Danchin Etienne

111

Documents

Publications

	Building integrated plant health surveillance: a proactive research agenda for anticipating and mitigating disease and pest emergence S. Soubeyrand , Arnaud Estoup , Astrid Cruaud , Sylvie Malembic-Maher , Christine Meynard CABI Agriculture and Bioscience, 2024, 5, pp.72. ⟨10.1186/s43170-024-00273-8⟩ Journal articles hal-04672656v1
	Unzipped genome assemblies of polyploid root-knot nematodes reveal unusual and clade-specific telomeric repeats Ana Paula Zotta Mota , Georgios Koutsovoulos , Laetitia Perfus-Barbeoch , Evelin Despot-Slade , Karine Labadie Nature Communications, 2024, 15 (1), pp.773. ⟨10.1038/s41467-024-44914-y⟩ Journal articles hal-04489824v1
	Mate copying requires the coincidence detector Rutabaga in the mushroom bodies of Drosophila melanogaster Sabine Nöbel , Etienne Danchin , Guillaume Isabel iScience, 2023, 26 (9), pp.107682. ⟨10.1016/j.isci.2023.107682⟩ Journal articles hal-04718788v1
	Genome sequence and annotation of Periconia digitata a hopeful biocontrol agent of phytopathogenic oomycetes Elena Bovio , Corinne Rancurel , Aurélie Seassau , Marc Magliano , Marie Gislard Scientific Data , 2023, 10 (1), pp.583. ⟨10.1038/s41597-023-02440-4⟩ Journal articles hal-04198172v1
	MHC-II distance between parents predicts sex allocation decisions in a genetically monogamous bird Maxime Pineaux , Thomas Merkling , Etienne Danchin , Scott Hatch , Sarah Leclaire Behavioral Ecology, 2022, 33 (1), pp.245-251. ⟨10.1093/beheco/arab130⟩ Journal articles hal-03770671v1
	Improvement of eukaryotic protein predictions from soil metagenomes Carole Belliardo , Georgios D Koutsovoulos , Corinne Rancurel , Mathilde Clément , Justine Lipuma Scientific Data , 2022, 9 (1), pp.311. ⟨10.1038/s41597-022-01420-4⟩ Journal articles hal-03931195v1
	The importance of population heterogeneities in detecting social learning as the foundation of animal cultural transmission Sabine Noebel , Xiaobo Wang , Laurine Talvard , Juliette Tariel , Maëva Lille Proceedings of the Royal Society B: Biological Sciences, 2022, 289 (1977), pp.20220431. ⟨10.1098/rspb.2022.0431⟩ Journal articles hal-03794888v1
	AvP: A software package for automatic phylogenetic detection of candidate horizontal gene transfers Georgios D Koutsovoulos , Solène Granjeon Noriot , Marc Bailly-Bechet , Etienne G J Danchin , Corinne Rancurel PLoS Computational Biology, 2022, 18 (11), pp.e1010686. ⟨10.1371/journal.pcbi.1010686⟩ Journal articles hal-04080521v1
	Female fruit flies copy the acceptance, but not the rejection, of a mate Sabine Noebel , Magdalena Assael-Monier , Laura Fargeot , Guillaume Lespagnol , Etienne Danchin Behavioral Ecology, 2022, ⟨10.1093/beheco/arac071⟩ Journal articles hal-03818761v1
	A simple ATAC-seq protocol for population epigenetics Ronaldo de Carvalho Augusto , Olivier REY , Céline Cosseau , Cristian Chaparro , Jeremie Vidal-Dupiol Wellcome Open Research, 2021, 5, pp.121. ⟨10.12688/wellcomeopenres.15552.2⟩ Journal articles hal-03145575v2
	Movements of transposable elements contribute to the genomic plasticity and species diversification in an asexually reproducing nematode pest Djampa Kozlowski , Rahim Hassanaly-Goulamhoussen , Martine da Rocha , Georgios Koutsovoulos , Marc Bailly-Bechet Evolutionary Applications, 2021, 14 (7), pp.1844-1866. ⟨10.1111/eva.13246⟩ Journal articles hal-04617465v1
	Recent Advances in Population Genomics of Plant-Parasitic Nematodes Josselin Montarry , Benjamin Mimee , Etienne G J Danchin , Georgios D Koutsovoulos , Dave T Ste-Croix Phytopathology, 2021, 111 (1), pp.40-48. ⟨10.1094/phyto-09-20-0418-rvw⟩ Journal articles hal-03734053v1
	Genome Expression Dynamics Reveal the Parasitism Regulatory Landscape of the Root-Knot Nematode Meloidogyne incognita and a Promoter Motif Associated with Effector Genes Martine da Rocha , Caroline Bournaud , Julie Dazenière , Peter Thorpe , Marc Bailly-Bechet Genes, 2021, 12 (5), pp.771. ⟨10.3390/genes12050771⟩ Journal articles hal-04617459v1
	First evidence for a significant effect of the regression to the mean fallacy in mate copying: a comment on Davies et al Etienne Danchin , Sabine Noebel , Arnaud Pocheville , Guillaume Isabel Behavioral Ecology, 2020, vol.31 (n°6), pp.1292-1293. ⟨10.1093/beheco/araa076⟩ Journal articles hal-03156620v1
	Genome structure and content of the rice root‐knot nematode ( Meloidogyne graminicola ) Ngan Thi Phan , Julie Orjuela , Etienne Danchin , Christophe Klopp , Laetitia Perfus‐barbeoch Ecology and Evolution, 2020, 10 (20), pp.11006-11021. ⟨10.1002/ece3.6680⟩ Journal articles hal-02988764v1
	Genome assembly and annotation of Meloidogyne enterolobii, an emerging parthenogenetic root- knot nematode Georgios Koutsovoulos , Marine Poullet , Abdelnaser Elashry , Erika Sallet , Martine da Rocha Scientific Data , 2020, 7 (1), pp.324. ⟨10.1038/s41597-020-00666-0⟩ Journal articles hal-02972492v1
	Evolutionarily conserved plant genes responsive to root-knot nematodes identified by comparative genomics Ana Paula Zotta Mota , Diana Fernandez , Fabricio Arraes , Anne-Sophie Petitot , Bruno Paes de Melo Molecular Genetics and Genomics, 2020, 295 (4), pp.1063-1078. ⟨10.1007/s00438-020-01677-7⟩ Journal articles hal-02991731v1
	Cross-Kingdom analysis of diversity, evolutionary history, and site selection within the eukaryotic macrophage migration inhibitory factor superfamily Claire Michelet , Etienne Danchin , Maëlle Jaouannet , Jürgen Bernhagen , Ralph Panstruga Genes, 2019, 10 (10), pp.740. ⟨10.3390/genes10100740⟩ Journal articles hal-02361285v1
	Epigenetically facilitated mutational assimilation: epigenetics as a hub within the inclusive evolutionary synthesis Etienne Danchin , Arnaud Pocheville , Olivier REY , Benoit Pujol , Simon Blanchet Biological Reviews, 2019, 94 (1), pp.259-282. ⟨10.1111/brv.12453⟩ Journal articles hal-03007472v1
	Epigenetics and insect polyphenism: mechanisms and climate change impacts Gautier Richard , Gaël Le Trionnaire , Etienne Danchin , Arnaud Sentis Current Opinion in Insect Science, 2019, 35, pp.138-145. ⟨10.1016/j.cois.2019.06.013⟩ Journal articles hal-02457199v1
	Contrasting effects of wild arachis dehydrin under abiotic and biotic stresses Ana Paula Zotta Mota , Thais Nicolini Oliveira , Christina Cleo Vinson , Thomas Christopher Rhys Williams , Marcos Mota Do Carmo Costa Frontiers in Plant Science, 2019, 10, pp.1-16. ⟨10.3389/fpls.2019.00497⟩ Journal articles hal-02622455v1
	Response to Comment on “Cultural flies: Conformist social learning in fruitflies predicts long-lasting mate-choice traditions” Arnaud Pocheville , Sabine Nöbel , Guillaume Isabel , Etienne Danchin Science, 2019, 366 (6462), pp.eaaw9549. ⟨10.1126/science.aaw9549⟩ Journal articles hal-03091131v1
	Population genomics supports clonal reproduction and multiple independent gains and losses of parasitic abilities in the most devastating nematode pest Georgios Koutsovoulos , Eder Marques , Marie Jeanne Arguel , Laurent Duret , Andressa C. Z. Machado Evolutionary Applications, 2019, 13, pp.1-16. ⟨10.1111/eva.12881⟩ Journal articles hal-02444457v1
	Signatures of the evolution of Parthenogenesis and Cryptobiosis in the Genomes of Panagrolaimid Nematodes Philipp H. Schiffer , Etienne Danchin , Ann M. Burnell , Christopher J. Creevey , Simon Wong iScience, 2019, 21, pp.587-602. ⟨10.1016/j.isci.2019.10.039⟩ Journal articles hal-02444450v1
	Gene copy number variations as signatures of adaptive evolution in the parthenogenetic, plant-parasitic nematode Meloidogyne incognita Philippe Castagnone-Sereno , Karine Mulet , Etienne Danchin , Georgios D. Koutsovoulos , Mégane Karaulic Molecular Ecology, 2019, 28 (10), pp.2559-2572. ⟨10.1111/mec.15095⟩ Journal articles hal-02629335v1
	Dopamine and serotonin are both required for mate-copying in Drosophila melanogaster Magdalena Monier , Regina Nobre , Etienne Danchin , Guillaume Isabel Frontiers in Behavioral Neuroscience, 2019, 12, ⟨10.3389/fnbeh.2018.00334⟩ Journal articles hal-02538261v1
	Teratosphaeria stem canker disease on Eucalypt in Italy Salvatore Vitale , Laura Luongo , Etienne Danchin , Giovanni Mughini , Maria Gras European Journal of Plant Pathology, 2019, 153, pp.503-515. ⟨10.1007/s10658-018-1577-6⟩ Journal articles hal-02620419v1
	A Chemosensory GPCR as a Potential Target to Control the Root-Knot Nematode Meloidogyne incognita Parasitism in Plants Emmanuel Bresso , Diana Fernandez , Deisy X Amora , Philippe Noel , Anne-Sophie Petitot Molecules, 2019, 24 (20), pp.3798. ⟨10.3390/molecules24203798⟩ Journal articles hal-02324816v1
	Functional diversification of horizontally acquired glycoside hydrolase family 45 (GH45) proteins in phytophaga beetles Andre Busch , Etienne Danchin , Yannick Pauchet BMC Evolutionary Biology, 2019, 19, pp.1-14. ⟨10.1186/s12862-019-1429-9⟩ Journal articles hal-02620256v1
	Comparative root transcriptome of wild Arachis reveals NBS-LRR genes related to nematode resistance Ana Paula Zotta Mota , Bruna Vidigal , Etienne G.J Danchin , Roberto Coiti Togawa , Soraya C.M. Leal-Bertioli BMC Plant Biology, 2018, 18, pp.2-16. ⟨10.1186/s12870-018-1373-7⟩ Journal articles hal-02622222v1
	Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexually reproducing species Loris Pratx , Corinne Rancurel , Martine da Rocha , Etienne Danchin , Philippe Castagnone-Sereno BMC Genomics, 2018, 19, pp.1-21. ⟨10.1186/s12864-018-4686-x⟩ Journal articles hal-02626482v1
	Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes Romain Blanc-Mathieu , Laetitia Zurletto , Jean-Marc Aury , Martine da Rocha , Jerome Gouzy PLoS Genetics, 2017, 13 (6), pp.e1006777. ⟨10.1371/journal.pgen.1006777⟩ Journal articles hal-01602779v1
	The transcriptomes of Xiphinema index and Longidorus elongatus Suggest Independent acquisition of some plant parasitism genes by horizontal gene transfer in early-branching nematodes Etienne G J. Danchin , Laetitia Perfus-Barbeoch , Corinne Rancurel , Peter Thorpe , Martine da Rocha Genes, 2017, 8 (10), ⟨10.3390/genes8100287⟩ Journal articles hal-02624204v1
	Genome-wide analysis of expansin superfamily in wild Arachis discloses a stress-responsive expansin-like B gene. Larissa Arrais Guimaraes , Ana Paula Zotta Mota , Ana Claudia Guerra Araujo , Lucio Flavio de Alencar Figueiredo , Bruna Medeiros Pereira Plant Molecular Biology, 2017, ⟨10.1007/s11103-017-0594-8⟩ Journal articles hal-01605017v1
	Alienness: rapid detection of candidate horizontal gene transfers across the tree of life Corinne Rancurel , Ludovic Legrand , Etienne Danchin Genes, 2017, 8 (10), pp.248. ⟨10.3390/genes8100248⟩ Journal articles hal-01609604v1
	Nod Factor Effects on Root Hair-Specific Transcriptome of Medicago truncatula: Focus on Plasma Membrane Transport Systems and Reactive Oxygen Species Networks. Isabelle Damiani , Alice Drain , Marjorie Guichard , Sandrine Balzergue , Alexandre Boscari Frontiers in Plant Science, 2016, 7, pp.794. ⟨10.3389/fpls.2016.00794⟩ Journal articles hal-01354648v1
	Lateral gene transfer in eukaryotes: tip of the iceberg or of the ice cube? Etienne G. J. Danchin BMC Biology, 2016, 14 (1), ⟨10.1186/s12915-016-0330-x⟩ Journal articles hal-01401096v1
	The transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes S Eves-van den Akker , C.J. Lilley , Etienne Danchin , Corinne Rancurel , P.J.A. Cock Journal of Nematology, 2016, 48 (4), pp.317-317 Journal articles hal-01495400v1
	Horizontal gene transfer of pectinases from bacteria preceded the diversification of stick and leaf insects Matan Shelomi , Etienne Danchin , David Heckel , Benjamin Wipfler , Sven Bradler Scientific Reports, 2016, 6, ⟨10.1038/srep26388⟩ Journal articles hal-01324361v1
	The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence Sebastian Eves-van Den Akker , Dominik R. Laetsch , Peter Thorpe , Catherine J. Lilley , Etienne G. J. Danchin Genome Biology, 2016, 17 (1), pp.1-23. ⟨10.1186/s13059-016-0985-1⟩ Journal articles hal-01439090v1
	Prospects of herbivore egg-killing plant defenses for sustainable crop protection Nina E. Fatouros , Antonino Cusumano , Etienne G.J. Danchin , Stefano Colazza Ecology and Evolution, 2016, 6 (19), pp.1-13. ⟨10.1002/ece3.2365⟩ Journal articles hal-01413544v1
	Horizontal gene transfer from bacteria has enabled the plant-parasitic nematode [i]Globodera pallida[/i] to feed on host-derived sucrose Etienne G.J. Danchin , Elena A. Guzeeva , Sophie Mantelin , Adokiye Berepiki , John T. Jones Molecular Biology and Evolution, 2016, on-line, ⟨10.1093/molbev/msw041⟩ Journal articles hal-01293531v1
	Parasitic success without sex – the nematode experience Philippe Castagnone-Sereno , Etienne Danchin Journal of Evolutionary Biology, 2014, 27 (7), pp.1323-33. ⟨10.1111/jeb.12337⟩ Journal articles hal-02640000v1
	Genomic and transcriptomic analysis of Laccaria bicolor CAZome reveals insights into polysaccharides remodelling during symbiosis establishment Claire Veneault-Fourrey , Carine Commun , Annegret Kohler , Emmanuelle Morin , Raffaella Balestrini Fungal Genetics and Biology, 2014, 72, pp.168-181. ⟨10.1016/j.fgb.2014.08.007⟩ Journal articles hal-01123254v1
	The transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes S Eves-van den Akker , C.J. Lilley , Etienne Danchin , Corinne Rancurel , P.J.A. Cock Genome Biology and Evolution, 2014, 6 (9), pp.2181-2194. ⟨10.1093/gbe/evu171⟩ Journal articles hal-02638653v1
	Root-knot nematodes pan-genomics reveals novel target genes for safer and more specific control Etienne Danchin , Marie Jeanne Arguel , Amandine Fournier , Laetitia Perfus-Barbeoch , Marc Magliano Journal of Nematology, 2014, 46 (2), pp.150 Journal articles hal-01269022v1
	Top 10 plant-parasitic nematodes in molecular plant pathology John T. Jones , Annelies Haegeman , Etienne Danchin , Hari S. Gaur , Johannes Helder Molecular Plant Pathology, 2013, 14 (6), 16 p. ⟨10.1111/mpp.12057⟩ Journal articles hal-02651616v1
	Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga Jean-François Flot , Boris Hespeels , Xiang Li , Benjamin Noel , Irina Arkhipova Nature, 2013, 500 (7463), pp.453-457. ⟨10.1038/nature12326⟩ Journal articles hal-01282538v1
	Diversity and evolution of root-knot nematodes, genus Meloidogyne Philippe Castagnone-Sereno , Etienne Danchin , Laetitia Perfus-Barbeoch , Pierre Abad Annual Review of Phytopathology, 2013, 51, pp.1-18. ⟨10.1146/annurev-phyto-082712-102300⟩ Journal articles hal-02650089v1
	Identification of novel target genes for safer and more specific control of root-knot nematodes from a pan-genome mining Etienne Danchin , Marie Jeanne Arguel , Amandine Fournier , Laetitia Zurletto , Marc Magliano PLoS Pathogens, 2013, 9 (10), pp.1-15. ⟨10.1371/journal.ppat.1003745⟩ Journal articles hal-01137164v1
	Signatures of adaptation to plant parasitism in nematode genomes David Mck. Bird , John T. Jones , Charles H. Opperman , Taisei Kikuchi , Etienne Danchin Parasitology, 2013, 142, pp.1-14. ⟨10.1017/S0031182013002163⟩ Journal articles hal-01137177v1
	A root-knot nematode-secreted protein is injected into giant cells and targeted to the nuclei Maëlle Jaouannet , Laetitia Perfus-Barbeoch , Emeline Deleury , Marc Magliano , Gilbert Engler New Phytologist, 2012, 194 (4), pp.924 - 931. ⟨10.1111/j.1469-8137.2012.04164.x⟩ Journal articles hal-02648827v1
	Lateral gene transfers have polished animal genomes: lessons from nematodes Etienne Danchin , Marie-Noelle Rosso Frontiers in Cellular and Infection Microbiology, 2012, 2 (27), pp.1-5. ⟨10.3389/fcimb.2012.00027⟩ Journal articles hal-01267787v1
	Single pH buffer refolding screen for protein from inclusion bodies Bruno Coutard , Etienne Danchin , Rachid Oubelaid , Bruno Canard , Christophe Bignon Protein Expression and Purification, 2012, 82 (2), pp.352-359. ⟨10.1016/j.pep.2012.01.014⟩ Journal articles hal-02649344v1
	Contribution of lateral gene transfers to the genome composition and parasitic ability of root-knot nematodes. Julien Paganini , Amandine Campan-Fournier , Martine da Rocha , Philippe Gouret , Pierre Pontarotti PLoS ONE, 2012, 7 (11), pp.e50875. ⟨10.1371/journal.pone.0050875⟩ Journal articles hal-00831026v1
	Eukaryote to gut bacteria transfer of a glycoside hydrolase gene essential for starch breakdown in plants. Maria Cecilia Arias , Etienne G J Danchin , Pedro Coutinho , Bernard Henrissat , Steven Ball Mobile Genetic Elements, 2012, 2 (2), pp.81-87. ⟨10.4161/mge.20375⟩ Journal articles hal-00862309v1
	Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea Joelle J. Amselem , Christina A. Cuomo , Jan A. L. van Kan , Muriel Viaud , Ernesto P. Benito PLoS Genetics, 2011, 7 (8), ⟨10.1371/journal.pgen.1002230⟩ Journal articles hal-01190236v1
	The plant apoplasm is an important recipient compartment for nematode secreted proteins Paulo Vieira , Etienne Danchin , Cédric Neveu , Carine Crozat , Stéphanie Jaubert Journal of Experimental Botany, 2011, 62 (3), pp.1241-1253. ⟨10.1093/jxb/erq352⟩ Journal articles hal-02644552v1
	What nematode genomes tell us about the importance of horizontal gene transfers in the evolutionary history of animals Etienne Danchin Mobile Genetic Elements, 2011, 1 (4), pp.1-5 Journal articles hal-02641806v1
	Horizontal gene transfer in nematodes: a catalyst for plant parasitism Annelies Haegeman , John T. Jones , Etienne Danchin Molecular Plant-Microbe Interactions, 2011, 24 (8), pp.879-887. ⟨10.1094/MPMI-03-11-0055⟩ Journal articles hal-02652678v1
	Identifying discriminative classification-based motifs in biological sequences Celine Vens , Marie-Noelle Rosso , Etienne Danchin Bioinformatics, 2011, 27 (9), pp.1231-1238. ⟨10.1093/bioinformatics/btr110⟩ Journal articles hal-02652585v1
	Identification of plant-parasitism genes in nematodes in silico screening and in vivo validation in Meloidogyne incognita. Mj. Arguel , Amandine Fournier , L. Perfus-Barbeoch , Eg. Danchin , Mn. Rosso Communications in Agricultural and Applied Biological Sciences, 2011, 76 (3), pp.409-412 Journal articles hal-02303156v1
	Data-mining of the Meloidogyne incognita degradome and comparative analysis of proteases in nematodes Philippe Castagnone-Sereno , Emeline Deleury , Etienne Danchin , Laetitia Perfus-Barbeoch , Pierre Abad Genomics, 2011, 97 (1), pp.29-36. ⟨10.1016/j.ygeno.2010.10.002⟩ Journal articles hal-02644216v1
	An Arabidopsis (malectin-like) leucine-rich repeat receptor-like kinase contributes to downy mildew disease Sophie Hok , Etienne Danchin , Valerie Allasia , Franck Panabières , Agnès Attard Plant, Cell and Environment, 2011, 34 (11), pp.1944-1957. ⟨10.1111/j.1365-3040.2011.02390.x⟩ Journal articles hal-02650905v1
	Genome-wide survey and analysis of microsatellites in nematodes, with a focus on the plant-parasitic species Meloidogyne incognita Philippe Castagnone-Sereno , Etienne Danchin , Emeline Deleury , Thomas Guillemaud , Thibaut Malausa BMC Genomics, 2010, 11, pp.598. ⟨10.1186/1471-2164-11-598⟩ Journal articles hal-02663550v1
	Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium Li-Jun Ma , Charlotte van Der Does , Katherine A. Borkovich , Jeffrey J. Coleman , Marie-José Daboussi Nature, 2010, 464 (7287), pp.367-373. ⟨10.1038/nature08850⟩ Journal articles hal-02662964v1
	Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes Etienne Danchin , Marie-Noelle Rosso , Paulo Vieira , Janice de Almeida-Engler , Pedro M Coutinho Proceedings of the National Academy of Sciences of the United States of America, 2010, 107 (41), pp.17651-17656 Journal articles hal-02669078v1
	A Medicago truncatula NADPH oxidase is involved in symbiotic nodule functioning Daniel Marino , Emilie Andrio , Etienne Danchin , Elodie Oger , Sebastien Gucciardo New Phytologist, 2010, 189 (2), pp.580-592. ⟨10.1111/j.1469-8137.2010.03509.x⟩ Journal articles hal-02665315v1
	The genomes of root-knot nematodes David Mck Bird , Valerie M. Williamson , Pierre Abad , James Mccarter , Etienne Danchin Annual Review of Phytopathology, 2009, 47, pp.333-351. ⟨10.1146/annurev-phyto-080508-081839⟩ Journal articles hal-02662834v1
	The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion Jeffrey J. Coleman , Steve D. Rounsley , Marianela Rodriguez-Carres , Alan Kuo , Catherine C. Wasmann PLoS Genetics, 2009, 5 (8), pp.e1000618 Journal articles hal-02664932v1
	CASSIOPE: an expert system for conserved regions searches Virginie Lopez Rascol , Anthony Levasseur , Olivier Chabrol , Simona Grusea , Philippe Gouret BMC Bioinformatics, 2009, 10, pp.284 Journal articles hal-02661323v1
	The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis F. Martin , A. Aerts , D. Ahrén , A. Brun , E. G. J. Danchin Nature, 2008, 452 (7183), pp.88-93. ⟨10.1038/nature06556⟩ Journal articles halsde-00261893v1
	The genome sequence of the model ascomycete fungus Podospora anserina. Eric Espagne , Olivier Lespinet , Fabienne Malagnac , Corinne da Silva , Olivier Jaillon Genome Biology, 2008, 9 (5), pp.R77. ⟨10.1186/gb-2008-9-5-r77⟩ Journal articles hal-00286300v1
	Evolution of major histocompatibility complex by "en bloc" duplication before mammalian radiation Elodie Darbo , Etienne Danchin , Michael Mcdermott , Pierre Pontarotti Immunogenetics, 2008, 60 (8), pp.423-438. ⟨10.1007/s00251-008-0301-7⟩ Journal articles hal-02664403v1
	Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina) Diego Martínez , Randy Berka , Bernard Henrissat , Markku Saloheimo , Mikko Arvas Nature Biotechnology, 2008, 26, pp.553-560. ⟨10.1038/nbt1403⟩ Journal articles hal-02669177v1
	Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita Pierre Abad , Jerome Gouzy , Jean-Marc Aury , Philippe Castagnone-Sereno , Etienne Danchin Nature Biotechnology, 2008, 26 (8), pp.909-915. ⟨10.1038/nbt.1482⟩ Journal articles hal-01189285v1
	Where do animal alpha-amylases come from Jean-Luc da Lage , Etienne Danchin , Didier Casane FEBS Letters, 2007, 581 (21), pp.3927-3935. ⟨10.1016/j.febslet.2007.07.019⟩ Journal articles hal-02663351v1
	The use of evolutionary biology concepts for genome annotation Etienne Danchin , Anthony Levasseur , Virginie Lopez Rascol , Philippe Gouret , Pierre Pontarotti Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 2007, 308B (1), pp.26-36. ⟨10.1002/jez.b.21131⟩ Journal articles hal-02658043v1
	Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88 Herman Pel , Johannes de Winde , David Archer , Paul Dyer , Gerald Hofmann Nature Biotechnology, 2007, 25 (2), pp.221-231. ⟨10.1038/nbt1282⟩ Journal articles hal-02668442v1
	Biotechnological applications and potential of fungal feruloyl esterases based on prevalence, classification and biochemical diversity Isabelle Benoit , Etienne Danchin , Robert-Jan Bleichrodt , Ronald de Vries Biotechnology Letters, 2007, 30 (3), pp.387-396. ⟨10.1007/s10529-007-9564-6⟩ Journal articles hal-02656772v1
	Conceptual bases for quantifying the role of the environment on gene evolution: the participation of positive selection and neutral evolution Anthony Levasseur , Ludovic Orlando , Xavier Bailly , Michel C. Milinkovitch , Etienne Danchin Biological Reviews, 2007, 82 (4), pp.551-572. ⟨10.1111/j.1469-185X.2007.00024.x⟩ Journal articles hal-02668139v1
	Where do animal alpha-amylases come from? An interkingdom trip. J.-L. da Lage , E.G.J. Danchin , D. Casane FEBS Letters, 2007, 581, pp.3927-3935 Journal articles hal-00161062v1
	Dividing the large glycoside hydrolase family 13 into subfamilies: towards improved functional annotations of alpha-amylase-related proteins Mark R. Stam , Etienne Danchin , Corinne Rancurel , Pedro M Coutinho , Bernard Henrissat Protein Engineering, Design and Selection, 2006, 19 (12), pp.555-562. ⟨10.1093/protein/gzl044⟩ Journal articles hal-02668771v1
	Des champignons qui carburent: de l'étude du génome à la production industrielle Marcel M. Asther , Eric Record , Isabelle Gimbert , Jean-Claude Sigoillot , Anthony Levasseur Biofutur, 2006, 269, pp.28-32 Journal articles hal-02664475v1
	Eleven ancestral gene families lost in mammals and vertebrates while otherwise universally conserved in animals Etienne Danchin , Philippe Gouret , Pierre Pontarotti BMC Evolutionary Biology, 2006, 6 (5), 10 p. ⟨10.1186/1471-2148-6-5⟩ Journal articles hal-02668451v1
	A rigorous method for multigenic families' functional annotation: the peptidyl arginine deiminase (PADs) proteins family example. Nathalie Balandraud , Philippe Gouret , Etienne G. J. Danchin , M Blanc , D Zinn BMC Genomics, 2005, 6, pp.153. ⟨10.1186/1471-2164-6-153⟩ Journal articles inserm-00091307v1
	FIGENIX: intelligent automation of genomic annotation: expertise integration in a new software platform Philippe Gouret , Vérane Vitiello , Nathalie Balandraud , André Gilles , Pierre Pontarotti BMC Bioinformatics, 2005, 6, 21 p. ⟨10.1186/1471-2105-6-198⟩ Journal articles hal-02681213v1
	The major histocompatibility complex origin Etienne Danchin , Vérane Vitiello , Alexandre Vienne , Olivier Richard , Philippe Gouret Immunological Reviews, 2004, 198, pp.216-232 Journal articles hal-02682552v1
	Towards the reconstruction of the bilaterian ancestral pre-MHC region Etienne Danchin , Pierre Pontarotti Trends in Genetics, 2004, 20 (12), pp.587-591. ⟨10.1016/j.tig.2004.09.009⟩ Journal articles hal-02677408v1
	High similarity between flanking regions of different microsatellites detected within each of two species of Lepidoptera Emese Meglécz , Frederic Petenian , Etienne Danchin , Armelle Coeur d'Acier , Jean-Yves Rasplus Molecular Ecology, 2004, 13 (6), pp.1693-1700. ⟨10.1111/j.1365-294X.2004.02163.x⟩ Journal articles hal-02678374v1
	Statistical evidence for a more than 800-million-year-old evolutionarily conserved genomic region in our genome Etienne Danchin , Pierre Pontarotti Journal of Molecular Evolution, 2004, 59 (5), pp.587-597. ⟨10.1007/s00239-004-2648-1⟩ Journal articles hal-02677409v1
	Evolution of the proto-MHC ancestral region Alexandre Vienne , Takashi Shiina , Laurent Abi-Rached , Etienne Danchin , Vérane Vitiello Immunogenetics, 2003, 55 (7), pp.429-436. ⟨10.1007/s00251-003-0601-x⟩ Journal articles hal-02683166v1
	Conservation of the MHC-like region throughout evolution Etienne Danchin , Laurent Abi-Rached , André Gilles , Pierre Pontarotti Immunogenetics, 2003, 55 (3), pp.141-148. ⟨10.1007/s00251-003-0562-0⟩ Journal articles hal-02681710v1

	The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals in-sights into the bases of parasitism and virulence S. Eves-van den Akker , D. R. Laetsch , P. Thorpe , C. J. Lilley , Etienne Danchin Joint Meeting of the Society of Nematologists and the Organization of Nematologists of Tropical America (ONTA), 2016, Jul 2016, Montréal, Canada. 387 p Conference papers hal-01604220v1
	Comparative genomics/transcriptomics to study effector gene birth in plant-parasitic nematodes S. Eves-van den Akker , C. J. Lilley , Etienne Danchin , Corinne Rancurel , P. J. A. Cock Society of Nematologists Annual Meeting 2014, Society of Nematologists. Marceline, Missouri, USA., 2015, Marceline, United States. 1 p Conference papers hal-02741588v1
	Investigating the acetylcholine receptor diversity and specificity in parasitic nematodes Cédric Neveu , Elise Courtot , Robin N. Beech , Abdallah Harmache , Jacques J. Cortet NemaTours : Bringing worms together, Le Studium - Loire Valley Institute for Advanced Studies. FRA., Jul 2014, Tours, France Conference papers hal-02741506v1
	Les récepteurs nicotiniques des nématodes parasites : cibles pharmacologiques pour le developpement de nouveaux anthelminthiques Elise Courtot , Claude Charvet , Nicolas Peineau , Etienne Danchin , Philippe Castagnone-Sereno Journées d'Animation Scientifique du Département Santé Animale, Institut National de Recherche Agronomique (INRA). UAR Département Santé Animale (0564)., Oct 2013, Cap d'Agde, France. 104 p Conference papers hal-02748100v1

	Orphan genes: Their identification and evolution in plant-parasitic nematodes Ercan Seçkin , Dominique Colinet , Marc Bailly-Bechet , Edoardo Sarti , Etienne Danchin JOBIM 2024 - Journées ouvertes en biologie, informatique, et mathématiques 2024, Jun 2024, Toulouse, France Conference poster hal-04615706v2
	High-quality genome assembly to identify structural variations in a new quarantine plant parasitic nematode Meloidogyne enterolobii Marine Poullet , Hemanth Gopal , Corinne Rancurel , Marine Sallaberry , Celine Lopez-Roques SMBE23, Jul 2023, Ferrara, Italy. Conference poster hal-04714985v1
	Isolation of candidates effectors secreted by the fungal pathogen Fusarium graminearum in the early stages of FHB disease on wheat. Philippe Lecomte , Christelle El Hajj Assaf , Martine da Rocha , Cherif Chetouhi , Olivier Soudière Effectome Network, Sep 2013, Lauret, France. 2013 Conference poster hal-02750292v1
	Identification of effectors secreted by the fungal pathogen Fusarium graminearum, main causal agent of FHB on wheat Philippe Lecomte , Christelle El Hajj Assaf , Martine da Rocha , Cherif Chetouhi , Etienne Danchin Plant Resistance Sustainability 2012 International Conference, Oct 2012, la colle sur loup, France. , 2012, International Conference on Plant Resistance Sustainability 2012 Conference poster hal-02749942v1

	Genomic perspectives on the long-term absence of sexual reproduction in animals Etienne Danchin , Jean-François Flot , Laetitia Perfus-Barbeoch , Karine van Doninck Evolutionary biology – Concepts, biodiversity, macroevolution and genome evolution, Springer-Verlag, 345 p., 2011, 978-3-642-20762-4. ⟨10.1007/978-3-642-20763-1_13⟩ Book sections hal-02809907v1
	The Genome Sequence of Meloidogyne incognita Unveils Mechanisms of Adaptation to Plant-Parasitism in Metazoa Etienne Danchin , Laetitia Perfus-Barbeoch Evolutionary Biology, Concept, Modeling, and Application, Editions Springer, pp.287-302, 2009, 978-3-642-00951-8. ⟨10.1007/978-3-642-00952-5_17⟩ Book sections hal-02821446v1
	Carbohydrate-Active Enzymes Database: Principles and Classification of Glycosyltransferases Etienne Danchin , Corinne Rancurel Bioinformatics for Glycobiology and Glycomics : An Introduction, John Wiley and Sons, 2009, 9780470016671. ⟨10.1002/9780470029619.ch5⟩ Book sections hal-02816858v1
	Computational reconstruction of ancestral genomic regions from evolutionarily conserved gene clusters Etienne G. J. Danchin , Eric A. Gaucher , Pierre Pontarotti Ancestral Sequence Reconstruction, oxford university press, pp.252, 2007, 9780199299188 Book sections hal-00827430v1
	Computational reconstruction of ancestral genomic regions from evolutionarily conserved gene clusters Etienne Danchin , Pierre Pontarotti , Eric A. Gaucher Ancestral Sequence Reconstruction, Oxford University Press, 272 p., 2007, 978-0199545575 Book sections hal-02820457v1

	Method for reducing the plant-parasitic nematode infestation level in a plant Etienne Danchin , Pierre Abad , Laetitia Perfus Barbeoch Patent n° : EP2845902 A1. 2013 Patents hal-02792876v1

	High-fidelity annotated genome of the polyploid and quarantine root-knot nematode, Meloidogyne enterolobii Marine Poullet , Hemanth Gopal , Corinne Rancurel , Marine Sallaberry , Celine Lopez-Roques 2024 Preprints, Working Papers, ... hal-04701569v1
	Chromatin structure changes in Daphnia populations upon exposure to environmental cues – or – The discovery of Wolterecks “Matrix” Ronaldo de Carvalho Augusto , Aki Minoda , Oliver Rey , Céline Cosseau , Cristian Chaparro 2020 Preprints, Working Papers, ... hal-02991174v1
	The polyploid genome of the mitotic parthenogenetic root-knot nematode Meloidogyne enterolobii Georgios Koutsovoulos , Marine Poullet , Abdelnaser El Ashry , Djampa Kozlowski , Erika Sallet 2019 Preprints, Working Papers, ... hal-02788762v1

	Genome evolution and adaptations to plant parasitism in nematodes Etienne Danchin Life Sciences [q-bio]. Université Nice Sophia Antipolis, 2014 Habilitation à diriger des recherches tel-02801776v1

Danchin Etienne

Publications

Building integrated plant health surveillance: a proactive research agenda for anticipating and mitigating disease and pest emergence

Unzipped genome assemblies of polyploid root-knot nematodes reveal unusual and clade-specific telomeric repeats

Mate copying requires the coincidence detector Rutabaga in the mushroom bodies of Drosophila melanogaster

Genome sequence and annotation of Periconia digitata a hopeful biocontrol agent of phytopathogenic oomycetes

MHC-II distance between parents predicts sex allocation decisions in a genetically monogamous bird

Improvement of eukaryotic protein predictions from soil metagenomes

The importance of population heterogeneities in detecting social learning as the foundation of animal cultural transmission

AvP: A software package for automatic phylogenetic detection of candidate horizontal gene transfers

Female fruit flies copy the acceptance, but not the rejection, of a mate

A simple ATAC-seq protocol for population epigenetics

Movements of transposable elements contribute to the genomic plasticity and species diversification in an asexually reproducing nematode pest

Recent Advances in Population Genomics of Plant-Parasitic Nematodes

Genome Expression Dynamics Reveal the Parasitism Regulatory Landscape of the Root-Knot Nematode Meloidogyne incognita and a Promoter Motif Associated with Effector Genes

First evidence for a significant effect of the regression to the mean fallacy in mate copying: a comment on Davies et al

Genome structure and content of the rice root‐knot nematode ( Meloidogyne graminicola )

Genome assembly and annotation of Meloidogyne enterolobii, an emerging parthenogenetic root- knot nematode

Evolutionarily conserved plant genes responsive to root-knot nematodes identified by comparative genomics

Cross-Kingdom analysis of diversity, evolutionary history, and site selection within the eukaryotic macrophage migration inhibitory factor superfamily

Epigenetically facilitated mutational assimilation: epigenetics as a hub within the inclusive evolutionary synthesis

Epigenetics and insect polyphenism: mechanisms and climate change impacts

Contrasting effects of wild arachis dehydrin under abiotic and biotic stresses

Response to Comment on “Cultural flies: Conformist social learning in fruitflies predicts long-lasting mate-choice traditions”

Population genomics supports clonal reproduction and multiple independent gains and losses of parasitic abilities in the most devastating nematode pest

Signatures of the evolution of Parthenogenesis and Cryptobiosis in the Genomes of Panagrolaimid Nematodes

Gene copy number variations as signatures of adaptive evolution in the parthenogenetic, plant-parasitic nematode Meloidogyne incognita

Dopamine and serotonin are both required for mate-copying in Drosophila melanogaster

Teratosphaeria stem canker disease on Eucalypt in Italy

A Chemosensory GPCR as a Potential Target to Control the Root-Knot Nematode Meloidogyne incognita Parasitism in Plants

Functional diversification of horizontally acquired glycoside hydrolase family 45 (GH45) proteins in phytophaga beetles

Comparative root transcriptome of wild Arachis reveals NBS-LRR genes related to nematode resistance

Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexually reproducing species

Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes

The transcriptomes of Xiphinema index and Longidorus elongatus Suggest Independent acquisition of some plant parasitism genes by horizontal gene transfer in early-branching nematodes

Genome-wide analysis of expansin superfamily in wild Arachis discloses a stress-responsive expansin-like B gene.

Alienness: rapid detection of candidate horizontal gene transfers across the tree of life

Nod Factor Effects on Root Hair-Specific Transcriptome of Medicago truncatula: Focus on Plasma Membrane Transport Systems and Reactive Oxygen Species Networks.

Lateral gene transfer in eukaryotes: tip of the iceberg or of the ice cube?

The transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes

Horizontal gene transfer of pectinases from bacteria preceded the diversification of stick and leaf insects

The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence

Prospects of herbivore egg-killing plant defenses for sustainable crop protection

Horizontal gene transfer from bacteria has enabled the plant-parasitic nematode [i]Globodera pallida[/i] to feed on host-derived sucrose

Parasitic success without sex – the nematode experience

Genomic and transcriptomic analysis of Laccaria bicolor CAZome reveals insights into polysaccharides remodelling during symbiosis establishment

The transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes

Root-knot nematodes pan-genomics reveals novel target genes for safer and more specific control

Top 10 plant-parasitic nematodes in molecular plant pathology

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

Diversity and evolution of root-knot nematodes, genus Meloidogyne

Identification of novel target genes for safer and more specific control of root-knot nematodes from a pan-genome mining

Signatures of adaptation to plant parasitism in nematode genomes

A root-knot nematode-secreted protein is injected into giant cells and targeted to the nuclei

Lateral gene transfers have polished animal genomes: lessons from nematodes

Single pH buffer refolding screen for protein from inclusion bodies

Contribution of lateral gene transfers to the genome composition and parasitic ability of root-knot nematodes.

Eukaryote to gut bacteria transfer of a glycoside hydrolase gene essential for starch breakdown in plants.

Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

The plant apoplasm is an important recipient compartment for nematode secreted proteins

What nematode genomes tell us about the importance of horizontal gene transfers in the evolutionary history of animals

Horizontal gene transfer in nematodes: a catalyst for plant parasitism

Identifying discriminative classification-based motifs in biological sequences

Identification of plant-parasitism genes in nematodes in silico screening and in vivo validation in Meloidogyne incognita.

Data-mining of the Meloidogyne incognita degradome and comparative analysis of proteases in nematodes

An Arabidopsis (malectin-like) leucine-rich repeat receptor-like kinase contributes to downy mildew disease

Genome-wide survey and analysis of microsatellites in nematodes, with a focus on the plant-parasitic species Meloidogyne incognita

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes

A Medicago truncatula NADPH oxidase is involved in symbiotic nodule functioning

The genomes of root-knot nematodes

The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion

CASSIOPE: an expert system for conserved regions searches

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

The genome sequence of the model ascomycete fungus Podospora anserina.

Evolution of major histocompatibility complex by "en bloc" duplication before mammalian radiation

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

Where do animal alpha-amylases come from

The use of evolutionary biology concepts for genome annotation