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Unveiling pelagic-benthic coupling associated with the biological carbon pump in the Fram Strait (Arctic Ocean)
Simon Ramondenc
,
Damien Eveillard
,
Katja Metfies
,
Morten H Iversen
,
Eva-Maria Nöthig
et al.
Article dans une revue
hal-04915956
v1
|
|
Community metabolic modeling of host-microbiota interactions through multi-objective optimization
Anna Lambert
,
Marko Budinich
,
Maxime Mahé
,
Damien Eveillard
,
Samuel Chaffron
Article dans une revue
hal-04674843
v1
|
|
Prokaryotic-virus-encoded auxiliary metabolic genes throughout the global oceans
Funing Tian
,
James M Wainaina
,
Cristina Howard-Varona
,
Guillermo Domínguez-Huerta
,
Benjamin Bolduc
et al.
Article dans une revue
hal-04683447
v1
|
|
Disentangling microbial networks across pelagic zones in the tropical and subtropical global ocean
Ina Deutschmann
,
Erwan Delage
,
Caterina Giner
,
Marta Sebastián
,
Julie Poulain
et al.
Article dans une revue
hal-04407573
v1
|
|
Datascape: exploring heterogeneous dataspace
Jakez Rolland
,
Ronan Boutin
,
Damien Eveillard
,
Benoit Delahaye
Article dans une revue
hal-04674835
v1
|
|
Ecological associations distribution modelling of marine plankton at a global scale
Marinna Gaudin
,
Damien Eveillard
,
Samuel Chaffron
Article dans une revue
hal-04674860
v1
|
|
Disentangling temporal associations in marine microbial networks
Ina Maria Deutschmann
,
Anders Krabberød
,
Francisco Latorre
,
Erwan Delage
,
Cèlia Marrasé
et al.
Article dans une revue
hal-03781901
v2
|
|
Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies
Hugo Doré
,
Ulysse Guyet
,
Jade Leconte
,
Gregory Farrant
,
Benjamin Alric
et al.
Article dans une revue
hal-04238382
v2
|
|
Ocean-wide comparisons of mesopelagic planktonic community structures
Janaina Rigonato
,
Marko Budinich
,
Alejandro Murillo
,
Manoela Brandão
,
Juan Pierella Karlusich
et al.
Article dans une revue
hal-04184772
v1
|
|
Unveiling abundance-dependent metabolic phenotypes of microbial communities
Natalia E Jiménez
,
Vicente Acuña
,
María Paz Cortés
,
Damien Eveillard
,
Alejandro Eduardo Maass
Article dans une revue
hal-04198586
v1
|
|
Microbial community functioning during plant litter decomposition
Simon Schroeter
,
Damien Eveillard
,
Samuel Chaffron
,
Johanna Zoppi
,
Bernd Kampe
et al.
Article dans une revue
hal-03781927
v1
|
|
Contribution of genome‐scale metabolic modelling to niche theory
Antoine Régimbeau
,
Marko Budinich
,
Abdelhalim Larhlimi
,
Juan José Pierella Karlusich
,
Olivier Aumont
et al.
Article dans une revue
hal-03635158
v1
|
|
Priorities for ocean microbiome research
Andre Abreu
,
Etienne Bourgois
,
Adam Gristwood
,
Romain Troublé
,
Silvia Acinas
et al.
Article dans une revue
hal-03781942
v1
|
|
Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems
Daniel Richter
,
Romain Watteaux
,
Thomas Vannier
,
Jade Leconte
,
Paul Frémont
et al.
Article dans une revue
hal-02399723
v2
|
|
Diversity and ecological footprint of Global Ocean RNA viruses
Guillermo Dominguez-Huerta
,
Ahmed Zayed
,
James Wainaina
,
Jiarong Guo
,
Funing Tian
et al.
Article dans une revue
hal-03781935
v1
|
|
Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean
Marta Royo-Llonch
,
Pablo Sánchez
,
Clara Ruiz-González
,
Guillem Salazar
,
Carlos Pedrós-Alió
et al.
Article dans une revue
hal-03781908
v1
|
|
A community perspective on the concept of marine holobionts: current status, challenges, and future directions
Simon M. Dittami
,
Enrique Arboleda
,
J.-C. Auguet
,
Arite Bigalke
,
Enora Briand
et al.
Article dans une revue
hal-03166872
v2
|
|
Environmental vulnerability of the global ocean epipelagic plankton community interactome
Samuel Chaffron
,
Erwan Delage
,
Marko Budinich
,
Damien Vintache
,
Nicolas Henry
et al.
Article dans une revue
hal-03443359
v2
|
|
Decline in plankton diversity and carbon flux with reduced sea ice extent along the Western Antarctic Peninsula
Yajuan Lin
,
Carly Moreno
,
Adrian Marchetti
,
Hugh Ducklow
,
Oscar Schofield
et al.
Article dans une revue
hal-03389081
v1
|
|
Investigating the microbial ecology of coastal hotspots of marine nitrogen fixation in the western North Atlantic
Seaver Wang
,
Weiyi Tang
,
Erwan Delage
,
Scott Gifford
,
Hannah Whitby
et al.
Article dans une revue
hal-03166895
v1
|
|
Tara Oceans: towards global ocean ecosystems biology
Shinichi Sunagawa
,
Silvia Acinas
,
Peer Bork
,
Chris Bowler
,
Silvia Acinas
et al.
Article dans une revue
hal-04394809
v1
|
|
Uncovering the Core Microbiome and Distribution of Palmerolide in Synoicum adareanum Across the Anvers Island Archipelago, Antarctica
Alison Murray
,
Nicole Avalon
,
Lucas Bishop
,
Karen Davenport
,
Erwan Delage
et al.
Article dans une revue
hal-02862365
v1
|
|
Probabilistic modeling to estimate jellyfish ecophysiological properties and size distributions
Simon Ramondenc
,
Damien Eveillard
,
Lionel Guidi
,
Fabien Lombard
,
Benoit Delahaye
Article dans une revue
hal-02539195
v1
|
|
Synergic Effects of Temperature and Irradiance on the Physiology of the Marine Synechococcus Strain WH7803
Ulysse Guyet
,
Ngoc Thanh Nguyen
,
Hugo Doré
,
Julie Haguait
,
Justine Pittera
et al.
Article dans une revue
hal-02929424
v1
|
|
Evolutionary Mechanisms of Long-Term Genome Diversification Associated With Niche Partitioning in Marine Picocyanobacteria
Hugo Doré
,
Gregory Farrant
,
Ulysse Guyet
,
Julie Haguait
,
Florian Humily
et al.
Article dans une revue
hal-02938656
v1
|
|
Roadmap for naming uncultivated Archaea and Bacteria
Alison Murray
,
John Freudenstein
,
Simonetta Gribaldo
,
Roland Hatzenpichler
,
Philip Hugenholtz
et al.
Article dans une revue
hal-02863761
v2
|
|
Linking Spatial and Temporal Dynamic of Bacterioplankton Communities With Ecological Strategies Across a Coastal Frontal Area
Clarisse Lemonnier
,
Morgan Perennou
,
Damien Eveillard
,
Antonio Fernandez-Guerra
,
Aude Leynaert
et al.
Article dans une revue
hal-03083042
v1
|
|
Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems
Luigi Caputi
,
Quentin Carradec
,
Damien Eveillard
,
Amos Kirilovsky
,
Eric Pelletier
et al.
Article dans une revue
hal-02999805
v1
|
|
Probabilistic Modeling of Microbial Metabolic Networks for Integrating Partial Quantitative Knowledge Within the Nitrogen Cycle
Damien Eveillard
,
Nicholas Bouskill
,
Damien Vintache
,
Julien Gras
,
Bess Ward
et al.
Article dans une revue
hal-01996045
v1
|
|
Observational Needs Supporting Marine Ecosystems Modeling and Forecasting: From the Global Ocean to Regional and Coastal Systems
Antonietta Capotondi
,
Michael Jacox
,
Chris Bowler
,
Maria Kavanaugh
,
Patrick Lehodey
et al.
Article dans une revue
hal-02316446
v1
|
|
Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience
Dinka Mandakovic
,
Claudia Rojas
,
Jonathan Maldonado
,
Mauricio Latorre
,
Dante Travisany
et al.
Article dans une revue
hal-01774624
v1
|
|
Identification of transcription factors involved in the phenotype of a domesticated oleaginous microalgae strain of Tisochrysis lutea
S. Thiriet-Rupert
,
Gregory Carrier
,
C. Trottier
,
Damien Eveillard
,
Benoît Schoefs
et al.
Article dans une revue
hal-01677336
v1
|
|
Modelling the complexity of plankton communities exploiting omics potential: From present challenges to an integrative pipeline
Domenico d'Alelio
,
Damien Eveillard
,
Victoria Coles
,
Luigi Caputi
,
Maurizio Ribera D’alcalà
et al.
Article dans une revue
hal-01909434
v1
|
|
Gene Expression Analysis of Zobellia galactanivorans during the Degradation of Algal Polysaccharides Reveals both Substrate-Specific and Shared Transcriptome-Wide Responses
François Thomas
,
Philippe Bordron
,
Damien Eveillard
,
Gurvan Michel
Article dans une revue
hal-01613034
v1
|
|
On the Power of Uncertainties in Microbial System Modeling: No Need To Hide Them Anymore
Benoît Delahaye
,
Damien Eveillard
,
Nicholas Bouskill
Article dans une revue
hal-01658218
v1
|
|
Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks
Julie Laniau
,
Clémence Frioux
,
Jacques Nicolas
,
Caroline Baroukh
,
Maria-Paz Cortés
et al.
Article dans une revue
hal-01635688
v1
|
|
A multi-objective constraint-based approach for modeling genome-scale microbial ecosystems.
Marko Budinich
,
Jérémie Bourdon
,
Abdelhalim Larhlimi
,
Damien Eveillard
Article dans une revue
hal-01478375
v1
|
|
Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks
Sylvain Prigent
,
Clémence Frioux
,
Simon M Dittami
,
Sven Thiele
,
Abdelhalim Larhlimi
et al.
Article dans une revue
hal-01449100
v1
|
|
Putative bacterial interactions from metagenomic knowledge with an integrative systems ecology approach
Philippe Bordron
,
Mauricio Latorre
,
Maria-Paz Cortés
,
Mauricio Gonzales
,
Sven Thiele
et al.
Article dans une revue
hal-01246173
v1
|
|
Deciphering transcriptional regulations coordinating the response to environmental changes
Vicente Acuña
,
Andrés Aravena
,
Carito Guziolowski
,
Damien Eveillard
,
Anne Siegel
et al.
Article dans une revue
hal-01260866
v1
|
|
Plankton networks driving carbon export in the oligotrophic ocean
Lionel Guidi
,
Samuel Chaffron
,
Lucie Bittner
,
Damien Eveillard
,
Abdelhalim Larhlimi
et al.
Article dans une revue
hal-01275276
v1
|
|
Un réseau social chez les planctons
Damien Eveillard
,
Joanna Jongwane
Interstices, 2016
Article dans une revue
hal-01350462
v1
|
|
Beyond the Black Queen Hypothesis.
Alix Mas
,
Shahrad Jamshidi
,
Yvan Lagadeuc
,
Damien Eveillard
,
Philippe Vandenkoornhuyse
Article dans une revue
hal-01290210
v1
|
|
Using hybrid automata modelling to study phenotypic plasticity and allocation strategies in the plant mycorrhizal mutualism
Shahrad Jamshidi
,
Jocelyn E. Behm
,
Damien Eveillard
,
E. Toby Kiers
,
Philippe Vandenkoornhuyse
Article dans une revue
hal-01157450
v1
|
|
Predictive ecology in a changing world
Nicolas Mouquet
,
Yvan Lagadeuc
,
Vincent Devictor
,
Luc Doyen
,
Anne Duputié
et al.
Article dans une revue
(article de synthèse)
hal-01180277
v1
|
|
A shift in the archaeal nitrifier community in response to natural and anthropogenic disturbances in the northern Gulf of Mexico
Silvia E. Newell
,
Damien Eveillard
,
Mark J. Mccarthy
,
Wayne S. Gardner
,
Zhanfei Liu
et al.
Environmental Microbiology Reports, 2014, 6 (1), pp.106 - 112
Article dans une revue
hal-00951509
v1
|
|
A metabolic approach to study algal-bacterial interactions in changing environments.
Simon M. Dittami
,
Damien Eveillard
,
Thierry Tonon
Article dans une revue
hal-00936195
v1
|
|
The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond.
Sylvain Prigent
,
Guillaume Collet
,
Simon M Dittami
,
Ludovic Delage
,
Floriane Ethis de Corny
et al.
Article dans une revue
hal-01057153
v1
|
|
Marine systems biology.
Thierry Tonon
,
Damien Eveillard
Frontiers in Genetics, 2014, 6, pp.181
Article dans une revue
hal-01161455
v1
|
|
Antagonistic interactions between heterotrophic bacteria as a potential regulator of community structure of hypersaline microbial mats.
Richard A Long
,
Damien Eveillard
,
Shelli L M Franco
,
Eric Reeves
,
James L Pinckney
Article dans une revue
hal-00752749
v1
|
|
Environmental factors determining ammonia-oxidizing organism distribution and diversity in marine environments.
Nicholas J Bouskill
,
Damien Eveillard
,
Diana Chien
,
Amal Jayakumar
,
Bess B Ward
Article dans une revue
istex
hal-00661746
v1
|
|
Using logic programming for modeling the one-carbon metabolism network to study the impact of folate deficiency on methylation processes.
Etienne Z Gnimpieba
,
Damien Eveillard
,
Jean-Louis Guéant
,
Abalo Chango
Article dans une revue
hal-00626712
v1
|
|
Toward systems biology in brown algae to explore acclimation and adaptation to the shore environment.
Thierry Tonon
,
Damien Eveillard
,
Sylvain Prigent
,
Jérémie Bourdon
,
Philippe Potin
et al.
Article dans une revue
hal-00661751
v1
|
|
Seasonal and annual reoccurrence in betaproteobacterial ammonia-oxidizing bacterial population structure.
Nicholas J Bouskill
,
Damien Eveillard
,
Gregory O'Mullan
,
George A Jackson
,
Bess B Ward
Article dans une revue
istex
hal-00626710
v1
|
|
Integrated analysis of the gene neighbouring impact on bacterial metabolic networks.
P. Bordron
,
D. Eveillard
,
I. Rusu
Article dans une revue
hal-00626709
v1
|
|
Integrating quantitative knowledge into a qualitative gene regulatory network.
Jérémie Bourdon
,
Damien Eveillard
,
Anne Siegel
Article dans une revue
hal-00626708
v1
|
|
Hybrid Modeling of Gene Regulatory Networks: Mixing Temporal and Qualitative Biological Properties
Jonathan Fromentin
,
Damien Eveillard
,
Olivier Roux
Article dans une revue
hal-00346588
v1
|
|
Targeting human Rad51 by specific DNA aptamers induces inhibition of homologous recombination
Sf Martinez
,
A. Renodon-Cornière
,
J. Nomme
,
D. Eveillard
,
F. Fleury
et al.
Biochimie, 2010, 92 (12), pp.1832-1838
Article dans une revue
hal-00549787
v1
|
|
Targeting human Rad51 by specific DNA aptamers induces inhibition of homologous recombination.
Susan F Martinez
,
Axelle Renodon-Cornière
,
Julian Nomme
,
Damien Eveillard
,
Fabrice Fleury
et al.
Article dans une revue
istex
hal-00626711
v1
|
|
Homogeneous decomposition of protein interaction networks: refining the description of intra-modular interactions
Géraldine del Mondo
,
Damien Eveillard
,
Irena Rusu
Article dans une revue
hal-02352007
v1
|
|
Temporal constraints of a gene regulatory network: refining a qualitative simulation
Jamil Ahmad
,
Jérémie Bourdon
,
Damien Eveillard
,
Jonathan Fromentin
,
Olivier Roux
et al.
Article dans une revue
istex
hal-00423353
v1
|
|
Homogeneous decomposition of protein interaction networks: refining the description of intra-modular interactions.
Géraldine del Mondo
,
Damien Eveillard
,
Irena Rusu
Article dans une revue
hal-00415905
v1
|
|
Time course gene expression in the one-carbon metabolism network using HepG2 cell line grown in folate-deficient medium.
Abalo Chango
,
Afif Abdel Nour
,
Souad Bousserouel
,
Damien Eveillard
,
Pauline M Anton
et al.
Article dans une revue
istex
hal-00415914
v1
|
|
Temporal constraints of a gene regulatory network: Refining a qualitative simulation.
Jamil Ahmad
,
Jérémie Bourdon
,
Damien Eveillard
,
Jonathan Fromentin
,
Olivier Roux
et al.
Article dans une revue
istex
hal-00415921
v1
|
|
Ammonia-oxidizing bacterial community composition in estuarine and oceanic environments assessed using a functional gene microarray
Bess B. Ward
,
Damien Eveillard
,
Julie D. Kirshtein
,
Joshua D. Nelson
,
Mary A. Voytek
et al.
Environmental Microbiology, 2007, 9 (10), pp.2522-2538
Article dans une revue
hal-00346599
v1
|
|
A multi-scale constraint programming model of alternative splicing regulation
Damien Eveillard
,
Delphine Ropers
,
Hidde de Jong
,
Christiane Branlant
,
Alexander Bockmayr
Article dans une revue
inria-00000916
v1
|