Danchin Etienne

Publications

Article dans une revue (108)

High-fidelity annotated triploid genome of the quarantine root-knot nematode, Meloidogyne enterolobii Marine Poullet,Hemanth Konigopal,Corinne Rancurel,Marine Sallaberry,Celine Lopez-Roqueset al. Scientific Data , 2025, 12 (1), pp.184. ⟨10.1038/s41597-025-04434-w⟩ Article dans une revue hal-04954634v1
Orphan and de novo Genes in Fungi and Animals: Identification, Origins and Functions Ercan Seçkin,Dominique Colinet,Edoardo Sarti,Etienne Danchin Genome Biology and Evolution, 2025, 17 (12), ⟨10.1093/gbe/evaf220⟩ Article dans une revue hal-05455139v1
High-resolution genome assembly and linkage mapping in Meloidogyne hapla reveal non-canonical telomere repeats and recombination hotspots associated with effector proteins Pallavi Shakya,Muhammad I. Maulana,Etienne Danchin,M. Laurens Voogt,Stefan J.S. van de Ruitenbeeket al. PLoS Pathogens, 2025, 21 (11), pp.e1013706. ⟨10.1371/journal.ppat.1013706⟩ Article dans une revue hal-05538129v1
Functional Carbohydrate-Active Enzymes Acquired by Horizontal Gene Transfer from Plants in the Whitefly &lt;i&gt;Bemisia tabaci&lt;/i&gt; Dominique Colinet,Mireille Haon,Elodie Drula,Mathilde Boyer,Sacha Griselet al. Genome Biology and Evolution, 2025, 17 (2), pp.evaf012. ⟨10.1093/gbe/evaf012⟩ Article dans une revue hal-04968956v1
Intrinsic host range of the root-knot nematode Meloidogyne enterolobii and virulent M. incognita populations Hemanth Konigopal,Maria Finckh,Marc Bailly-Bechet,Etienne G.J. Danchin,Sebastian Kiewnick Frontiers in Plant Science, 2025, 16, pp.1668191. ⟨10.3389/fpls.2025.1668191⟩ Article dans une revue hal-05536013v1
Unzipped genome assemblies of polyploid root-knot nematodes reveal unusual and clade-specific telomeric repeats Ana Paula Zotta Mota,Georgios Koutsovoulos,Laetitia Perfus-Barbeoch,Evelin Despot-Slade,Karine Labadieet al. Nature Communications, 2024, 15 (1), pp.773. ⟨10.1038/s41467-024-44914-y⟩ Article dans une revue hal-04489824v1
Ionizing radiation responses appear incidental to desiccation responses in the bdelloid rotifer Adineta vaga Victoria Moris,Lucie Bruneau,Jérémy Berthe,Anne-Catherine Heuskin,Sébastien Penninckxet al. BMC Biology, 2024, 22 (1), pp.11. ⟨10.1186/s12915-023-01807-8⟩ Article dans une revue hal-04627533v1
In planta RNAi targeting Meloidogyne incognita Minc16803 gene perturbs nematode parasitism and reduces plant susceptibility Valdeir Junio Vaz Moreira,Daniele Heloísa Pinheiro,Isabela Tristan Lourenço-Tessutti,Marcos Fernando Basso,Maria Lisei-De-Saet al. Journal of Pest Science, 2024, 97 (1), pp.411-427. ⟨10.1007/s10340-023-01623-7⟩ Article dans une revue hal-04615381v1
Building integrated plant health surveillance: a proactive research agenda for anticipating and mitigating disease and pest emergence S. Soubeyrand,Arnaud Estoup,Astrid Cruaud,Sylvie Malembic-Maher,Christine Meynardet al. CABI Agriculture and Bioscience, 2024, 5, pp.72. ⟨10.1186/s43170-024-00273-8⟩ Article dans une revue (article de synthèse) hal-04672656v1
Identification and characterization of specific motifs in effector proteins of plant parasites using MOnSTER Giulia Calia,Paola Porracciolo,Yongpan Chen,Djampa Kozlowski,Hannes Schuleret al. Communications Biology, 2024, 7 (1), pp.850. ⟨10.1038/s42003-024-06515-9⟩ Article dans une revue hal-05282767v1
Genome sequence and annotation of Periconia digitata a hopeful biocontrol agent of phytopathogenic oomycetes Elena Bovio,Corinne Rancurel,Aurélie Seassau,Marc Magliano,Marie Gislardet al. Scientific Data , 2023, 10 (1), pp.583. ⟨10.1038/s41597-023-02440-4⟩ Article dans une revue hal-04198172v1
Mate copying requires the coincidence detector Rutabaga in the mushroom bodies of Drosophila melanogaster Sabine Nöbel,Etienne Danchin,Guillaume Isabel iScience, 2023, 26 (9), pp.107682. ⟨10.1016/j.isci.2023.107682⟩ Article dans une revue hal-04718788v1
AvP: A software package for automatic phylogenetic detection of candidate horizontal gene transfers Georgios D Koutsovoulos,Solène Granjeon Noriot,Marc Bailly-Bechet,Etienne G J Danchin,Corinne Rancurel PLoS Computational Biology, 2022, 18 (11), pp.e1010686. ⟨10.1371/journal.pcbi.1010686⟩ Article dans une revue hal-04080521v1
Female fruit flies copy the acceptance, but not the rejection, of a mate Sabine Noebel,Magdalena Assael-Monier,Laura Fargeot,Guillaume Lespagnol,Etienne Danchinet al. Behavioral Ecology, 2022, ⟨10.1093/beheco/arac071⟩ Article dans une revue hal-03818761v1
The genome and lifestage-specific transcriptomes of a plant-parasitic nematode and its host reveal susceptibility genes involved in trans-kingdom synthesis of vitamin B5 Shahid Siddique,Zoran Radakovic,Clarissa Hiltl,Clement Pellegrin,Thomas Baumet al. Nature Communications, 2022, 13 (1), pp.6190. ⟨10.1038/s41467-022-33769-w⟩ Article dans une revue hal-04169532v1
Improvement of eukaryotic protein predictions from soil metagenomes Carole Belliardo,Georgios D Koutsovoulos,Corinne Rancurel,Mathilde Clément,Justine Lipumaet al. Scientific Data , 2022, 9 (1), pp.311. ⟨10.1038/s41597-022-01420-4⟩ Article dans une revue (data paper) hal-03931195v1
MHC-II distance between parents predicts sex allocation decisions in a genetically monogamous bird Maxime Pineaux,Thomas Merkling,Etienne Danchin,Scott Hatch,Sarah Leclaireet al. Behavioral Ecology, 2022, 33 (1), pp.245-251. ⟨10.1093/beheco/arab130⟩ Article dans une revue hal-03770671v1
Genome Expression Dynamics Reveal the Parasitism Regulatory Landscape of the Root-Knot Nematode Meloidogyne incognita and a Promoter Motif Associated with Effector Genes Martine da Rocha,Caroline Bournaud,Julie Dazenière,Peter Thorpe,Marc Bailly-Bechetet al. Genes, 2021, 12 (5), pp.771. ⟨10.3390/genes12050771⟩ Article dans une revue hal-04617459v1
Dissecting protein domain variability in the core RNA interference machinery of five insect orders Fabricio Barbosa Monteiro Arraes,Diogo Martins-De-Sa,Daniel Noriega Vasquez,Bruno Paes Melo,Muhammad Faheemet al. RNA Biology, 2021, 18 (11), pp.1653-1681. ⟨10.1080/15476286.2020.1861816⟩ Article dans une revue hal-05153710v1
Chromosome-level genome assembly reveals homologous chromosomes and recombination in asexual rotifer Adineta vaga Paul Simion,Jitendra Narayan,Antoine Houtain,Alessandro Derzelle,Lyam Baudryet al. Science Advances , 2021, 7 (41), pp.eabg4216. ⟨10.1126/sciadv.abg4216⟩ Article dans une revue hal-03406292v1
Targeted transcriptomics reveals signatures of large-scale independent origins and concerted regulation of effector genes in Radopholus similis Paulo Vieira,Roxana Myers,Clement Pellegrin,Catherine Wram,Cedar Hesseet al. PLoS Pathogens, 2021, 17 (11), pp.e1010036. ⟨10.1371/journal.ppat.1010036⟩ Article dans une revue hal-05213942v1
A simple ATAC-seq protocol for population epigenetics Ronaldo de Carvalho Augusto,Olivier REY,Céline Cosseau,Cristian Chaparro,Jeremie Vidal-Dupiolet al. Wellcome Open Research, 2021, 5, pp.121. ⟨10.12688/wellcomeopenres.15552.2⟩ Article dans une revue hal-03145575v2
Recent Advances in Population Genomics of Plant-Parasitic Nematodes Josselin Montarry,Benjamin Mimee,Etienne G J Danchin,Georgios D Koutsovoulos,Dave T Ste-Croixet al. Phytopathology, 2021, 111 (1), pp.40-48. ⟨10.1094/phyto-09-20-0418-rvw⟩ Article dans une revue (article de synthèse) hal-03734053v1
Movements of transposable elements contribute to the genomic plasticity and species diversification in an asexually reproducing nematode pest Djampa Kozlowski,Rahim Hassanaly-Goulamhoussen,Martine da Rocha,Georgios Koutsovoulos,Marc Bailly-Bechetet al. Evolutionary Applications, 2021, 14 (7), pp.1844-1866. ⟨10.1111/eva.13246⟩ Article dans une revue hal-04617465v1
Chromatin landscape dynamics in the early development of the plant parasitic nematode Meloidogyne incognita Rahim Hassanaly-Goulamhoussen,Ronaldo de Carvalho Augusto,Nathalie Marteu-Garello,Arthur Péré,Bruno Faveryet al. Frontiers in Cell and Developmental Biology, 2021, 9, pp.765690. ⟨10.3389/fcell.2021.765690⟩ Article dans une revue hal-03467409v2
Genome assembly and annotation of Meloidogyne enterolobii, an emerging parthenogenetic root- knot nematode Georgios Koutsovoulos,Marine Poullet,Abdelnaser Elashry,Erika Sallet,Martine da Rochaet al. Scientific Data , 2020, 7 (1), pp.324. ⟨10.1038/s41597-020-00666-0⟩ Article dans une revue (data paper) hal-02972492v1
Population genomics supports clonal reproduction and multiple independent gains and losses of parasitic abilities in the most devastating nematode pest Georgios Koutsovoulos,Eder Marques,Marie Jeanne Arguel,Laurent Duret,Andressa C. Z. Machadoet al. Evolutionary Applications, 2020, 13, pp.442-457. ⟨10.1111/eva.12881⟩ Article dans une revue hal-02444457v1
Characterization of raffinose metabolism genes uncovers a wild Arachis galactinol synthase conferring tolerance to abiotic stresses Christina C Vinson,Christina C Vinson,Ana P Z Mota,Brenda N Porto,Thais N Oliveiraet al. Scientific Reports, 2020, 10 (1), ⟨10.1038/s41598-020-72191-4⟩ Article dans une revue hal-03278098v1
Evolutionarily conserved plant genes responsive to root-knot nematodes identified by comparative genomics Ana Paula Zotta Mota,Diana Fernandez,Fabricio Arraes,Anne-Sophie Petitot,Bruno Paes de Meloet al. Molecular Genetics and Genomics, 2020, 295 (4), pp.1063-1078. ⟨10.1007/s00438-020-01677-7⟩ Article dans une revue hal-02991731v1
Genome sequence of the root-knot nematode Meloidogyne luci Nik Susič,Georgios Koutsovoulos,Cristian Riccio,Etienne Danchin,Mark Blaxteret al. Journal of Nematology, 2020, 52 (1), pp.e2020-25. ⟨10.21307/jofnem-2020-025⟩ Article dans une revue hal-05151184v1
Comparative Genomics Reveals Novel Target Genes towards Specific Control of Plant-Parasitic Nematodes Priscila Grynberg,Roberto Coiti Togawa,Leticia Dias de Freitas,Jose Dijair Antonino,Corinne Rancurelet al. Genes, 2020, 11 (11), pp.1347. ⟨10.3390/genes11111347⟩ Article dans une revue hal-03263736v1
First evidence for a significant effect of the regression to the mean fallacy in mate copying: a comment on Davies et al Etienne Danchin,Sabine Noebel,Arnaud Pocheville,Guillaume Isabel Behavioral Ecology, 2020, vol.31 (n°6), pp.1292-1293. ⟨10.1093/beheco/araa076⟩ Article dans une revue hal-03156620v1
Genome structure and content of the rice root‐knot nematode ( Meloidogyne graminicola ) Ngan Thi Phan,Julie Orjuela,Etienne Danchin,Christophe Klopp,Laetitia Perfus‐barbeochet al. Ecology and Evolution, 2020, 10 (20), pp.11006-11021. ⟨10.1002/ece3.6680⟩ Article dans une revue hal-02988764v1
Gene copy number variations as signatures of adaptive evolution in the parthenogenetic, plant-parasitic nematode &lt;em&gt;Meloidogyne incognita&lt;/em&gt; Philippe Castagnone-Sereno,Karine Mulet,Etienne Danchin,Georgios D. Koutsovoulos,Mégane Karaulicet al. Molecular Ecology, 2019, 28 (10), pp.2559-2572. ⟨10.1111/mec.15095⟩ Article dans une revue hal-02629335v1
Signatures of the evolution of Parthenogenesis and Cryptobiosis in the Genomes of Panagrolaimid Nematodes Philipp H. Schiffer,Etienne Danchin,Ann M. Burnell,Christopher J. Creevey,Simon Wonget al. iScience, 2019, 21, pp.587-602. ⟨10.1016/j.isci.2019.10.039⟩ Article dans une revue hal-02444450v1
A Chemosensory GPCR as a Potential Target to Control the Root-Knot Nematode Meloidogyne incognita Parasitism in Plants Emmanuel Bresso,Diana Fernandez,Deisy X Amora,Philippe Noel,Anne-Sophie Petitotet al. Molecules, 2019, 24 (20), pp.3798. ⟨10.3390/molecules24203798⟩ Article dans une revue hal-02324816v1
&lt;em&gt;Teratosphaeria&lt;/em&gt; stem canker disease on Eucalypt in Italy Salvatore Vitale,Laura Luongo,Etienne Danchin,Giovanni Mughini,Maria Graset al. European Journal of Plant Pathology, 2019, 153, pp.503-515. ⟨10.1007/s10658-018-1577-6⟩ Article dans une revue hal-02620419v1
Functional diversification of horizontally acquired glycoside hydrolase family 45 (GH45) proteins in phytophaga beetles Andre Busch,Etienne Danchin,Yannick Pauchet BMC Evolutionary Biology, 2019, 19, pp.1-14. ⟨10.1186/s12862-019-1429-9⟩ Article dans une revue hal-02620256v1
Cross-Kingdom analysis of diversity, evolutionary history, and site selection within the eukaryotic macrophage migration inhibitory factor superfamily Claire Michelet,Etienne Danchin,Maëlle Jaouannet,Jürgen Bernhagen,Ralph Panstrugaet al. Genes, 2019, 10 (10), pp.740. ⟨10.3390/genes10100740⟩ Article dans une revue hal-02361285v1
Epigenetically facilitated mutational assimilation: epigenetics as a hub within the inclusive evolutionary synthesis Etienne Danchin,Arnaud Pocheville,Olivier REY,Benoit Pujol,Simon Blanchet Biological Reviews, 2019, 94 (1), pp.259-282. ⟨10.1111/brv.12453⟩ Article dans une revue hal-03007472v1
Response to Comment on “Cultural flies: Conformist social learning in fruitflies predicts long-lasting mate-choice traditions” Arnaud Pocheville,Sabine Nöbel,Guillaume Isabel,Etienne Danchin Science, 2019, 366 (6462), pp.eaaw9549. ⟨10.1126/science.aaw9549⟩ Article dans une revue hal-03091131v1
Epigenetics and insect polyphenism: mechanisms and climate change impacts Gautier Richard,Gaël Le Trionnaire,Etienne Danchin,Arnaud Sentis Current Opinion in Insect Science, 2019, 35, pp.138-145. ⟨10.1016/j.cois.2019.06.013⟩ Article dans une revue (article de synthèse) hal-02457199v1
Contrasting effects of wild &lt;em&gt;arachis&lt;/em&gt; dehydrin under abiotic and biotic stresses Ana Paula Zotta Mota,Thais Nicolini Oliveira,Christina Cleo Vinson,Thomas Christopher Rhys Williams,Marcos Mota Do Carmo Costaet al. Frontiers in Plant Science, 2019, 10, pp.1-16. ⟨10.3389/fpls.2019.00497⟩ Article dans une revue hal-02622455v1
Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes &lt;em&gt;Meloidogyne&lt;/em&gt; spp., with a focus on the asexually reproducing species Loris Pratx,Corinne Rancurel,Martine da Rocha,Etienne Danchin,Philippe Castagnone-Serenoet al. BMC Genomics, 2018, 19, pp.1-21. ⟨10.1186/s12864-018-4686-x⟩ Article dans une revue hal-02626482v1
Overwintering aggregations are part of Hippodamia undecimnotata’s (Coleoptera: Coccinellidae) mating system Eline Catherine Susset,Jean‐louis Hemptinne,Etienne Danchin,Alexandra Magro PLoS ONE, 2018, 13 (6), pp.e0197108. ⟨10.1371/journal.pone.0197108⟩ Article dans une revue hal-02104347v1
Comparative root transcriptome of wild &lt;em&gt;Arachis&lt;/em&gt; reveals NBS-LRR genes related to nematode resistance Ana Paula Zotta Mota,Bruna Vidigal,Etienne G.J Danchin,Roberto Coiti Togawa,Soraya C.M. Leal-Bertioliet al. BMC Plant Biology, 2018, 18, pp.2-16. ⟨10.1186/s12870-018-1373-7⟩ Article dans une revue hal-02622222v1
Genome-wide analysis of expansin superfamily in wild Arachis discloses a stress-responsive expansin-like B gene. Larissa Arrais Guimaraes,Ana Paula Zotta Mota,Ana Claudia Guerra Araujo,Lucio Flavio de Alencar Figueiredo,Bruna Medeiros Pereiraet al. Plant Molecular Biology, 2017, ⟨10.1007/s11103-017-0594-8⟩ Article dans une revue hal-01605017v1
Alienness: rapid detection of candidate horizontal gene transfers across the tree of life Corinne Rancurel,Ludovic Legrand,Etienne Danchin Genes, 2017, 8 (10), pp.248. ⟨10.3390/genes8100248⟩ Article dans une revue hal-01609604v1
Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes Romain Blanc-Mathieu,Laetitia Zurletto,Jean-Marc Aury,Martine da Rocha,Jerome Gouzyet al. PLoS Genetics, 2017, 13 (6), pp.e1006777. ⟨10.1371/journal.pgen.1006777⟩ Article dans une revue hal-01602779v1
The transcriptomes of &lt;em&gt;Xiphinema index&lt;/em&gt; and &lt;em&gt;Longidorus elongatus&lt;/em&gt; Suggest Independent acquisition of some plant parasitism genes by horizontal gene transfer in early-branching nematodes Etienne G J. Danchin,Laetitia Perfus-Barbeoch,Corinne Rancurel,Peter Thorpe,Martine da Rochaet al. Genes, 2017, 8 (10), ⟨10.3390/genes8100287⟩ Article dans une revue hal-02624204v1
The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence Sebastian Eves-van Den Akker,Dominik R. Laetsch,Peter Thorpe,Catherine J. Lilley,Etienne G. J. Danchinet al. Genome Biology, 2016, 17 (1), pp.1-23. ⟨10.1186/s13059-016-0985-1⟩ Article dans une revue hal-01439090v1
Prospects of herbivore egg-killing plant defenses for sustainable crop protection Nina E. Fatouros,Antonino Cusumano,Etienne G.J. Danchin,Stefano Colazza Ecology and Evolution, 2016, 6 (19), pp.1-13. ⟨10.1002/ece3.2365⟩ Article dans une revue (article de synthèse) hal-01413544v1
Horizontal gene transfer from bacteria has enabled the plant-parasitic nematode [i]Globodera pallida[/i] to feed on host-derived sucrose Etienne G.J. Danchin,Elena A. Guzeeva,Sophie Mantelin,Adokiye Berepiki,John T. Jones Molecular Biology and Evolution, 2016, on-line, ⟨10.1093/molbev/msw041⟩ Article dans une revue hal-01293531v1
Lateral gene transfer in eukaryotes: tip of the iceberg or of the ice cube? Etienne G. J. Danchin BMC Biology, 2016, 14 (1), ⟨10.1186/s12915-016-0330-x⟩ Article dans une revue hal-01401096v1
Horizontal gene transfer of pectinases from bacteria preceded the diversification of stick and leaf insects Matan Shelomi,Etienne Danchin,David Heckel,Benjamin Wipfler,Sven Bradleret al. Scientific Reports, 2016, 6, ⟨10.1038/srep26388⟩ Article dans une revue hal-01324361v1
The transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes S Eves-van den Akker,C.J. Lilley,Etienne Danchin,Corinne Rancurel,P.J.A. Cocket al. Journal of Nematology, 2016, 48 (4), pp.317-317 Article dans une revue hal-01495400v1
Nod Factor Effects on Root Hair-Specific Transcriptome of Medicago truncatula: Focus on Plasma Membrane Transport Systems and Reactive Oxygen Species Networks. Isabelle Damiani,Alice Drain,Marjorie Guichard,Sandrine Balzergue,Alexandre Boscariet al. Frontiers in Plant Science, 2016, 7, pp.794. ⟨10.3389/fpls.2016.00794⟩ Article dans une revue hal-01354648v1
Root-knot nematodes pan-genomics reveals novel target genes for safer and more specific control Etienne Danchin,Marie Jeanne Arguel,Amandine Fournier,Laetitia Perfus-Barbeoch,Marc Maglianoet al. Journal of Nematology, 2014, 46 (2), pp.150 Article dans une revue hal-01269022v1
The transcriptome of &lt;em&gt;Nacobbus aberrans&lt;/em&gt; reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes S Eves-van den Akker,C.J. Lilley,Etienne Danchin,Corinne Rancurel,P.J.A. Cocket al. Genome Biology and Evolution, 2014, 6 (9), pp.2181-2194. ⟨10.1093/gbe/evu171⟩ Article dans une revue hal-02638653v1
Genomic and transcriptomic analysis of Laccaria bicolor CAZome reveals insights into polysaccharides remodelling during symbiosis establishment Claire Veneault-Fourrey,Carine Commun,Annegret Kohler,Emmanuelle Morin,Raffaella Balestriniet al. Fungal Genetics and Biology, 2014, 72, pp.168-181. ⟨10.1016/j.fgb.2014.08.007⟩ Article dans une revue hal-01123254v1
Parasitic success without sex – the nematode experience Philippe Castagnone-Sereno,Etienne Danchin Journal of Evolutionary Biology, 2014, 27 (7), pp.1323-33. ⟨10.1111/jeb.12337⟩ Article dans une revue hal-02640000v1
Diversity and evolution of root-knot nematodes, genus Meloidogyne Philippe Castagnone-Sereno,Etienne Danchin,Laetitia Perfus-Barbeoch,Pierre Abad Annual Review of Phytopathology, 2013, 51, pp.1-18. ⟨10.1146/annurev-phyto-082712-102300⟩ Article dans une revue hal-02650089v1
Identification of novel target genes for safer and more specific control of root-knot nematodes from a pan-genome mining Etienne Danchin,Marie Jeanne Arguel,Amandine Fournier,Laetitia Zurletto,Marc Maglianoet al. PLoS Pathogens, 2013, 9 (10), pp.1-15. ⟨10.1371/journal.ppat.1003745⟩ Article dans une revue hal-01137164v1
Signatures of adaptation to plant parasitism in nematode genomes David Mck. Bird,John T. Jones,Charles H. Opperman,Taisei Kikuchi,Etienne Danchin Parasitology, 2013, 142, pp.1-14. ⟨10.1017/S0031182013002163⟩ Article dans une revue hal-01137177v1
Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga Jean-François Flot,Boris Hespeels,Xiang Li,Benjamin Noel,Irina Arkhipovaet al. Nature, 2013, 500 (7463), pp.453-457. ⟨10.1038/nature12326⟩ Article dans une revue hal-01282538v1
Top 10 plant-parasitic nematodes in molecular plant pathology John T. Jones,Annelies Haegeman,Etienne Danchin,Hari S. Gaur,Johannes Helderet al. Molecular Plant Pathology, 2013, 14 (6), 16 p. ⟨10.1111/mpp.12057⟩ Article dans une revue (article de synthèse) hal-02651616v1
Eukaryote to gut bacteria transfer of a glycoside hydrolase gene essential for starch breakdown in plants. Maria Cecilia Arias,Etienne G J Danchin,Pedro Coutinho,Bernard Henrissat,Steven Ball Mobile Genetic Elements, 2012, 2 (2), pp.81-87. ⟨10.4161/mge.20375⟩ Article dans une revue hal-00862309v1
Single pH buffer refolding screen for protein from inclusion bodies Bruno Coutard,Etienne Danchin,Rachid Oubelaid,Bruno Canard,Christophe Bignon Protein Expression and Purification, 2012, 82 (2), pp.352-359. ⟨10.1016/j.pep.2012.01.014⟩ Article dans une revue istex hal-02649344v1
Contribution of lateral gene transfers to the genome composition and parasitic ability of root-knot nematodes. Julien Paganini,Amandine Campan-Fournier,Martine da Rocha,Philippe Gouret,Pierre Pontarottiet al. PLoS ONE, 2012, 7 (11), pp.e50875. ⟨10.1371/journal.pone.0050875⟩ Article dans une revue hal-00831026v1
A root-knot nematode-secreted protein is injected into giant cells and targeted to the nuclei Maëlle Jaouannet,Laetitia Perfus-Barbeoch,Emeline Deleury,Marc Magliano,Gilbert Engleret al. New Phytologist, 2012, 194 (4), pp.924 - 931. ⟨10.1111/j.1469-8137.2012.04164.x⟩ Article dans une revue hal-02648827v1
Lateral gene transfers have polished animal genomes: lessons from nematodes Etienne Danchin,Marie-Noelle Rosso Frontiers in Cellular and Infection Microbiology, 2012, 2 (27), pp.1-5. ⟨10.3389/fcimb.2012.00027⟩ Article dans une revue hal-01267787v1
Identifying discriminative classification-based motifs in biological sequences Celine Vens,Marie-Noelle Rosso,Etienne Danchin Bioinformatics, 2011, 27 (9), pp.1231-1238. ⟨10.1093/bioinformatics/btr110⟩ Article dans une revue hal-02652585v1
Identification of plant-parasitism genes in nematodes in silico screening and in vivo validation in Meloidogyne incognita. Mj. Arguel,Amandine Fournier,L. Perfus-Barbeoch,Eg. Danchin,Mn. Rossoet al. Communications in Agricultural and Applied Biological Sciences, 2011, 76 (3), pp.409-412 Article dans une revue hal-02303156v1
Data-mining of the Meloidogyne incognita degradome and comparative analysis of proteases in nematodes Philippe Castagnone-Sereno,Emeline Deleury,Etienne Danchin,Laetitia Perfus-Barbeoch,Pierre Abad Genomics, 2011, 97 (1), pp.29-36. ⟨10.1016/j.ygeno.2010.10.002⟩ Article dans une revue hal-02644216v1
An Arabidopsis (malectin-like) leucine-rich repeat receptor-like kinase contributes to downy mildew disease Sophie Hok,Etienne Danchin,Valerie Allasia,Franck Panabières,Agnès Attardet al. Plant, Cell and Environment, 2011, 34 (11), pp.1944-1957. ⟨10.1111/j.1365-3040.2011.02390.x⟩ Article dans une revue hal-02650905v1
Horizontal gene transfer in nematodes: a catalyst for plant parasitism Annelies Haegeman,John T. Jones,Etienne Danchin Molecular Plant-Microbe Interactions, 2011, 24 (8), pp.879-887. ⟨10.1094/MPMI-03-11-0055⟩ Article dans une revue hal-02652678v1
Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea Joelle J. Amselem,Christina A. Cuomo,Jan A. L. van Kan,Muriel Viaud,Ernesto P. Benitoet al. PLoS Genetics, 2011, 7 (8), ⟨10.1371/journal.pgen.1002230⟩ Article dans une revue hal-01190236v1
The plant apoplasm is an important recipient compartment for nematode secreted proteins Paulo Vieira,Etienne Danchin,Cédric Neveu,Carine Crozat,Stéphanie Jaubertet al. Journal of Experimental Botany, 2011, 62 (3), pp.1241-1253. ⟨10.1093/jxb/erq352⟩ Article dans une revue hal-02644552v1
What nematode genomes tell us about the importance of horizontal gene transfers in the evolutionary history of animals Etienne Danchin Mobile Genetic Elements, 2011, 1 (4), pp.1-5 Article dans une revue hal-02641806v1
Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes Etienne Danchin,Marie-Noelle Rosso,Paulo Vieira,Janice de Almeida-Engler,Pedro M Coutinhoet al. Proceedings of the National Academy of Sciences of the United States of America, 2010, 107 (41), pp.17651-17656 Article dans une revue hal-02669078v1
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium Li-Jun Ma,Charlotte van Der Does,Katherine A. Borkovich,Jeffrey J. Coleman,Marie-José Daboussiet al. Nature, 2010, 464 (7287), pp.367-373. ⟨10.1038/nature08850⟩ Article dans une revue hal-02662964v1
A Medicago truncatula NADPH oxidase is involved in symbiotic nodule functioning Daniel Marino,Emilie Andrio,Etienne Danchin,Elodie Oger,Sebastien Gucciardoet al. New Phytologist, 2010, 189 (2), pp.580-592. ⟨10.1111/j.1469-8137.2010.03509.x⟩ Article dans une revue hal-02665315v1
Genome-wide survey and analysis of microsatellites in nematodes, with a focus on the plant-parasitic species Meloidogyne incognita Philippe Castagnone-Sereno,Etienne Danchin,Emeline Deleury,Thomas Guillemaud,Thibaut Malausaet al. BMC Genomics, 2010, 11, pp.598. ⟨10.1186/1471-2164-11-598⟩ Article dans une revue hal-02663550v1
The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion Jeffrey J. Coleman,Steve D. Rounsley,Marianela Rodriguez-Carres,Alan Kuo,Catherine C. Wasmannet al. PLoS Genetics, 2009, 5 (8), pp.e1000618 Article dans une revue hal-02664932v1
CASSIOPE: an expert system for conserved regions searches Virginie Lopez Rascol,Anthony Levasseur,Olivier Chabrol,Simona Grusea,Philippe Gouretet al. BMC Bioinformatics, 2009, 10, pp.284 Article dans une revue hal-02661323v1
The genomes of root-knot nematodes David Mck Bird,Valerie M. Williamson,Pierre Abad,James Mccarter,Etienne Danchinet al. Annual Review of Phytopathology, 2009, 47, pp.333-351. ⟨10.1146/annurev-phyto-080508-081839⟩ Article dans une revue hal-02662834v1
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita Pierre Abad,Jerome Gouzy,Jean-Marc Aury,Philippe Castagnone-Sereno,Etienne Danchinet al. Nature Biotechnology, 2008, 26 (8), pp.909-915. ⟨10.1038/nbt.1482⟩ Article dans une revue hal-01189285v1
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis F. Martin,A. Aerts,D. Ahrén,A. Brun,E. G. J. Danchinet al. Nature, 2008, 452 (7183), pp.88-93. ⟨10.1038/nature06556⟩ Article dans une revue halsde-00261893v1
Evolution of major histocompatibility complex by &quot;en bloc&quot; duplication before mammalian radiation Elodie Darbo,Etienne Danchin,Michael Mcdermott,Pierre Pontarotti Immunogenetics, 2008, 60 (8), pp.423-438. ⟨10.1007/s00251-008-0301-7⟩ Article dans une revue istex hal-02664403v1
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina) Diego Martínez,Randy Berka,Bernard Henrissat,Markku Saloheimo,Mikko Arvaset al. Nature Biotechnology, 2008, 26, pp.553-560. ⟨10.1038/nbt1403⟩ Article dans une revue hal-02669177v1
The genome sequence of the model ascomycete fungus Podospora anserina. Eric Espagne,Olivier Lespinet,Fabienne Malagnac,Corinne da Silva,Olivier Jaillonet al. Genome Biology, 2008, 9 (5), pp.R77. ⟨10.1186/gb-2008-9-5-r77⟩ Article dans une revue hal-00286300v1
Conceptual bases for quantifying the role of the environment on gene evolution: the participation of positive selection and neutral evolution Anthony Levasseur,Ludovic Orlando,Xavier Bailly,Michel C. Milinkovitch,Etienne Danchinet al. Biological Reviews, 2007, 82 (4), pp.551-572. ⟨10.1111/j.1469-185X.2007.00024.x⟩ Article dans une revue istex hal-02668139v1
Where do animal alpha-amylases come from? An interkingdom trip. J.-L. da Lage,E.G.J. Danchin,D. Casane FEBS Letters, 2007, 581, pp.3927-3935 Article dans une revue hal-00161062v1
Biotechnological applications and potential of fungal feruloyl esterases based on prevalence, classification and biochemical diversity Isabelle Benoit,Etienne Danchin,Robert-Jan Bleichrodt,Ronald de Vries Biotechnology Letters, 2007, 30 (3), pp.387-396. ⟨10.1007/s10529-007-9564-6⟩ Article dans une revue istex hal-02656772v1
The use of evolutionary biology concepts for genome annotation Etienne Danchin,Anthony Levasseur,Virginie Lopez Rascol,Philippe Gouret,Pierre Pontarotti Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 2007, 308B (1), pp.26-36. ⟨10.1002/jez.b.21131⟩ Article dans une revue istex hal-02658043v1
Where do animal alpha-amylases come from Jean-Luc da Lage,Etienne Danchin,Didier Casane FEBS Letters, 2007, 581 (21), pp.3927-3935. ⟨10.1016/j.febslet.2007.07.019⟩ Article dans une revue hal-02663351v1
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88 Herman Pel,Johannes de Winde,David Archer,Paul Dyer,Gerald Hofmannet al. Nature Biotechnology, 2007, 25 (2), pp.221-231. ⟨10.1038/nbt1282⟩ Article dans une revue (article de synthèse) hal-02668442v1
Eleven ancestral gene families lost in mammals and vertebrates while otherwise universally conserved in animals Etienne Danchin,Philippe Gouret,Pierre Pontarotti BMC Evolutionary Biology, 2006, 6 (5), 10 p. ⟨10.1186/1471-2148-6-5⟩ Article dans une revue hal-02668451v1
Des champignons qui carburent: de l'étude du génome à la production industrielle Marcel M. Asther,Eric Record,Isabelle Gimbert,Jean-Claude Sigoillot,Anthony Levasseuret al. Biofutur, 2006, 269, pp.28-32 Article dans une revue hal-02664475v1
Dividing the large glycoside hydrolase family 13 into subfamilies: towards improved functional annotations of alpha-amylase-related proteins Mark R. Stam,Etienne Danchin,Corinne Rancurel,Pedro M Coutinho,Bernard Henrissat Protein Engineering, Design and Selection, 2006, 19 (12), pp.555-562. ⟨10.1093/protein/gzl044⟩ Article dans une revue hal-02668771v1
A rigorous method for multigenic families' functional annotation: the peptidyl arginine deiminase (PADs) proteins family example. Nathalie Balandraud,Philippe Gouret,Etienne G. J. Danchin,M Blanc,D Zinnet al. BMC Genomics, 2005, 6, pp.153. ⟨10.1186/1471-2164-6-153⟩ Article dans une revue inserm-00091307v1
FIGENIX: intelligent automation of genomic annotation: expertise integration in a new software platform Philippe Gouret,Vérane Vitiello,Nathalie Balandraud,André Gilles,Pierre Pontarottiet al. BMC Bioinformatics, 2005, 6, 21 p. ⟨10.1186/1471-2105-6-198⟩ Article dans une revue hal-02681213v1
Statistical evidence for a more than 800-million-year-old evolutionarily conserved genomic region in our genome Etienne Danchin,Pierre Pontarotti Journal of Molecular Evolution, 2004, 59 (5), pp.587-597. ⟨10.1007/s00239-004-2648-1⟩ Article dans une revue istex hal-02677409v1
High similarity between flanking regions of different microsatellites detected within each of two species of Lepidoptera Emese Meglécz,Frederic Petenian,Etienne Danchin,Armelle Coeur d'Acier,Jean-Yves Raspluset al. Molecular Ecology, 2004, 13 (6), pp.1693-1700. ⟨10.1111/j.1365-294X.2004.02163.x⟩ Article dans une revue istex hal-02678374v1
The major histocompatibility complex origin Etienne Danchin,Vérane Vitiello,Alexandre Vienne,Olivier Richard,Philippe Gouretet al. Immunological Reviews, 2004, 198, pp.216-232 Article dans une revue hal-02682552v1
Towards the reconstruction of the bilaterian ancestral pre-MHC region Etienne Danchin,Pierre Pontarotti Trends in Genetics, 2004, 20 (12), pp.587-591. ⟨10.1016/j.tig.2004.09.009⟩ Article dans une revue istex hal-02677408v1
Evolution of the proto-MHC ancestral region Alexandre Vienne,Takashi Shiina,Laurent Abi-Rached,Etienne Danchin,Vérane Vitielloet al. Immunogenetics, 2003, 55 (7), pp.429-436. ⟨10.1007/s00251-003-0601-x⟩ Article dans une revue istex hal-02683166v1
Conservation of the MHC-like region throughout evolution Etienne Danchin,Laurent Abi-Rached,André Gilles,Pierre Pontarotti Immunogenetics, 2003, 55 (3), pp.141-148. ⟨10.1007/s00251-003-0562-0⟩ Article dans une revue istex hal-02681710v1

Communication dans un congrès (5)

Genome assembly and structural variations across geographical isolates of Meloidogyne enterolobii Marine Poullet,Etienne Danchin,Corinne Rancurel,Marine Sallaberry,Céline Lopez-Roqueset al. Environmental and Agronomical Genomics Symposium - EAGS 2024, France Génomique; GDR Génomique environnementale, Feb 2024, Toulouse, France Communication dans un congrès hal-04715094v1
The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals in-sights into the bases of parasitism and virulence S. Eves-van den Akker,D. R. Laetsch,P. Thorpe,C. J. Lilley,Etienne Danchinet al. Joint Meeting of the Society of Nematologists and the Organization of Nematologists of Tropical America (ONTA), 2016, Jul 2016, Montréal, Canada. 387 p Communication dans un congrès hal-01604220v1
Comparative genomics/transcriptomics to study effector gene birth in plant-parasitic nematodes S. Eves-van den Akker,C. J. Lilley,Etienne Danchin,Corinne Rancurel,P. J. A. Cocket al. Society of Nematologists Annual Meeting 2014, Society of Nematologists. Marceline, Missouri, USA., 2015, Marceline, United States. 1 p Communication dans un congrès hal-02741588v1
Investigating the acetylcholine receptor diversity and specificity in parasitic nematodes Cédric Neveu,Elise Courtot,Robin N. Beech,Abdallah Harmache,Jacques J. Cortetet al. NemaTours : Bringing worms together, Le Studium - Loire Valley Institute for Advanced Studies. FRA., Jul 2014, Tours, France Communication dans un congrès hal-02741506v1
Les récepteurs nicotiniques des nématodes parasites : cibles pharmacologiques pour le developpement de nouveaux anthelminthiques Elise Courtot,Claude Charvet,Nicolas Peineau,Etienne Danchin,Philippe Castagnone-Serenoet al. Journées d'Animation Scientifique du Département Santé Animale, Institut National de Recherche Agronomique (INRA). UAR Département Santé Animale (0564)., Oct 2013, Cap d'Agde, France. 104 p Communication dans un congrès hal-02748100v1

Poster de conférence (8)

Enhancing Microbial Genome Reconstruction in Complex Environments by combining Short-and Long-read Sequencing Carole Belliardo,Arthur Péré,Alain Franc,Jean-Marc Frigerio,Nicolas Mauriceet al. 2025 - Journées scientifiques Agroécologie et Numérique, Jan 2025, Dijon, France. , pp.1-1, 2025 Poster de conférence hal-04920790v1
Exploring and quantifying the soil genetic diversity captured by long and short-read shotgun metagenomic sequencing Carole Belliardo,Samuel Mondy,Arthur Pere,Claire Lemaitre,Riccardo Vicedominiet al. Journées 2024 du programme Agroécologie et Numérique, Jan 2024, Rennes, France. , pp.1-1, 2024 Poster de conférence hal-04423917v1
Orphan genes: Their identification and evolution in plant-parasitic nematodes Ercan Seçkin,Dominique Colinet,Marc Bailly-Bechet,Edoardo Sarti,Etienne Danchin JOBIM 2024 - Journées ouvertes en biologie, informatique, et mathématiques 2024, Jun 2024, Toulouse, France Poster de conférence hal-04615706v2
Unlocking the Soil Microbiome: Unraveling Soil Microbial Complexity Using Long-Read Metagenomics Carole Belliardo,Nicolas Maurice,Clémence Frioux,Claire Lemaitre,Riccardo Vicedominiet al. EAGS 2024 - The International Environmental and Agronomical Genomics symposium, Feb 2024, Toulouse, France. , pp.1-1, 2024 Poster de conférence hal-04509213v1
High-quality genome assembly to identify structural variations in a new quarantine plant parasitic nematode Meloidogyne enterolobii Marine Poullet,Hemanth Gopal,Corinne Rancurel,Marine Sallaberry,Celine Lopez-Roqueset al. SMBE23, Jul 2023, Ferrara, Italy. Poster de conférence hal-04714985v1
Comparison of the PacBio 2.0 and 3.0 kits for full length mRNA sequencing in multiplex Marine Sallaberry,Eden Darnige,Lucien Hoffbeck,Sandra Fourre,Mathis Pochonet al. Assemblée Générale France Génomique, Jun 2023, Paris, France Poster de conférence hal-04150252v1
Isolation of candidates effectors secreted by the fungal pathogen Fusarium graminearum in the early stages of FHB disease on wheat. Philippe Lecomte,Christelle El Hajj Assaf,Martine da Rocha,Cherif Chetouhi,Olivier Soudièreet al. Effectome Network, Sep 2013, Lauret, France. 2013 Poster de conférence hal-02750292v1
Identification of effectors secreted by the fungal pathogen Fusarium graminearum, main causal agent of FHB on wheat Philippe Lecomte,Christelle El Hajj Assaf,Martine da Rocha,Cherif Chetouhi,Etienne Danchinet al. Plant Resistance Sustainability 2012 International Conference, Oct 2012, la colle sur loup, France. , 2012, International Conference on Plant Resistance Sustainability 2012 Poster de conférence hal-02749942v1

Chapitre d'ouvrage (5)

Genomic perspectives on the long-term absence of sexual reproduction in animals Etienne Danchin,Jean-François Flot,Laetitia Perfus-Barbeoch,Karine van Doninck Evolutionary biology – Concepts, biodiversity, macroevolution and genome evolution, Springer-Verlag, 345 p., 2011, 978-3-642-20762-4. ⟨10.1007/978-3-642-20763-1_13⟩ Chapitre d'ouvrage hal-02809907v1
The Genome Sequence of Meloidogyne incognita Unveils Mechanisms of Adaptation to Plant-Parasitism in Metazoa Etienne Danchin,Laetitia Perfus-Barbeoch Evolutionary Biology, Concept, Modeling, and Application, Editions Springer, pp.287-302, 2009, 978-3-642-00951-8. ⟨10.1007/978-3-642-00952-5_17⟩ Chapitre d'ouvrage hal-02821446v1
Carbohydrate-Active Enzymes Database: Principles and Classification of Glycosyltransferases Etienne Danchin,Corinne Rancurel Bioinformatics for Glycobiology and Glycomics : An Introduction, John Wiley and Sons, 2009, 9780470016671. ⟨10.1002/9780470029619.ch5⟩ Chapitre d'ouvrage hal-02816858v1
Computational reconstruction of ancestral genomic regions from evolutionarily conserved gene clusters Etienne Danchin,Pierre Pontarotti,Eric A. Gaucher Ancestral Sequence Reconstruction, Oxford University Press, 272 p., 2007, 978-0199545575 Chapitre d'ouvrage hal-02820457v1
Computational reconstruction of ancestral genomic regions from evolutionarily conserved gene clusters Etienne G. J. Danchin,Eric A. Gaucher,Pierre Pontarotti Ancestral Sequence Reconstruction, oxford university press, pp.252, 2007, 9780199299188 Chapitre d'ouvrage hal-00827430v1

Brevet (1)

Method for reducing the plant-parasitic nematode infestation level in a plant Etienne Danchin,Pierre Abad,Laetitia Perfus Barbeoch Patent n° : EP2845902 A1. 2013 Brevet hal-02792876v1

Pré-publication, Document de travail (6)

Genomic rearrangements promote diversification of a facultative meiotic parthenogenetic nematode pest ( Meloidogyne graminicola ) Ngan Phan Thi,Etienne G.J. Danchin,Georgios Koutsovoulos,Corinne Rancurel,Marie-Liesse Vermeireet al. 2025 Pré-publication, Document de travail hal-05343105v1
Identification, evolutionary history and characteristics of orphan genes in root-knot nematodes Ercan Seçkin,Dominique Colinet,Marc Bailly-Bechet,Aurélie Seassau,Silvia Bottiniet al. 2026 Pré-publication, Document de travail hal-05438858v1
Accurate MAG reconstruction from complex soil microbiome through combined short- and HiFi long-reads metagenomics Carole Belliardo,Nicolas Maurice,Arthur Pere,Samuel Mondy,Alain Francet al. 2025 Pré-publication, Document de travail hal-05340126v1
High-fidelity annotated genome of the polyploid and quarantine root-knot nematode, Meloidogyne enterolobii Marine Poullet,Hemanth Gopal,Corinne Rancurel,Marine Sallaberry,Celine Lopez-Roqueset al. 2024 Pré-publication, Document de travail hal-04701569v1
Chromatin structure changes in Daphnia populations upon exposure to environmental cues – or – The discovery of Wolterecks “Matrix” Ronaldo de Carvalho Augusto,Aki Minoda,Olivier REY,Céline Cosseau,Cristian Chaparroet al. 2020 Pré-publication, Document de travail hal-02991174v1
The polyploid genome of the mitotic parthenogenetic root-knot nematode &lt;em&gt;Meloidogyne enterolobii&lt;/em&gt; Georgios Koutsovoulos,Marine Poullet,Abdelnaser El Ashry,Djampa Kozlowski,Erika Salletet al. 2019 Pré-publication, Document de travail (preprint/prepublication) hal-02788762v1

HDR (1)

Genome evolution and adaptations to plant parasitism in nematodes Etienne Danchin Life Sciences [q-bio]. Université Nice Sophia Antipolis, 2014 HDR tel-02801776v1