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Daniel Jacob

I am responsible for the design and/or adaptation of (bio)informatics tools facilitating the capture, storage and use of experimental data in the field of metabolomics and associated metadata. I am also responsible, through scientific monitoring of the field, for the development and/or adaptation of data processing methods (data processing & data mining), for the development and/or deployment of solutions allowing the exploration (data explorer), visualization (data visualization) and data accessibility (open data, FAIR).
47%
Libre accès
15
Documents
Affiliations actuelles
  • 1002364
  • 1157882
  • 1091002
Identifiants chercheurs

Présentation

Domaines de recherche


Compétences

Data mining Data management

Publications

pascal-sirand-pugnet
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Complete Genome Sequence of Mycoplasma putrefaciens Strain 9231, One of the Agents of Contagious Agalactia in Goats

Virginie Dupuy , Pascal Sirand-Pugnet , Eric Baranowski , Aurélien Barré , Marc Breton
Genome Announcements, 2013, 1 (3), pp.e00354-13. ⟨10.1128/genomeA.00354-13⟩
Article dans une revue hal-00907450v1
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Draft Genome Sequences of Mycoplasma alkalescens, Mycoplasma arginini, and Mycoplasma bovigenitalium, Three Species with Equivocal Pathogenic Status for Cattle

Lucía Manso-Silván , Florence Tardy , Eric Baranowski , Aurélien Barré , Alain Blanchard
Genome Announcements, 2013, 1 (3), pp.e00348-13. ⟨10.1128/genomeA.00348-13⟩
Article dans une revue hal-00907454v1
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Draft Genome Sequences of Mycoplasma auris and Mycoplasma yeatsii, Two Species of the Ear Canal of Caprinae

Emilie Dordet-Frisoni , Eric Baranowski , Aurélien Barré , Alain Blanchard , Marc Breton
Genome Announcements, 2013, 1 (3), pp.e00280-13. ⟨10.1128/genomeA.00280-13⟩
Article dans une revue hal-00907449v1
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Mycoplasma mycoides, from "mycoides Small Colony" to "capri". A microevolutionary perspective

François Thiaucourt , Lucía Manso-Silván , Woubit Salah , Valérie Barbe , Benoit Vacherie
BMC Genomics, 2011, 12, pp.114 : 1-19. ⟨10.1186/1471-2164-12-114⟩
Article dans une revue hal-02643828v1
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Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity

Laurent X. Nouvel , Pascal Sirand-Pugnet , Marc S. Marenda , Valérie Barbe , Sophie Mangenot
BMC Genomics, 2010, 11, pp.86. ⟨10.1186/1471-2164-11-86⟩
Article dans une revue hal-02660112v1
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Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas.

Sabine Pereyre , Pascal Sirand-Pugnet , Laure Beven , Alain Charron , Hélène Renaudin
PLoS Genetics, 2009, 5 (10), pp.e1000677. ⟨10.1371/journal.pgen.1000677⟩
Article dans une revue hal-00645937v1
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Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome

Pascal P. Sirand-Pugnet , Carole Lartigue Prat , Marc Marenda , Daniel Jacob , Aurélien Barré
PLoS Genetics, 2007, 3 (5), pp.e75. ⟨10.1371/journal.pgen.0030075⟩
Article dans une revue hal-02663589v1

The genome sequence of Mycoplasma hominis and comparison with the minimal bacterial genomes of the human pathogens, M. genitalium and Ureaplasma parvum

Sabine Pereyre , Pascal P. Sirand-Pugnet , A. Barre , A. Charron , P. Avenaud
108. General meeting of the American Society for Microbiology, Jun 2008, Boston, United States
Communication dans un congrès hal-02752888v1

Small but dynamic genomes: evidences for massive horizontal gene transfer between ruminant pathogenic mycoplasmas

Pascal P. Sirand-Pugnet , Marc Marenda , Daniel Jacob , Aurélien Barré , Valérie Barbe
Genomes 2008, Apr 2008, Paris, France
Communication dans un congrès hal-02751198v1

Evolution des génomes de mollicutes : une histoire pleine de rebondissements

Pascal P. Sirand-Pugnet , Christine Citti , A Barre , D Jacob , Alain A. Blanchard
7e Rencontre Francophone de Mycoplasmologie, 2007, Lyon, France. pp.Inconnu
Communication dans un congrès hal-02813016v1

Evolution des génomes de mollicutes : une histoire pleine de rebondissements

Pascal P. Sirand-Pugnet , Christine Citti , Aurélien Barré , Daniel Jacob , Alain A. Blanchard
7. Rencontre francophone de mycoplasmologie, Jul 2007, Lyon, France
Communication dans un congrès hal-02755457v1

Mycoplasma agalactiae genome: evidence for massive horizontal gene transfer between pathogenic, ruminant mycoplasmas

Pascal P. Sirand-Pugnet , Marc Marenda , Carole Lartigue Prat , Daniel Jacob , Valérie Barbe
16. International congress of the International Organization for Mycoplasmology, Jul 2006, Cambridge, United Kingdom
Communication dans un congrès hal-02752179v1

The complete genome sequence of the human urogenital mycoplasma, Mycoplasma hominis

Sabine Pereyre , Philippe Avenaud , Alain Charron , Pascal P. Sirand-Pugnet , Daniel Jacob
16. International congress of the International Organization for Mycoplasmology, Jul 2006, Cambridge, United Kingdom
Communication dans un congrès hal-02756026v1

Mycoplasma agalactiae Genome: Evidence for Massive Horizontal Gene Transfer Between Pathogenic, Ruminant Mycoplasmas

Pascal P. Sirand-Pugnet , M Marenda , C Lartigue , D Jacob , V Barbe
16th IOM Congress, 2006, Cambridge, United Kingdom. pp.Inconnu, 2006
Poster de conférence hal-02814501v1

Mycoplasma agalactiae genome: evidence for massive horizontal gene transfer between pathogenic, ruminant mycoplasmas

Pascal P. Sirand-Pugnet , M Marenda , C Lartigue , D Jacob , V Barbe
16th International Congress of the International Organization for Mycoplasmology, 2006, Cambridge, United Kingdom. pp.Inconnu, 2006
Poster de conférence hal-02815535v1