Access content directly

Danchin Etienne



Image document

Improvement of eukaryotic protein predictions from soil metagenomes

Carole Belliardo , Georgios D Koutsovoulos , Corinne Rancurel , Mathilde Clément , Justine Lipuma et al.
Scientific Data , 2022, 9 (1), pp.311. ⟨10.1038/s41597-022-01420-4⟩
Journal articles hal-03931195v1
Image document

A simple ATAC-seq protocol for population epigenetics

Ronaldo de Carvalho Augusto , Olivier Rey , Céline Cosseau , Cristian Chaparro , Jeremie Vidal-Dupiol et al.
Wellcome Open Research, 2021, 5, pp.121. ⟨10.12688/wellcomeopenres.15552.2⟩
Journal articles hal-03145575v2
Image document

Recent Advances in Population Genomics of Plant-Parasitic Nematodes

Josselin Montarry , Benjamin Mimee , Etienne G J Danchin , Georgios D Koutsovoulos , Dave T Ste-Croix et al.
Phytopathology, 2021, 111 (1), pp.40-48. ⟨10.1094/phyto-09-20-0418-rvw⟩
Journal articles hal-03734053v1
Image document

Genome structure and content of the rice root‐knot nematode ( Meloidogyne graminicola )

Ngan Thi Phan , Julie Orjuela , Etienne Danchin , Christophe C. Klopp , Laetitia Perfus‐barbeoch et al.
Ecology and Evolution, 2020, 10 (20), pp.11006-11021. ⟨10.1002/ece3.6680⟩
Journal articles hal-02988764v1
Image document

Genome assembly and annotation of Meloidogyne enterolobii, an emerging parthenogenetic root- knot nematode

Georgios Koutsovoulos , Marine Poullet , Abdelnaser Elashry , Erika Sallet , Martine da Rocha et al.
Scientific Data , 2020, 7 (1), pp.324. ⟨10.1038/s41597-020-00666-0⟩
Journal articles hal-02972492v1

Evolutionarily conserved plant genes responsive to root-knot nematodes identified by comparative genomics

Ana Paula Zotta Mota , Diana Fernandez , Fabricio Arraes , Anne-Sophie Petitot , Bruno Paes de Melo et al.
Molecular Genetics and Genomics, 2020, 295 (4), pp.1063-1078. ⟨10.1007/s00438-020-01677-7⟩
Journal articles hal-02991731v1
Image document

Cross-Kingdom analysis of diversity, evolutionary history, and site selection within the eukaryotic macrophage migration inhibitory factor superfamily

Claire Michelet , Etienne Danchin , Maëlle Jaouannet , Jürgen Bernhagen , Ralph Panstruga et al.
Genes, 2019, 10 (10), pp.740. ⟨10.3390/genes10100740⟩
Journal articles hal-02361285v1
Image document

Epigenetically facilitated mutational assimilation: epigenetics as a hub within the inclusive evolutionary synthesis

Etienne Danchin , Arnaud Pocheville , Olivier Rey , Benoit Pujol , Simon Blanchet et al.
Biological Reviews, 2019, 94 (1), pp.259-282. ⟨10.1111/brv.12453⟩
Journal articles hal-03007472v1
Image document

Contrasting effects of wild arachis dehydrin under abiotic and biotic stresses

Ana Paula Zotta Mota , Thais Nicolini Oliveira , Christina Cleo Vinson , Thomas Christopher Rhys Williams , Marcos Mota Do Carmo Costa et al.
Frontiers in Plant Science, 2019, 10, pp.1-16. ⟨10.3389/fpls.2019.00497⟩
Journal articles hal-02622455v1

Gene copy number variations as signatures of adaptive evolution in the parthenogenetic, plant-parasitic nematode Meloidogyne incognita

Philippe Castagnone-Serreno , Karine Mulet , Etienne Danchin , Georgios D. Koutsovoulos , Mégane Karaulic et al.
Molecular Ecology, 2019, 28 (10), pp.2559-2572. ⟨10.1111/mec.15095⟩
Journal articles hal-02629335v1
Image document

Signatures of the evolution of Parthenogenesis and Cryptobiosis in the Genomes of Panagrolaimid Nematodes

Philipp H. Schiffer , Etienne Danchin , Ann M. Burnell , Christopher J. Creevey , Simon Wong et al.
iScience, 2019, 21, pp.587-602. ⟨10.1016/j.isci.2019.10.039⟩
Journal articles hal-02444450v1
Image document

Population genomics supports clonal reproduction and multiple independent gains and losses of parasitic abilities in the most devastating nematode pest

Georgios Koutsovoulos , Eder Marques , Marie Jeanne Arguel , Laurent Duret , Andressa C. Z. Machado et al.
Evolutionary Applications, 2019, 13, pp.1-16. ⟨10.1111/eva.12881⟩
Journal articles hal-02444457v1

Teratosphaeria stem canker disease on Eucalypt in Italy

Salvatore Vitale , Laura Luongo , Etienne Danchin , Giovanni Mughini , Maria Gras et al.
European Journal of Plant Pathology, 2019, 153, pp.503-515. ⟨10.1007/s10658-018-1577-6⟩
Journal articles hal-02620419v1
Image document

A Chemosensory GPCR as a Potential Target to Control the Root-Knot Nematode Meloidogyne incognita Parasitism in Plants

Emmanuel Bresso , Diana Fernandez , Deisy X Amora , Philippe Noel , Anne-Sophie Petitot et al.
Molecules, 2019, 24 (20), pp.3798. ⟨10.3390/molecules24203798⟩
Journal articles hal-02324816v1
Image document

Response to Comment on “Cultural flies: Conformist social learning in fruitflies predicts long-lasting mate-choice traditions”

Arnaud Pocheville , Sabine Nöbel , Guillaume Isabel , Etienne Danchin
Science, 2019, 366 (6462), pp.eaaw9549. ⟨10.1126/science.aaw9549⟩
Journal articles hal-03091131v1
Image document

Functional diversification of horizontally acquired glycoside hydrolase family 45 (GH45) proteins in phytophaga beetles

Andre Busch , Etienne Danchin , Yannick Pauchet
BMC Evolutionary Biology, 2019, 19, pp.1-14. ⟨10.1186/s12862-019-1429-9⟩
Journal articles hal-02620256v1
Image document

Comparative root transcriptome of wild Arachis reveals NBS-LRR genes related to nematode resistance

Ana Paula Zotta Mota , Bruna Vidigal , Etienne G.J Danchin , Roberto Coiti Togawa , Soraya C.M. Leal-Bertioli et al.
BMC Plant Biology, 2018, 18, pp.2-16. ⟨10.1186/s12870-018-1373-7⟩
Journal articles hal-02622222v1
Image document

Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexually reproducing species

Loris Pratx , Corinne Rancurel , Martine da Rocha , Etienne Danchin , Philippe Castagnone Sereno et al.
BMC Genomics, 2018, 19, pp.1-21. ⟨10.1186/s12864-018-4686-x⟩
Journal articles hal-02626482v1
Image document

Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes

Romain Blanc-Mathieu , Laetitia Zurletto , Jean-Marc Aury , Martine da Rocha , Jerome Gouzy et al.
PLoS Genetics, 2017, 13 (6), pp.e1006777. ⟨10.1371/journal.pgen.1006777⟩
Journal articles hal-01602779v1
Image document

The transcriptomes of Xiphinema index and Longidorus elongatus Suggest Independent acquisition of some plant parasitism genes by horizontal gene transfer in early-branching nematodes

Etienne G J. Danchin , Laetitia Perfus-Barbeoch , Corinne Rancurel , Peter Thorpe , Martine da Rocha et al.
Genes, 2017, 8 (10), ⟨10.3390/genes8100287⟩
Journal articles hal-02624204v1

Genome-wide analysis of expansin superfamily in wild Arachis discloses a stress-responsive expansin-like B gene.

Larissa Arrais Guimaraes , Ana Paula Zotta Mota , Ana Claudia Guerra Araujo , Lucio Flavio de Alencar Figueiredo , Bruna Medeiros Pereira et al.
Plant Molecular Biology, 2017, ⟨10.1007/s11103-017-0594-8⟩
Journal articles hal-01605017v1
Image document

Alienness: rapid detection of candidate horizontal gene transfers across the tree of life

Corinne Rancurel , Ludovic Legrand , Etienne Danchin
Genes, 2017, 8 (10), pp.248. ⟨10.3390/genes8100248⟩
Journal articles hal-01609604v1
Image document

Lateral gene transfer in eukaryotes: tip of the iceberg or of the ice cube?

Etienne G. J. Danchin
BMC Biology, 2016, 14 (1), ⟨10.1186/s12915-016-0330-x⟩
Journal articles hal-01401096v1
Image document

Nod Factor Effects on Root Hair-Specific Transcriptome of Medicago truncatula: Focus on Plasma Membrane Transport Systems and Reactive Oxygen Species Networks.

Isabelle Damiani , Alice Drain , Marjorie Guichard , Sandrine Balzergue , Alexandre Boscari et al.
Frontiers in Plant Science, 2016, 7, pp.794. ⟨10.3389/fpls.2016.00794⟩
Journal articles hal-01354648v1
Image document

Prospects of herbivore egg-killing plant defenses for sustainable crop protection

Nina E. Fatouros , Antonino Cusumano , Etienne G.J. Danchin , Stefano Colazza
Ecology and Evolution, 2016, 6 (19), pp.1-13. ⟨10.1002/ece3.2365⟩
Journal articles hal-01413544v1
Image document

The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence

Sebastian Eves-van Den Akker , Dominik R. Laetsch , Peter Thorpe , Catherine J. Lilley , Etienne G. J. Danchin et al.
Genome Biology, 2016, 17 (1), pp.1-23. ⟨10.1186/s13059-016-0985-1⟩
Journal articles hal-01439090v1
Image document

Horizontal gene transfer of pectinases from bacteria preceded the diversification of stick and leaf insects

Matan Shelomi , Etienne Danchin , David Heckel , Benjamin Wipfler , Sven Bradler et al.
Scientific Reports, 2016, 6, ⟨10.1038/srep26388⟩
Journal articles hal-01324361v1

The transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes

S Eves-van den Akker , C.J. Lilley , Etienne Danchin , Corinne Rancurel , P.J.A. Cock et al.
Journal of Nematology, 2016, 48 (4), pp.317-317
Journal articles hal-01495400v1

Horizontal gene transfer from bacteria has enabled the plant-parasitic nematode [i]Globodera pallida[/i] to feed on host-derived sucrose

Etienne G.J. Danchin , Elena A. Guzeeva , Sophie Mantelin , Adokiye Berepiki , John T. Jones et al.
Molecular Biology and Evolution, 2016, on-line, ⟨10.1093/molbev/msw041⟩
Journal articles hal-01293531v1

Parasitic success without sex – the nematode experience

Philippe Castagnone-Sereno , Etienne Danchin
Journal of Evolutionary Biology, 2014, 27 (7), pp.1323-33. ⟨10.1111/jeb.12337⟩
Journal articles hal-02640000v1

Genomic and transcriptomic analysis of Laccaria bicolor CAZome reveals insights into polysaccharides remodelling during symbiosis establishment

Claire Veneault-Fourrey , Carine Commun , Annegret Kohler , Emmanuelle Morin , Raffaella Balestrini et al.
Fungal Genetics and Biology, 2014, 72, pp.168-181. ⟨10.1016/j.fgb.2014.08.007⟩
Journal articles hal-01123254v1

Root-knot nematodes pan-genomics reveals novel target genes for safer and more specific control

Etienne Danchin , Marie Jeanne Arguel , Amandine Fournier , Laetitia Perfus-Barbeoch , Marc Magliano et al.
Journal of Nematology, 2014, 46 (2), pp.150
Journal articles hal-01269022v1
Image document

The transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes

S Eves-van den Akker , C.J. Lilley , Etienne Danchin , Corinne Rancurel , P.J.A. Cock et al.
Genome Biology and Evolution, 2014, 6 (9), pp.2181-2194. ⟨10.1093/gbe/evu171⟩
Journal articles hal-02638653v1

Top 10 plant-parasitic nematodes in molecular plant pathology

John T. Jones , Annelies Haegeman , Etienne Danchin , Hari S. Gaur , Johannes Helder et al.
Molecular Plant Pathology, 2013, 14 (6), 16 p. ⟨10.1111/mpp.12057⟩
Journal articles hal-02651616v1
Image document

Identification of novel target genes for safer and more specific control of root-knot nematodes from a pan-genome mining

Etienne Danchin , Marie Jeanne Arguel , Amandine Fournier , Laetitia Zurletto , Marc Magliano et al.
PLoS Pathogens, 2013, 9 (10), pp.1-15. ⟨10.1371/journal.ppat.1003745⟩
Journal articles hal-01137164v1

Diversity and evolution of root-knot nematodes, genus Meloidogyne

Philippe Castagnone-Sereno , Etienne Danchin , Laetitia Perfus-Barbeoch , Pierre Abad
Annual Review of Phytopathology, 2013, 51, pp.1-18. ⟨10.1146/annurev-phyto-082712-102300⟩
Journal articles hal-02650089v1
Image document

Signatures of adaptation to plant parasitism in nematode genomes

David Mck. Bird , John T. Jones , Charles H. Opperman , Taisei Kikuchi , Etienne Danchin et al.
Parasitology, 2013, 142, pp.1-14. ⟨10.1017/S0031182013002163⟩
Journal articles hal-01137177v1
Image document

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

Jean-François Flot , Boris Hespeels , Xiang Li , Benjamin Noel , Irina Arkhipova et al.
Nature, 2013, 500 (7463), pp.453-457. ⟨10.1038/nature12326⟩
Journal articles hal-01282538v1

Single pH buffer refolding screen for protein from inclusion bodies

Bruno Coutard , Etienne Danchin , Rachid Oubelaid , Bruno Canard , Christophe Bignon et al.
Protein Expression and Purification, 2012, 82 (2), pp.352-359. ⟨10.1016/j.pep.2012.01.014⟩
Journal articles hal-02649344v1
Image document

Contribution of lateral gene transfers to the genome composition and parasitic ability of root-knot nematodes.

Julien Paganini , Amandine Campan-Fournier , Martine da Rocha , Philippe Gouret , Pierre Pontarotti et al.
PLoS ONE, 2012, 7 (11), pp.e50875. ⟨10.1371/journal.pone.0050875⟩
Journal articles hal-00831026v1
Image document

Lateral gene transfers have polished animal genomes: lessons from nematodes

Etienne Danchin , Marie-Noelle Rosso
Frontiers in Cellular and Infection Microbiology, 2012, 2 (27), pp.1-5. ⟨10.3389/fcimb.2012.00027⟩
Journal articles hal-01267787v1

Eukaryote to gut bacteria transfer of a glycoside hydrolase gene essential for starch breakdown in plants.

Maria Cecilia Arias , Etienne G J Danchin , Pedro Coutinho , Bernard Henrissat , Steven Ball et al.
Mobile Genetic Elements, 2012, 2 (2), pp.81-87. ⟨10.4161/mge.20375⟩
Journal articles hal-00862309v1

A root-knot nematode-secreted protein is injected into giant cells and targeted to the nuclei

Maëlle Jaouannet , Laetitia Perfus-Barbeoch , Emeline Deleury , Marc Magliano , Gilbert Engler et al.
New Phytologist, 2012, 194 (4), pp.924 - 931. ⟨10.1111/j.1469-8137.2012.04164.x⟩
Journal articles hal-02648827v1

Horizontal gene transfer in nematodes: a catalyst for plant parasitism

Annelies Haegeman , John T. Jones , Etienne Danchin
Molecular Plant-Microbe Interactions, 2011, 24 (8), pp.879-887. ⟨10.1094/MPMI-03-11-0055⟩
Journal articles hal-02652678v1
Image document

The plant apoplasm is an important recipient compartment for nematode secreted proteins

Paulo Vieira , Etienne Danchin , Cédric Neveu , Carine Crozat , Stéphanie Jaubert et al.
Journal of Experimental Botany, 2011, 62 (3), pp.1241-1253. ⟨10.1093/jxb/erq352⟩
Journal articles hal-02644552v1
Image document

What nematode genomes tell us about the importance of horizontal gene transfers in the evolutionary history of animals

Etienne Danchin
Mobile Genetic Elements, 2011, 1 (4), pp.1-5
Journal articles hal-02641806v1

Data-mining of the Meloidogyne incognita degradome and comparative analysis of proteases in nematodes

Philippe Castagnone , Emeline Deleury , Etienne Danchin , Laetitia Perfus-Barbeoch , Pierre Abad et al.
Genomics, 2011, 97 (1), pp.29-36. ⟨10.1016/j.ygeno.2010.10.002⟩
Journal articles hal-02644216v1
Image document

Identifying discriminative classification-based motifs in biological sequences

Celine Vens , Marie-Noelle Rosso , Etienne Danchin
Bioinformatics, 2011, 27 (9), pp.1231-1238. ⟨10.1093/bioinformatics/btr110⟩
Journal articles hal-02652585v1

Identification of plant-parasitism genes in nematodes in silico screening and in vivo validation in Meloidogyne incognita.

Mj. Arguel , Amandine Fournier , L. Perfus-Barbeoch , Eg. Danchin , Mn. Rosso et al.
Communications in Agricultural and Applied Biological Sciences, 2011, 76 (3), pp.409-412
Journal articles hal-02303156v1
Image document

Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

Joelle J. Amselem , Christina A. Cuomo , Jan A. L. van Kan , Muriel M. Viaud , Ernesto P. Benito et al.
PLoS Genetics, 2011, 7 (8), ⟨10.1371/journal.pgen.1002230⟩
Journal articles hal-01190236v1

An Arabidopsis (malectin-like) leucine-rich repeat receptor-like kinase contributes to downy mildew disease

Sophie Hok , Etienne Danchin , Valerie Allasia , Franck Panabières , Agnès Attard et al.
Plant, Cell and Environment, 2011, 34 (11), pp.1944-1957. ⟨10.1111/j.1365-3040.2011.02390.x⟩
Journal articles hal-02650905v1

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

Li-Jun Ma , Charlotte van Der Does , Katherine A. Borkovich , Jeffrey J. Coleman , Marie-José Daboussi et al.
Nature, 2010, 464 (7287), pp.367-373. ⟨10.1038/nature08850⟩
Journal articles hal-02662964v1
Image document

Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes

Etienne Danchin , Marie-Noelle Rosso , Paulo Vieira , Janice de Almeida-Engler , Pedro M Coutinho et al.
Proceedings of the National Academy of Sciences of the United States of America, 2010, 107 (41), pp.17651-17656
Journal articles hal-02669078v1
Image document

Genome-wide survey and analysis of microsatellites in nematodes, with a focus on the plant-parasitic species Meloidogyne incognita

Philippe Castagnone , Etienne Danchin , Emeline Deleury , Thomas T. Guillemaud , Thibaut Malausa et al.
BMC Genomics, 2010, 11, pp.598. ⟨10.1186/1471-2164-11-598⟩
Journal articles hal-02663550v1
Image document

A Medicago truncatula NADPH oxidase is involved in symbiotic nodule functioning

Daniel Marino , Emilie Andrio , Etienne Danchin , Elodie Oger , Sebastien Gucciardo et al.
New Phytologist, 2010, 189 (2), pp.580-592. ⟨10.1111/j.1469-8137.2010.03509.x⟩
Journal articles hal-02665315v1
Image document

The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion

Jeffrey J. Coleman , Steve D. Rounsley , Marianela Rodriguez-Carres , Alan Kuo , Catherine C. Wasmann et al.
PLoS Genetics, 2009, 5 (8), pp.e1000618
Journal articles hal-02664932v1

The genomes of root-knot nematodes

David Mck Bird , Valerie M. Williamson , Pierre Abad , James Mccarter , Etienne Danchin et al.
Annual Review of Phytopathology, 2009, 47, pp.333-351. ⟨10.1146/annurev-phyto-080508-081839⟩
Journal articles hal-02662834v1
Image document

CASSIOPE: an expert system for conserved regions searches

Virginie Lopez Rascol , Anthony Levasseur , Olivier Chabrol , Simona Grusea , Philippe Gouret et al.
BMC Bioinformatics, 2009, 10, pp.284
Journal articles hal-02661323v1
Image document

The genome sequence of the model ascomycete fungus Podospora anserina.

Eric Espagne , Olivier Lespinet , Fabienne Malagnac , Corinne da Silva , Olivier Jaillon et al.
Genome Biology, 2008, 9 (5), pp.R77. ⟨10.1186/gb-2008-9-5-r77⟩
Journal articles hal-00286300v1
Image document

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

F. Martin , A. Aerts , D. Ahrén , A. Brun , E. G. J. Danchin et al.
Nature, 2008, 452 (7183), pp.88-93. ⟨10.1038/nature06556⟩
Journal articles halsde-00261893v1

Evolution of major histocompatibility complex by "en bloc" duplication before mammalian radiation

Elodie Darbo , Etienne Danchin , Michael Mcdermott , Pierre Pontarotti
Immunogenetics, 2008, 60 (8), pp.423-438. ⟨10.1007/s00251-008-0301-7⟩
Journal articles hal-02664403v1

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

Diego Martínez , Randy Berka , Bernard Henrissat , Markku Saloheimo , Mikko Arvas et al.
Nature Biotechnology, 2008, 26, pp.553-560. ⟨10.1038/nbt1403⟩
Journal articles hal-02669177v1

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

Pierre Abad , Jerome Gouzy , Jean-Marc Aury , Philippe Castagnone , Etienne Danchin et al.
Nature Biotechnology, 2008, 26 (8), pp.909-915. ⟨10.1038/nbt.1482⟩
Journal articles hal-01189285v1
Image document

The use of evolutionary biology concepts for genome annotation

Etienne Danchin , Anthony Levasseur , Virginie Lopez Rascol , Philippe Gouret , Pierre Pontarotti et al.
Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 2007, 308B (1), pp.26-36. ⟨10.1002/jez.b.21131⟩
Journal articles hal-02658043v1

Where do animal alpha-amylases come from? An interkingdom trip.

J.-L. da Lage , E.G.J. Danchin , D. Casane
FEBS Letters, 2007, 581, pp.3927-3935
Journal articles hal-00161062v1

Conceptual bases for quantifying the role of the environment on gene evolution: the participation of positive selection and neutral evolution

Anthony Levasseur , Ludovic Orlando , Xavier Bailly , Michel C. Milinkovitch , Etienne Danchin et al.
Biological Reviews, 2007, 82 (4), pp.551-572. ⟨10.1111/j.1469-185X.2007.00024.x⟩
Journal articles hal-02668139v1

Biotechnological applications and potential of fungal feruloyl esterases based on prevalence, classification and biochemical diversity

Isabelle Benoit , Etienne Danchin , Robert-Jan Bleichrodt , Ronald de Vries
Biotechnology Letters, 2007, 30 (3), pp.387-396. ⟨10.1007/s10529-007-9564-6⟩
Journal articles hal-02656772v1

Where do animal alpha-amylases come from

Jean-Luc da Lage , Etienne Danchin , Didier Casane
FEBS Letters, 2007, 581 (21), pp.3927-3935. ⟨10.1016/j.febslet.2007.07.019⟩
Journal articles hal-02663351v1

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

Herman Pel , Johannes de Winde , David Archer , Paul Dyer , Gerald Hofmann et al.
Nature Biotechnology, 2007, 25 (2), pp.221-231. ⟨10.1038/nbt1282⟩
Journal articles hal-02668442v1

Dividing the large glycoside hydrolase family 13 into subfamilies: towards improved functional annotations of alpha-amylase-related proteins

Mark R. Stam , Etienne Danchin , Corinne Rancurel , Pedro M Coutinho , Bernard Henrissat et al.
Protein Engineering, Design and Selection, 2006, 19 (12), pp.555-562. ⟨10.1093/protein/gzl044⟩
Journal articles hal-02668771v1

Des champignons qui carburent: de l'étude du génome à la production industrielle

Marcel M. Asther , Eric Record , Isabelle Gimbert , Jean-Claude Sigoillot , Anthony Levasseur et al.
Biofutur, 2006, 269, pp.28-32
Journal articles hal-02664475v1
Image document

Eleven ancestral gene families lost in mammals and vertebrates while otherwise universally conserved in animals

Etienne Danchin , Philippe Gouret , Pierre Pontarotti
BMC Evolutionary Biology, 2006, 6 (5), 10 p. ⟨10.1186/1471-2148-6-5⟩
Journal articles hal-02668451v1
Image document

A rigorous method for multigenic families' functional annotation: the peptidyl arginine deiminase (PADs) proteins family example.

Nathalie Balandraud , Philippe Gouret , Etienne G. J. Danchin , M Blanc , D Zinn et al.
BMC Genomics, 2005, 6, pp.153. ⟨10.1186/1471-2164-6-153⟩
Journal articles inserm-00091307v1
Image document

FIGENIX: intelligent automation of genomic annotation: expertise integration in a new software platform

Philippe Gouret , Vérane Vitiello , Nathalie Balandraud , André Gilles , Pierre Pontarotti et al.
BMC Bioinformatics, 2005, 6, 21 p. ⟨10.1186/1471-2105-6-198⟩
Journal articles hal-02681213v1

Statistical evidence for a more than 800-million-year-old evolutionarily conserved genomic region in our genome

Etienne Danchin , Pierre Pontarotti
Journal of Molecular Evolution, 2004, 59 (5), pp.587-597. ⟨10.1007/s00239-004-2648-1⟩
Journal articles hal-02677409v1
Image document

High similarity between flanking regions of different microsatellites detected within each of two species of Lepidoptera

Emese Meglécz , Frederic Petenian , Etienne Danchin , Armelle Coeur d'Acier , Jean-Yves Rasplus et al.
Molecular Ecology, 2004, 13 (6), pp.1693-1700. ⟨10.1111/j.1365-294X.2004.02163.x⟩
Journal articles hal-02678374v1

The major histocompatibility complex origin

Etienne Danchin , Vérane Vitiello , Alexandre Vienne , Olivier Richard , Philippe Gouret et al.
Immunological Reviews, 2004, 198, pp.216-232
Journal articles hal-02682552v1

Towards the reconstruction of the bilaterian ancestral pre-MHC region

Etienne Danchin , Pierre Pontarotti
Trends in Genetics, 2004, 20 (12), pp.587-591. ⟨10.1016/j.tig.2004.09.009⟩
Journal articles hal-02677408v1

Evolution of the proto-MHC ancestral region

Alexandre Vienne , Takashi Shiina , Laurent Abi-Rached , Etienne Danchin , Vérane Vitiello et al.
Immunogenetics, 2003, 55 (7), pp.429-436. ⟨10.1007/s00251-003-0601-x⟩
Journal articles hal-02683166v1

Conservation of the MHC-like region throughout evolution

Etienne Danchin , Laurent Abi-Rached , André Gilles , Pierre Pontarotti
Immunogenetics, 2003, 55 (3), pp.141-148. ⟨10.1007/s00251-003-0562-0⟩
Journal articles hal-02681710v1
Image document

The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals in-sights into the bases of parasitism and virulence

S. Eves-van den Akker , D. R. Laetsch , P. Thorpe , C. J. Lilley , Etienne Danchin et al.
Joint Meeting of the Society of Nematologists and the Organization of Nematologists of Tropical America (ONTA), 2016, Jul 2016, Montréal, Canada. 387 p
Conference papers hal-01604220v1

Comparative genomics/transcriptomics to study effector gene birth in plant-parasitic nematodes

S. Eves-van den Akker , C. J. Lilley , Etienne Danchin , Corinne Rancurel , P. J. A. Cock et al.
Society of Nematologists Annual Meeting 2014, Society of Nematologists. Marceline, Missouri, USA., 2015, Marceline, United States. 1 p
Conference papers hal-02741588v1

Investigating the acetylcholine receptor diversity and specificity in parasitic nematodes

Cédric Neveu , Elise Courtot , Robin N. Beech , Abdallah Harmache , Jacques J. Cortet et al.
NemaTours : Bringing worms together, Le Studium - Loire Valley Institute for Advanced Studies. FRA., Jul 2014, Tours, France
Conference papers hal-02741506v1

Les récepteurs nicotiniques des nématodes parasites : cibles pharmacologiques pour le developpement de nouveaux anthelminthiques

Elise Courtot , Claude Charvet , Nicolas Peineau , Etienne Danchin , Philippe Castagnone et al.
Journées d'Animation Scientifique du Département Santé Animale, Institut National de Recherche Agronomique (INRA). UAR Département Santé Animale (0564)., Oct 2013, Cap d'Agde, France. 104 p
Conference papers hal-02748100v1

Genomic perspectives on the long-term absence of sexual reproduction in animals

Etienne Danchin , Jean-François Flot , Laetitia Perfus-Barbeoch , Karine van Doninck
Evolutionary biology – Concepts, biodiversity, macroevolution and genome evolution, Springer-Verlag, 345 p., 2011, 978-3-642-20762-4. ⟨10.1007/978-3-642-20763-1_13⟩
Book sections hal-02809907v1

The Genome Sequence of Meloidogyne incognita Unveils Mechanisms of Adaptation to Plant-Parasitism in Metazoa

Etienne Danchin , Laetitia Perfus-Barbeoch
Evolutionary Biology, Concept, Modeling, and Application, Editions Springer, pp.287-302, 2009, 978-3-642-00951-8. ⟨10.1007/978-3-642-00952-5_17⟩
Book sections hal-02821446v1

Carbohydrate-Active Enzymes Database: Principles and Classification of Glycosyltransferases

Etienne Danchin , Corinne Rancurel
Bioinformatics for Glycobiology and Glycomics : An Introduction, John Wiley and Sons, 2009, 9780470016671. ⟨10.1002/9780470029619.ch5⟩
Book sections hal-02816858v1

Computational reconstruction of ancestral genomic regions from evolutionarily conserved gene clusters

Etienne G. J. Danchin , Eric A. Gaucher , Pierre Pontarotti
Ancestral Sequence Reconstruction, oxford university press, pp.252, 2007, 9780199299188
Book sections hal-00827430v1

Computational reconstruction of ancestral genomic regions from evolutionarily conserved gene clusters

Etienne Danchin , Pierre Pontarotti , Eric A. Gaucher
Ancestral Sequence Reconstruction, Oxford University Press, 272 p., 2007, 978-0199545575
Book sections hal-02820457v1
Image document

Genome evolution and adaptations to plant parasitism in nematodes

Etienne Danchin
Life Sciences [q-bio]. Université Nice Sophia Antipolis, 2014
Habilitation à diriger des recherches tel-02801776v1