables), Jul 2022, Paris, France Communication dans un congrès hal-04783612v1
The assembly of the rice weevil Sitophilus oryzae is dominated by transposable elements and shades light on the evolution of endosymbiosis in a major crop pest. Nicolas Parisot,Carlos Vargas-Chávez,Clément Goubert,Patrice Baa-Puyoulet,Severine Balmandet al. Arthropod Genomics Symposium 2022, Jun 2022, Notre Dame, United States Communication dans un congrès hal-04783673v1
Syndrome de Klinefelter, rôle du chromosome Y dans l’espérance de vie humaine ? Jordan Teoli,Claire Bardel,Marie Fablet,Gabriel Marais,François Gueyffieret al. 36ème Congrès de la Société Française d'Endocrinologie (SFE Marseille 2020), Oct 2020, Marseille, France. pp.194, ⟨10.1016/j.ando.2020.07.150⟩ Communication dans un congrès hal-03060317v1
Transposable Element Dynamics in an Invasive Species V. Mérel,Marie Fablet,M. Boulesteix,Arnaud A Estoup,Patricia Gibertet al. Congrès National des Éléments Transposables (CNET 2018), Jul 2018, Clermont-Ferrand, France Communication dans un congrès hal-02786547v1
Les Ressources Jean-Paul Bravard,Ioan Negrutiu,Natalia del Fatti,Cristina Vieira Actes du Colloque de l'Institut Universitaire de France, 2011, Lyon, France. 356 p Communication dans un congrès halshs-01315007v1

Poster de conférence (13)

Contribution of variable transposable element content on phenotype and plasticity in Drosophila melanogaster Anais Larue,Miriam Merenciano,S. Janillon,Alexander Mauro,Agnès Vallieret al. Decryp'thèse, Feb 2025, Villeurbanne, France Poster de conférence hal-05419627v1
Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system Carole Vincent-Monégat,Mariana G. Ferrarini,Elisa Dell’aglio,Agnès Vallier,Severine Balmandet al. 8th International Symposium on Antimicrobial Peptides, Jun 2024, Marseille (13), France Poster de conférence hal-04771905v1
Contribution of TE to the phenotype and plasticity in Drosophila melanogaster Anaïs Larue,Miriam Merenciano,S. Janillon,Camille Mayeux,Marie Fabletet al. 27th European Drosophila Conference, Oct 2024, Lyon, France Poster de conférence hal-04783569v1
Contribution of variable TE content on phenotype and plasticity in Drosophila melanogaster Anaïs Larue,Miriam Merenciano,S. Janillon,Agnès Vallier,Marie Fabletet al. International congress of transposable elements, Apr 2024, Saint-Malo, France Poster de conférence hal-04788765v1
Contribution of TE to the phenotype and plasticity in Drosophila melanogaster Anaïs Larue,Miriam Merenciano,S. Janillon,Camille Mayeux,Marie Fabletet al. CNET (24th congrès national des éléments transposables), Jul 2023, Perpignan, France Poster de conférence hal-04790763v1
High-throughput genomics and transcriptomics to decipher host-symbiont molecular dialogue in the cereal weevil Sitophilus oryzae and Sodalis pierantonius endosymbiotic association Nicolas Parisot,Mariana Galvão Ferrarini,Clément Goubert,Carlos Vargas-Chávez,Agnès Vallieret al. 10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France Poster de conférence hal-03810657v1
Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system Mariana G. Ferrarini,Elisa Dell’aglio,Agnès Vallier,Severine Balmand,Carole Vincent-Monégatet al. 10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France Poster de conférence hal-04783698v1
Transposable element dynamics in the host-bacteria association of the cereal weevil Sitophilus oryzae Mariana G. Ferrarini,Clément Goubert,Nicolas Parisot,Carlos Vargas-Chávez,Agnès Vallieret al. Mobile DNA 2021, Jun 2021, Virtual, France Poster de conférence hal-04790867v1
Discovering the link between insect symbiosis and transposable elements. Théo Chancy,Caroline Blanc,Agnès Vallier,Mariana G. Ferrarini,Elisa Dell’aglioet al. Crossroads between transposons and gene regulation, May 2019, London, United Kingdom Poster de conférence hal-04790819v1
Transposable element dynamics in Sitophilus oryzae Clément Goubert,Mariana G. Ferrarini,Agnès Vallier,Nicolas Parisot,Matthieu Boulesteixet al. Auvergne Rhône-Alpes Regional Workshop on Microbiome, Nov 2019, Villeurbanne, France Poster de conférence hal-04785024v1
Transposable element dynamics and regulation in a major crop pest: Sitophilus oryzae. Caroline Blanc,Théo Chancy,Agnès Vallier,Severine Balmand,Clément Goubertet al. Congrès national sur les éléments transposables, Jul 2019, Lyon, France Poster de conférence hal-04790834v1
Evaluating the essentiality of the primary endosymbiont of the rice weevil Sitophilus oryzae through genome analysis Carlos Vargas-Chavez,Nicolas Parisot,C. Goubert,Patrice Baa-Puyoulet,Severine Balmandet al. 6. Meeting of the Spanish Society for Evolutionary Biology (SESBE), Jan 2018, Palma of Mallorca, Balearic Islands, Spain Poster de conférence hal-03514015v1
The draft genome sequence of the rice weevil Sitophilus oryzae as a model to explore the host-symbiont interactions in a nascent stage of endosymbiosis Carlos Vargas-Chavez,Nicolas Parisot,Clément Goubert,Patrice Baa-Puyoulet,Severine Balmandet al. Journées Ouvertes Biologie Informatique Mathématiques (JOBIM), Jun 2016, Lyon, France Poster de conférence hal-03506786v1

Chapitre d'ouvrage (3)

Epigenetics and genotypic variation Miriam Merenciano,Anaïs Larue,Cristian Groza,Cristina Vieira,Rita Rebolloet al. On Epigenetics and Evolution, Elsevier, pp.119-151, 2024, ⟨10.1016/B978-0-443-19051-3.00006-1⟩ Chapitre d'ouvrage hal-04632875v1
Epigénétique et Eléments Transposables Clémentine Vitte,Séverine Chambeyron,Cristina Vieira Epigénétique en écologie et évolution, pp.95-116, 2024, 978-1-78948-216-4 Chapitre d'ouvrage hal-04938854v1
Self and Nonself from a Genomic Perspective: Transposable Elements Marie Fablet,Judit Salces-Ortiz,Bianca Fraga Menezes,Marlène Roy,Cristina Vieira Evolutionary Biology: Self/Nonself Evolution, Species and Complex Traits Evolution, Methods and Concepts, 2 (5), Springer International Publishing, pp.111-128, 2017, ⟨10.1007/978-3-319-61569-1_6⟩ Chapitre d'ouvrage hal-03323222v1

Autre publication scientifique (1)

Y chromosome makes fruit flies die younger Gabriel Marais,Jean-François Lemaitre,Cristina Vieira 2020, pp.100105. ⟨10.24072/pci.evolbiol.100105⟩ Autre publication scientifique hal-02908713v1

Pré-publication, Document de travail (6)

Exploring the role of transposable elements to sex gap in longevity in Drosophila species Miriam Merenciano,Sonia Janillon,Camille Mermet-Bouvier,Nelly Burlet,Valentina Rodriguez-Radaet al. 2025 Pré-publication, Document de travail hal-04941501v1
Identification and quantification of transposable element transcripts using Long-Read RNA-seq in &lt;i&gt;Drosophila&lt;/i&gt; germline tissues Rita Rebollo,Pierre Gerenton,Eric Cumunel,Arnaud Mary,François Sabotet al. 2024 Pré-publication, Document de travail hal-04791876v1
Transposable elements as evolutionary driving force to host shift in cactophilic Drosophila species D. Oliveira,A. Larue,W. Nunes,F. Sabot,A. Bodelónet al. 2025 Pré-publication, Document de travail hal-05060068v1
Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system Mariana Galvão Ferrarini,Elisa Dell’aglio,Agnès Vallier,Séverine Balmand,Carole Vincent-Monégatet al. 2024 Pré-publication, Document de travail hal-04792685v1
The transposable element-rich genome of the cereal pest Sitophilus oryzae Nicolas Parisot,Carlos Vargas-Chavez,Clément Goubert,Patrice Baa-Puyoulet,Séverine Balmandet al. 2024 Pré-publication, Document de travail hal-04706472v1
Drosophila suzukii oxidative stress response involves Jheh gene cluster but not transposable elements Pierre Marin,Angelo Jacquet,Hélène Henri,Patricia Gibert,Cristina Vieira 2020 Pré-publication, Document de travail hal-03014540v1