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Cyril Pommier

Plant research data engineer.
8
Documents
Identifiants chercheurs

Présentation

Cyril Pommier is a bio-informatician with a multidisciplinary background in molecular biology and computer science. He worked four years on genomic databases and has been working since 2007 on plant data management in global data federations with a focus on crops phenomic. He builds bridges between plant experimentation in the field, molecular biology and computer science from information system development to data management frameworks. He is now in charge of data and federation in the URGI PlantBioinfoPF, an INRAE bioinformatic platform part of ELIXIR-fr. Cyril Pommier is also co leader of the Plant community of ELIXIR (https://elixir-europe.org/communities/plant-sciences), the European Infrastructure for life science and co leader the Information System of Phenom-EMPHASIS, the national infrastructure for plant phenotyping. He is leading the building of data repositories (https://doi.org/10.34133/2019/1671403), data portals (https://urgi.versailles.inrae.fr/faidare/) and co leads international plant data standards (MIAPPE https://www.miappe.org , BrAPI https://www.brapi.org).
Cyril Pommier is a bio-informatician with a multidisciplinary background in molecular biology and computer science. He worked four years on genomic databases and has been working since 2007 on plant data management in global data federations with a focus on crops phenomic. He builds bridges between plant experimentation in the field, molecular biology and computer science from information system development to data management frameworks. He is now in charge of data and federation in the URGI PlantBioinfoPF, an INRAE bioinformatic platform part of ELIXIR-fr. Cyril Pommier is also co leader of the Plant community of ELIXIR (https://elixir-europe.org/communities/plant-sciences), the European Infrastructure for life science and co leader the Information System of Phenom-EMPHASIS, the national infrastructure for plant phenotyping. He is leading the building of data repositories (https://doi.org/10.34133/2019/1671403), data portals (https://urgi.versailles.inrae.fr/faidare/) and co leads international plant data standards (MIAPPE https://www.miappe.org , BrAPI https://www.brapi.org).

Publications

38026

The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems

Elizabeth Arnaud , Marie-Angélique Laporte , Soonho Kim , Céline Aubert , Sabina Leonelli
Gene Expression Patterns, 2020, 1, pp.100105. ⟨10.1016/j.patter.2020.100105⟩
Article dans une revue hal-02949637v1
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Enabling reusability of plant phenomic datasets with MIAPPE 1.1

Evangelia Papoutsoglou , Daniel Faria , Daniel Arend , Elizabeth Arnaud , Ioannis Athanasiadis
New Phytologist, 2020, 227 (1), pp.260-273. ⟨10.1111/nph.16544⟩
Article dans une revue hal-02949641v1
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Applying FAIR principles to plant phenotypic data management in GnpIS

Cyril Pommier , Célia Michotey , Guillaume Cornut , Pierre Roumet , Eric Duchêne
Plant Phenomics, 2019, 2019, pp.1-15. ⟨10.34133/2019/1671403⟩
Article dans une revue hal-02624031v1
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BrAPI - an Application Programming Interface for Plant Breeding Applications.

Rafael Abbeloos , Jan Erik Backlund , Martin Basterrechea Salido , Guillaume Bauchet , Omar Benites-Alfaro
Bioinformatics, 2019, 35 (20), pp.4147-4155. ⟨10.1093/bioinformatics/btz190⟩
Article dans une revue hal-02626802v1
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Dealing with multi-source and multi-scale information in plant phenomics: the ontology-driven Phenotyping Hybrid Information System

Pascal Neveu , Anne Tireau , Nadine Hilgert , Vincent Negre , Jonathan Mineau-Cesari
New Phytologist, 2019, 221 (1), pp.588-601. ⟨10.1111/nph.15385⟩
Article dans une revue hal-02627721v1
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Measures for interoperability of phenotypic data: minimum information requirements and formatting

Thomas Altmann , Daniel Arend , Elizabeth Arnaud , Dijun Chen , Guillaume Cornut
Plant Methods, 2016, 12, pp.1-18. ⟨10.1186/s13007-016-0144-4⟩
Article dans une revue hal-02640958v1

Towards recommendations for metadata and data handling in plant phenotyping

Pawel Krajewski , Dijun Chen , Hanna Cwiek , Aalt D. J. van Dijk , Fabio Fiorani
Journal of Experimental Botany, 2015, 66 (18), pp.5417-5427. ⟨10.1093/jxb/erv271⟩
Article dans une revue hal-02636470v1
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FAIR data PLANT PHENO 2023

Cyril Pommier , Célia Michotey , Isabelle Alic
École thématique. FAIR data PLANT PHENO 2023, Paris, France. 2023
Cours hal-04459199v1