Damien Courtine Bio-informatician in a microbiology laboratory. I work mainly in fields of environmental genomics and host-parasite interactions

Publications

Article dans une revue (15)

A multi-omic resource for exploring microbial eukaryotes in the meromictic freshwater Lake Pavin Damien Courtine,Cécile Lepère,Ivan Wawrzyniak,Anne Moné,Hermine Billardet al. Scientific Data , In press, Metagenomics in marine and terrestrial aquatic environments, ⟨10.1038/s41597-026-06573-0⟩ Article dans une revue hal-05477144v1
Kineothrix sedimenti sp. nov., a 3-hydroxybutyrate-producing bacterium isolated from sediment of the meromictic Lake Pavin Corinne Biderre-Petit,Ayité Adama Hongleda,Gaëlle Marchal,Neha Mehta,Jean-Sébastien Guezet al. International Journal of Systematic and Evolutionary Microbiology, 2025, 75 (4), pp.006750. ⟨10.1099/ijsem.0.006750⟩ Article dans une revue hal-05046305v1
Comparison of methane yield of a novel strain of Methanothermobacter marburgensis in pure and mixed adapted culture derived from a methanation bubble column bioreactor Corinne Biderre-Petit,Mbarki Mariem,Damien Courtine,Benarab Yanis,Christophe Vialet al. Bioresource Technology, In press, 406, pp.131021. ⟨10.1016/j.biortech.2024.131021⟩ Article dans une revue hal-04621855v2
A pan‐genomic approach reveals novel Sulfurimonas clade in the ferruginous meromictic Lake Pavin Corinne Biderre-Petit,Damien Courtine,Claire Hennequin,Pierre Galand,Stefan Bertilssonet al. Molecular Ecology Resources, In press, ⟨10.1111/1755-0998.13923⟩ Article dans une revue hal-04381944v2
Functional diversity of microbial eukaryotes in a meromictic lake: Coupling between metatranscriptomic and a trait‐based approach Arthur Monjot,Gisèle Bronner,Damien Courtine,Corinne Cruaud,Corinne da Silvaet al. Environmental Microbiology, In press, ⟨10.1111/1462-2920.16531⟩ Article dans une revue hal-04273967v1
The Piezo-Hyperthermophilic Archaeon Thermococcus piezophilus Regulates Its Energy Efficiency System to Cope With Large Hydrostatic Pressure Variations Yann Moalic,Jordan Hartunians,Cécile Dalmasso,Damien Courtine,Myriam Georgeset al. Frontiers in Microbiology, 2021, 12, pp.730231. ⟨10.3389/fmicb.2021.730231⟩ Article dans une revue hal-03413270v1
H2-dependent formate production by hyperthermophilic Thermococcales: an alternative to sulfur reduction for reducing-equivalents disposal Sébastien Le Guellec,Elodie Leroy,Damien Courtine,Anne Godfroy,Erwan Roussel The International Society of Microbiologial Ecology Journal, 2021, ⟨10.1038/s41396-021-01020-x⟩ Article dans une revue hal-03263886v1
Thermococcus henrietii sp. nov., a novel extreme thermophilic and piezophilic sulfur-reducing archaeon isolated from a deep-sea hydrothermal chimney Karine Alain,Erwann Vince,Damien Courtine,Lois Maignien,Xiang Zenget al. International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (7), pp.004895. ⟨10.1099/ijsem.0.004895⟩ Article dans une revue hal-03322684v1
Thermococcus camini sp. nov., a hyperthermophilic and piezophilic archaeon isolated from a deep-sea hydrothermal vent at the Mid-Atlantic Ridge Damien Courtine,Erwann Vince,Loïs Maignien,Xavier Philippon,Nicolas Gayetet al. International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (7), ⟨10.1099/ijsem.0.004853⟩ Article dans une revue hal-03367146v1
Increased Pathogenicity of the Nematophagous Fungus Drechmeria coniospora Following Long-Term Laboratory Culture Damien Courtine,Xing Zhang,Jonathan Ewbank Frontiers in Fungal Biology, 2021, 2, ⟨10.3389/ffunb.2021.778882⟩ Article dans une revue hal-03926165v1
Antagonistic fungal enterotoxins intersect at multiple levels with host innate immune defences Xing Zhang,Benjamin Harding,Dina Aggad,Damien Courtine,Jia-Xuan Chenet al. PLoS Genetics, 2021, 17 (6), pp.e1009600. ⟨10.1371/journal.pgen.1009600⟩ Article dans une revue hal-03369945v1
Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods Damien Courtine,Jan Provaznik,Jérôme Reboul,Guillaume Blanc,Vladimir Beneset al. GigaScience, 2020, 9 (9), pp.1 - 11. ⟨10.1093/gigascience/giaa099⟩ Article dans une revue hal-02964511v1
Complete Genome Sequence of Hyperthermophilic Archaeon Thermococcus sp. EXT12c, Isolated from the East Pacific Rise 9°N Damien Courtine,Karine Alain,Myriam Georges,Nadège Bienvenu,Hilary Morrisonet al. Genome Announcements, 2017, 5 (50), ⟨10.1128/genomeA.01385-17⟩ Article dans une revue hal-05546764v1
&lt;em&gt;Thermococcus piezophilus&lt;/em&gt; sp. nov., a novel hyperthermophilic and piezophilic archaeon with a broad pressure range for growth, isolated from a deepest hydrothermal vent at the Mid-Cayman Rise Cécile Dalmasso,Philippe Oger,Gwendoline Selva,Damien Courtine,Stéphane L’haridonet al. Systematic and Applied Microbiology, 2016, 39 (7), pp.440-444. ⟨10.1016/j.syapm.2016.08.003⟩ Article dans une revue hal-02636723v1
Draft genome sequence of the intestinal parasite Blastocystis subtype 4-isolate WR1 Ivan Wawrzyniak,Damien Courtine,Marwan Osman,Christine Hubans-Pierlot,Amandine Cianet al. Genomics Data, 2015, 4, pp.22-23. ⟨10.1016/j.gdata.2015.01.009⟩ Article dans une revue hal-01247485v1

Communication dans un congrès (4)

Trait-based approach coupled to metatranscriptomic-derived sequence similarity network: towards the depiction of the functional diversity of freshwater microbial eukaryotes Arthur Monjot,Gisèle Bronner,Damien Courtine,Corinne Cruaud,Corinne Da Silvaet al. 16th International Congress of Protistology (ICOP/ISOP — 2025), Jun 2025, Seoul, South Korea Communication dans un congrès hal-05134808v1
Functional diversity of microbial eukaryotes in a meromictic lake: coupling between metatranscriptomic and a trait-based approach Arthur Monjot,Gisèle Bronner,Damien Courtine,Corinne Cruaud,Corinne Da Silvaet al. IX European Congress of Protistology & Annual Congress of the International Society of Protistologists, Jul 2023, Vienna, Austria Communication dans un congrès hal-04795139v1
Redefining the archaea Thermococcales order with the biogeographic repartition and comparative genomic analysis of more than 100 isolates. Violette Da Cunha,Philippe Oger,Damien Courtine,Loïs Maignien,Mohamed Jebbaret al. 2022 International Workshop on Deep-Sea Microbiology,, Mohamed Jebbar, Sep 2022, Plouzane, France Communication dans un congrès hal-04358652v1
Métabarcoding et étude de traits, vers une description de la diversité taxonomique et fonctionnelle des eucaryotes unicellulaires dans le lac Pavin Arthur Monjot,Gisèle Bronner,Damien Courtine,Corinne Cruaud,Corinne Da Silvaet al. Journées Thématiques de l'AFEM, Jun 2022, Clermont-Ferrand, France Communication dans un congrès hal-04795083v2

Poster de conférence (5)

Impact de la désoxygénation sur la répartition et la dynamique des microorganismes impliqués dans la production de gaz à effet de serre dans le lac d’Aydat Sarah Donnadieu,Léa Combes,Damien Courtine,Anne Mone,Maïlysia Scheeperset al. AFEM 2025 : 12ème colloque de l'Association Francophone d'Écologie Microbienne, Nov 2025, Beaune, France. Poster de conférence hal-05364931v1
Metapangenomic analysis of the metabolic pathway evolution within the Thermococcales Ryan Catchpole,Clémence Lauden,Damien Courtine,Evelyne Marguet,Stéphanie Fouteauet al. Pangenome 2026 One health, Dec 2025, Valencia (Espagne), Spain Poster de conférence hal-05504972v1
MetaPangenomic analysis within the Thermococcales Clémence Lauden,Ryan Catchepole,Phil M. Oger,Damien Courtine,Loïs Maignienet al. EMBO Workshop Molecular biology of Archaea (MBoA) 2024, Jun 2024, Palaiseau, France. 2024 Poster de conférence hal-04707270v1
Functional diversity of microbial eukaryotes in a meromictic lake: coupling between metatranscriptomic and a trait-based approach Arthur Monjot,Gisèle Bronner,Damien Courtine,Corinne Cruaud,Corinne Da Silvaet al. 26ème Journées de l’École Doctorale Sciences de la Vie, Santé, Agronomie, Environnement, Jun 2023, Clermont-Ferrand, France Poster de conférence hal-04795229v1
Draft genome sequence of the anaerobic intestinal parasite Blastocystis subtype 4 (ST4) Ivan Wawrzyniak,Damien Courtine,Céline Nourrisson,Philippe Poirier,Amandine Cianet al. Bioinformatique pour la Genomique Environnementale, May 2014, Lyon, France Poster de conférence hal-03572843v1

Thèse (1)

Comparative genomics of closely related Thermococcus isolates, a genus of hyperthermophilic Archaea Damien Courtine Genomics [q-bio.GN]. Université de Bretagne occidentale - Brest, 2017. English. ⟨NNT : 2017BRES0149⟩ Thèse tel-01900466v2