Daniel Muller associate professor Université Claude Bernard Lyon1

Identifiants chercheurs

IdHAL :

daniel-muller

ORCID :

0000-0002-6619-4691

IdRef :

090311310

ResearcherID :

http://www.researcherid.com/rid/C-6827-2008

Présentation

Publications

Article dans une revue (68)

The capacity to suppress wheat crown rot disease occurs naturally in contrasted farm soils Alix Catry,Simon de Donder,Richard Blanc,Michaël Denefle,Romain Bouquetet al. Rhizosphere, 2026, 38, pp.101320. ⟨10.1016/j.rhisph.2026.101320⟩ Article dans une revue hal-05587477v1
Revival of traditional agricultural systems – A multidisciplinary on‐farm survey of maize‐bean intercropping reveals unexpected competition effects on beans Noa Vazeux-Blumental,Laura Mathieu,Théo Trabac,Carine Palaffre,Bernard Lagardèreet al. Plants, People, Planet, 2025, pp.1-16. ⟨10.1002/ppp3.70049⟩ Article dans une revue hal-05113322v1
Genomic and biological characterization of Streptomyces strains isolated from barley Margaux Cheminat,Loïc Waeckerle,Abdelmalek Alioua,Valérie Cognat,Mathieu Erhardtet al. BMC Microbiology, 2025, 26 (1), pp.25. ⟨10.1186/s12866-025-04493-4⟩ Article dans une revue hal-05493195v1
Manure amendments and fungistasis, and relation with protection of wheat from Fusarium graminearum Irena Todorović,Danis Abrouk,Nicolas Fierling,Martina Kyselková,Marie-Lara Bouffaudet al. Applied Soil Ecology, 2024, 201, pp.105506. ⟨10.1016/j.apsoil.2024.105506⟩ Article dans une revue hal-04654296v1
Natural plant disease suppressiveness in soils extends to insect pest control Nadine Harmsen,Pilar Vesga,Gaétan Glauser,Françoise Klötzli,Clara Heimanet al. Microbiome, 2024, 12 (1), pp.127. ⟨10.1186/s40168-024-01841-w⟩ Article dans une revue hal-04654265v1
D genome acquisition and breeding have had a significant impact on interaction of wheat with ACC deaminase producers in soil or ACC deaminase potential activity in the rhizosphere Cécile Gruet,Danis Abrouk,Andreas Börner,Daniel Muller,Yvan Moënne-Loccoz Soil Biology and Biochemistry, 2024, 193, pp.109392. ⟨10.1016/j.soilbio.2024.109392⟩ Article dans une revue insu-04658828v1
Microbial diversity in soils suppressive to Fusarium diseases Irena Todorović,Yvan Moënne-Loccoz,Vera Raic,Jelena Jovičić-Petrović,Daniel Muller Frontiers in Plant Science, 2023, 14, pp.1228749. ⟨10.3389/fpls.2023.1228749⟩ Article dans une revue (article de synthèse) hal-04320379v1
Wheat genome architecture influences interactions with phytobeneficial microbial functional groups in the rhizosphere Cécile Gruet,Danis Abrouk,Andreas Börner,Daniel Muller,Yvan Moënne-Loccoz Plant, Cell and Environment, 2023, 46 (3), pp.1018-1032. ⟨10.1111/pce.14508⟩ Article dans une revue hal-04317066v1
Genomic content of wheat has a higher influence than plant domestication status on the ability to interact with Pseudomonas plant growth‐promoting rhizobacteria Cécile Gruet,Maroua Alaoui,Florence Gerin,Claire Prigent-Combaret,Andreas Börneret al. Plant, Cell and Environment, 2023, 46 (12), pp.3933-3948. ⟨10.1111/pce.14698⟩ Article dans une revue hal-04245524v1
A metagenomic lens into endosphere microbial communities, promises, and discoveries Bartholomew Saanu Adeleke,Daniel Muller,Olubukola Oluranti Babalola Letters in Applied Microbiology, 2023, 76 (2), ⟨10.1093/lambio/ovac030⟩ Article dans une revue (article de synthèse) hal-04244433v1
Two novel species isolated from wheat rhizospheres in Serbia: Pseudomonas serbica sp. nov. and Pseudomonas serboccidentalis sp. nov. Irena Todorović,Danis Abrouk,Martina Kyselková,Céline Lavire,Marjolaine Reyet al. Systematic and Applied Microbiology, 2023, 46 (4), pp.126425. ⟨10.1016/j.syapm.2023.126425⟩ Article dans une revue hal-04244409v1
Rhizophere analysis of auxin producers harboring the phenylpyruvate decarboxylase pathway Cécile Gruet,Andréa Oudot,Danis Abrouk,Yvan Moënne-Loccoz,Daniel Muller Applied Soil Ecology, 2022, 173, pp.104363. ⟨10.1016/j.apsoil.2021.104363⟩ Article dans une revue hal-03533870v1
Field Site-Specific Effects of an Azospirillum Seed Inoculant on Key Microbial Functional Groups in the Rhizosphere Sébastien Renoud,Jordan Vacheron,Danis Abrouk,Claire Prigent Combaret,Laurent Legendreet al. Frontiers in Microbiology, 2022, 12, pp.760512. ⟨10.3389/fmicb.2021.760512⟩ Article dans une revue hal-03763575v1
Significance of the Diversification of Wheat Species for the Assembly and Functioning of the Root-Associated Microbiome Cécile Gruet,Daniel Muller,Yvan Moënne-Loccoz Frontiers in Microbiology, 2022, 12, pp.782135. ⟨10.3389/fmicb.2021.782135⟩ Article dans une revue (article de synthèse) hal-03514878v1
Effect of Inoculation Level on the Impact of the PGPR Azospirillum lipoferum CRT1 on Selected Microbial Functional Groups in the Rhizosphere of Field Maize Sébastien Renoud,Danis Abrouk,Claire Prigent Combaret,Florence Wisniewski-Dyé,Laurent Legendreet al. Microorganisms, 2022, 10 (2), pp.325. ⟨10.3390/microorganisms10020325⟩ Article dans une revue hal-03579580v1
Experimental Evolution in Plant-Microbe Systems: A Tool for Deciphering the Functioning and Evolution of Plant-Associated Microbial Communities Beatriz Manriquez,Daniel Muller,Claire Prigent-Combaret,Claire Prigent Combaret Frontiers in Microbiology, 2021, 12, ⟨10.3389/fmicb.2021.619122⟩ Article dans une revue (article de synthèse) hal-03300724v1
Vaginal Tampon Colonization by Staphylococcus aureus in Healthy Women Myriam Chiaruzzi,Alexia Barbry,Anaëlle Muggeo,Anne Tristan,Isaline Jacquemondet al. Applied and Environmental Microbiology, 2020, 86 (18), pp.e01249-20. ⟨10.1128/AEM.01249-20⟩ Article dans une revue hal-02989503v2
Secondary metabolites from plant‐associated Pseudomonas are overproduced in biofilm Laura Rieusset,Marjolaine Rey,Daniel Muller,Jordan Vacheron,Florence Gerinet al. Microbial Biotechnology, 2020, 13 (5), pp.1562-1580. ⟨10.1111/1751-7915.13598⟩ Article dans une revue hal-03000801v1
Author Correction: Complex ecological interactions of Staphylococcus aureus in tampons during menstruation Isaline Jacquemond,Anaëlle Muggeo,Gery Lamblin,Anne Tristan,Yves Gilletet al. Scientific Reports, 2020, 10 (1), pp.1848. ⟨10.1038/s41598-020-57947-2⟩ Article dans une revue hal-04814687v1
Co-occurrence of rhizobacteria with nitrogen fixation and/or 1-aminocyclopropane-1-carboxylate deamination abilities in the maize rhizosphere Sébastien Renoud,Marie-Lara Bouffaud,Audrey Dubost,Claire Prigent-Combaret,Laurent Legendreet al. FEMS Microbiology Ecology, 2020, 96 (5), ⟨10.1093/femsec/fiaa062⟩ Article dans une revue hal-02547931v1
Genomic, phylogenetic and catabolic re-assessment of the Pseudomonas putida clade supports the delineation of Pseudomonas alloputida sp. nov., Pseudomonas inefficax sp. nov., Pseudomonas persica sp. nov., and Pseudomonas shirazica sp. nov Vahid Keshavarz-Tohid,Jordan Vacheron,Audrey Dubost,Claire Prigent-Combaret,Parissa Taheriet al. Systematic and Applied Microbiology, 2019, 42 (4), pp.468-480. ⟨10.1016/j.syapm.2019.04.004⟩ Article dans une revue hal-02392254v1
Draft genome sequence of plant growth-promoting bacillus altitudinis strain pae4 Nahed Abdel Ghaffar Abdel Aziz Ibrahim,Mohamed Nabil Abdel Mageed Omar,Ghada A. Abu El Heba,Yvan Moenne-Loccoz,Claire Prigent Combaretet al. Microbiology Resource Announcements, 2018, 7 (13), pp.1-2. ⟨10.1128/MRA.00962-18⟩ Article dans une revue hal-02159605v1
1-Aminocyclopropane-1-carboxylate deaminase producers associated to maize and other Poaceae species Marie-Lara Bouffaud,Sébastien Renoud,Audrey Dubost,Yvan Moënne-Loccoz,Daniel Muller Microbiome, 2018, 6 (1), ⟨10.1186/s40168-018-0503-7⟩ Article dans une revue hal-02148378v1
Impact of currently marketed tampons and menstrual cups on Staphylococcus aureus growth and TSST-1 production in vitro Louis Nonfoux,Myriam Chiaruzzi,Cédric Badiou,Jessica Baude,Anne Tristanet al. Applied and Environmental Microbiology, 2018, 84 (12), ⟨10.1128/AEM.00351-18⟩ Article dans une revue hal-01911407v1
Complex ecological interactions of Staphylococcus aureus in tampons during menstruation Isaline Jacquemond,Anaëlle Muggeo,Gery Lamblin,Anne Tristan,Yves Gilletet al. Scientific Reports, 2018, 8 (1), pp.9942. ⟨10.1038/s41598-018-28116-3⟩ Article dans une revue hal-01910908v1
Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium Florent Lassalle,Rémi Planel,Simon Penel,David Chapulliot,Valérie Barbeet al. Genome Biology and Evolution, 2017, 9 (12), pp.3413 - 3431. ⟨10.1093/gbe/evx255⟩ Article dans une revue hal-01913841v1
Distribution of 2,4-diacetylphloroglucinol biosynthetic genes among the pseudomonas spp. reveals unexpected polyphyletism Juliana Almario,Maxime Bruto,Jordan Vacheron,Claire Prigent-Combaret,Yvan Moenne-Loccozet al. Frontiers in Microbiology, 2017, 8, ⟨10.3389/fmicb.2017.01218⟩ Article dans une revue hal-01608669v1
Phylogenetic diversity and antagonistic traits of root and rhizosphere pseudomonads of bean from Iran for controlling Rhizoctonia solani Vahid Keshavarz-Tohid,Parissa Taheri,Daniel Muller,Claire Prigent-Combaret,Jordan Vacheronet al. Research in Microbiology, 2017, 168 (8), pp.760-772. ⟨10.1016/j.resmic.2017.08.002⟩ Article dans une revue hal-02487202v1
Differential contribution of plant-beneficial functions from Pseudomonas kilonensis F113 to root system architecture alterations in Arabidopsis thaliana and Zea mays Jordan Vacheron,Guilhem Desbrosses,Sébastien Renoud,Rosa-Maria Padilla-Aguilar,Vincent Walkeret al. Molecular Plant-Microbe Interactions, 2017, 31 (2), ⟨10.1094/MPMI-07-17-0185-R⟩ Article dans une revue hal-01613633v1
Let the core microbiota be functional Philippe P. Lemanceau,Manuel Blouin,Daniel Muller,Yvan Moenne-Loccoz Trends in Plant Science, 2017, 22 (7), pp.583-595. ⟨10.1016/j.tplants.2017.04.008⟩ Article dans une revue hal-01608595v1
Draft Genome Sequence of Chryseobacterium sp. JV274 Isolated from Maize Rhizosphere Jordan Vacheron,Audrey Dubost,David Chapulliot,Claire Prigent-Combaret,Daniel Muller Genome Announcements, 2017, 5 (15), pp.e00122-17. ⟨10.1128/genomeA.00122-17⟩ Article dans une revue hal-02487196v1
Is plant evolutionary history impacting recruitment of diazotrophs and nifH expression in the rhizosphere? Marie-Lara Bouffaud,Sebastien Renoud,Yvan Moënne-Loccoz,Daniel Muller Scientific Reports, 2016, 6, pp.21690. ⟨10.1038/srep21690⟩ Article dans une revue hal-02466010v1
Fluorescent Pseudomonas Strains with only Few Plant-Beneficial Properties Are Favored in the Maize Rhizosphere Jordan Vacheron,Yvan Moënne-Loccoz,Audrey Dubost,Maximilien Gonçalves-Martins,Daniel Mulleret al. Plant Biotic Interactions, 2016, 7, pp.1212. ⟨10.3389/fpls.2016.01212⟩ Article dans une revue hal-02466008v1
Expression on roots and contribution to maize phytostimulation of 1-aminocyclopropane-1-decarboxylate deaminase gene acdS in Pseudomonas fluorescens F113 Jordan Vacheron,Emeline Combes-Meynet,Vincent Walker,B. Gouesnard,Daniel Mulleret al. Plant and Soil, 2016, 407 (1-2), pp.187-202. ⟨10.1007/s11104-016-2907-0⟩ Article dans une revue hal-02466011v1
Comparative genomics of environmental and clinical stenotrophomonas maltophiliaStrains with different antibiotic resistance profiles Benjamin Youenou,Sabine Favre-Bonte,Josselin Bodilis,Elisabeth Brothier,Audrey Dubostet al. Genome Biology and Evolution, 2015, 7 (9), pp.2484-2505. ⟨10.1093/gbe/evv161⟩ Article dans une revue hal-01605055v1
Ecological speciation in bacteria: reverse ecology approaches reveal the adaptive part of bacterial cladogenesis Florent Lassalle,Daniel Muller,Xavier Nesme Research in Microbiology, 2015, 166 (10), pp.729-741. ⟨10.1016/j.resmic.2015.06.008⟩ Article dans une revue hal-02547960v1
Single acquisition of protelomerase gave rise to speciation of a large and diverse clade within the Agrobacterium/Rhizobium supercluster characterized by the presence of a linear chromid Martha H. Ramírez-Bahena,Ludovic Vial,Florent Lassalle,Benjamin Diel,David Chapulliotet al. Molecular Phylogenetics and Evolution, 2014, 73, pp.202-207. ⟨10.1016/j.ympev.2014.01.005⟩ Article dans une revue istex hal-01010660v1
Frequent, independent transfers of a catabolic gene from bacteria to contrasted filamentous eukaryotes Maxime Bruto,Claire Prigent-Combaret,P. Luis,Yvan Moënne-Loccoz,Daniel Muller Proceedings of the Royal Society B: Biological Sciences, 2014, 281 (1789), pp.20140848. ⟨10.1098/rspb.2014.0848⟩ Article dans une revue hal-02487460v1
Rhizosphere ecology and phytoprotection in soils naturally suppressive to Thielaviopsis black root rot of tobacco Juliana Almario,Daniel Muller,Geneviève Défago,Yvan Moënne-Loccoz Environmental Microbiology, 2014, pp.1-12. ⟨10.1111/1462-2920.12459⟩ Article dans une revue istex hal-01010573v1
Evaluation of rhizobacterial indicators of tobacco black root rot suppressiveness in farmers' fields Martina Kyselková,Juliana Almario,Jan Kopecký,Markéta Ságová-Marečková,Jacqueline Hauratet al. Environmental Microbiology Reports, 2014, ⟨10.1111/1758-2229.12131⟩ Article dans une revue istex hal-01010640v1
Analysis of genes contributing to plant-beneficial functions in plant growth-promoting rhizobacteria and related Proteobacteria Maxime Bruto,Claire Prigent-Combaret,Daniel Muller,Yvan Moënne-Loccoz Scientific Reports, 2014, 4, pp.6261. ⟨10.1038/srep06261⟩ Article dans une revue hal-02487456v1
Root microbiome relates to plant host evolution in maize and other Poaceae Marie-Lara Bouffaud,Marie-Andrée Poirier,Daniel Muller,Yvan Moënne-Loccoz Environmental Microbiology, 2014, ⟨10.1111/1462-2920.12442⟩ Article dans une revue istex hal-01010591v1
Rhizosphere microbial communities associated with Rhizoctonia damage at the field and disease patch scale Suzanne Donn,Juliana Almario,Daniel Muller,Yvan Moënne-Loccoz,Vadakattu V.S.R. Guptaet al. Applied Soil Ecology, 2014, 78, pp.37-47. ⟨10.1016/j.apsoil.2014.02.001⟩ Article dans une revue istex hal-01010607v1
Unexpected phytostimulatory behavior for Escherichia coli and Agrobacterium tumefaciens model strains. Vincent Walker,Maxime Bruto,Floriant Bellvert,René Bally,Daniel Mulleret al. Molecular Plant-Microbe Interactions, 2013, 26 (5), pp.495-502. ⟨10.1094/MPMI-12-12-0298-R⟩ Article dans une revue hal-00965830v1
Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26. Jérémy Andres,Florence Arsène-Ploetze,Valérie Barbe,Céline Brochier-Armanet,Jessica Cleiss-Arnoldet al. Genome Biology and Evolution, 2013, 5 (5), pp.934-53. ⟨10.1093/gbe/evt061⟩ Article dans une revue hal-00972245v1
Investigating the species and strain diversity of agrobacteria by MLSA: toward a phylogenetically relevant redefinition of the genus Agrobacterium. X. Nesme,D. Costechareyre,M. H. R. Bahena,Daniel Muller,J. Nesmeet al. Frontiers in Plant-Microbe Interaction, 2013 Article dans une revue hal-02522212v1
Effect of Clay Mineralogy on Iron Bioavailability and Rhizosphere Transcription of 2,4-Diacetylphloroglucinol Biosynthetic Genes in Biocontrol Pseudomonas protegens Juliana Almario,Claire Prigent-Combaret,Daniel Muller,Yvan Moënne-Loccoz Molecular Plant-Microbe Interactions, 2013, 26 (5), pp.566-574. ⟨10.1094/MPMI-11-12-0274-R⟩ Article dans une revue hal-02522202v1
Assessment of the relationship between geologic origin of soil, rhizobacterial community composition and soil receptivity to tobacco black root rot in Savoie region (France) Juliana Almario,Martina Kyselková,J. Kopecký,M. Ságová-Marečková,Daniel Mulleret al. Plant and Soil, 2013, pp.1-12. ⟨10.1007/s11104-013-1677-1⟩ Article dans une revue istex hal-02522203v1
Plant growth-promoting rhizobacteria and root system functioning Jordan Vacheron,G. Desbrosses,Marie.-Lara Bouffaud,B. Touraine,Yvan Moënne-Loccozet al. Frontiers in Plant Science, 2013, 4, pp.356. ⟨10.3389/fpls.2013.00356⟩ Article dans une revue hal-02522224v1
Unified Nomenclature for Genes Involved in Prokaryotic Aerobic Arsenite Oxidation Marie-Claire Lett,Daniel Muller,Didier Lièvremont,Simon Silver,Joanne Santinid Journal of Bacteriology, 2012, pp.207-208. ⟨10.1128/JB.06391-11⟩ Article dans une revue halsde-00722718v1
Rapid and simultaneous detection of linear chromosome and large plasmids in Proteobacteria Martha Helena Ramírez-Bahena,Xavier Nesme,Daniel Muller Journal of Basic Microbiology, 2012, 52 (52), pp.1-4. ⟨10.1002/jobm.201100278⟩ Article dans une revue istex halsde-00723073v1
Monitoring of the relation between 2,4-diacetylphloroglucinol-producing Pseudomonas and Thielaviopsis basicola populations by real-time PCR in tobacco black root-rot suppressive and conducive soils Juliana Almario,Yvan Moënne-Loccoz,Daniel Muller Soil Biology and Biochemistry, 2012, ⟨10.1016/j.soilbio.2012.09.003⟩ Article dans une revue istex hal-02532808v1
Is diversification history of maize influencing selection of soil bacteria by roots? Marie-Lara Bouffaud,Martina Kyselková,Brigitte Gouesnard,Genevieve Grundmann,Daniel Mulleret al. Molecular Ecology, 2012, 21 (1), pp.195-206. ⟨10.1111/j.1365-294X.2011.05359.x⟩ Article dans une revue istex halsde-00722561v1
Genomic Species Are Ecological Species as Revealed by Comparative Genomics in Agrobacterium tumefaciens Florent Lassalle,Tony Campillo,Ludovic Vial,Jessica Baude,Denis Costechareyreet al. Genome Biology and Evolution, 2011, 3 (3), pp.762-781. ⟨10.1093/gbe/evr070⟩ Article dans une revue halsde-00723400v1
Development of a real-time PCR method to quantify the PGPR strain Azospirillum lipoferum CRT1 on maize seedlings Olivier Couillerot,Marie-Lara Bouffaud,Baudoin Ezékiel,Daniel Muller,Jesus Caballero-Melladoet al. Soil Biology and Biochemistry, 2010, 42 (12), pp.2298-2305. ⟨10.1016/j.soilbio.2010.09.003⟩ Article dans une revue istex hal-00874738v1
Structure, function, and evolution of the Thiomonas spp. genome. Florence Arsène-Ploetze,Sandrine Koechler,Marie Marchal,Jean-Yves Coppée,Michael Chandleret al. PLoS Genetics, 2010, 6 (2), pp.e1000859. ⟨10.1371/journal.pgen.1000859⟩ Article dans une revue hal-00463879v1
Arsenite Oxidase from Ralstonia sp. 22: characterization of the enzyme and its interaction with soluble cytochromes. Aurélie Lieutaud,Robert van Lis,Simon Duval,Line Capowiez,Daniel Mulleret al. Journal of Biological Chemistry, 2010, 285 (27), pp.20433-20441. ⟨10.1074/jbc.M110.113761⟩ Article dans une revue hal-01602032v1
Arsenite oxidation by a chemoautotrophic moderately acidophilic Thiomonas sp.: from the strain isolation to the gene study. M.-C. Lett,Aurélie Lieutaud,Daniel Muller,J. Ratouchniak,V. Bonnefoyet al. Environmental Microbiology, 2008, 10 (1), pp.228-37. ⟨10.1111/j.1462-2920.2007.01447.x⟩ Article dans une revue istex hal-00281294v1
Diversity surveys and evolutionary relationships of aoxB genes in aerobic arsenite-oxidizing bacteria. Marianne Quéméneur,Audrey Heinrich-Salmeron,Daniel Muller,Didier Lièvremont,Michel Jauzeinet al. Applied and Environmental Microbiology, 2008, 74 (14), pp.4567-73. ⟨10.1128/AEM.02851-07⟩ Article dans une revue hal-00370780v1
A tale of two oxidation states: bacterial colonization of arsenic-rich environments. Daniel Muller,Claudine Médigue,Sandrine Koechler,Valérie Barbe,​mohamed Barakatet al. PLoS Genetics, 2007, 3 (4), pp.e53. ⟨10.1371/journal.pgen.0030053⟩ Article dans une revue hal-00340034v1
A Bacterial Effector Targets Mad2L2, an APC Inhibitor, to Modulate Host Cell Cycling Hiroki Iwai,Minsoo Kim,Yuko Yoshikawa,Hiroshi Ashida,Michinaga Ogawaet al. Cell, 2007, 130 (4), pp.611-623. ⟨10.1016/j.cell.2007.06.043⟩ Article dans une revue hal-04245669v1
Herminiimonas arsenicoxydans sp. nov., a metalloresistant bacterium. Daniel Muller,Diliana D Simeonova,Philippe Riegel,Sophie Mangenot,Sandrine Koechleret al. International Journal of Systematic and Evolutionary Microbiology, 2006, 56 (Pt 8), pp.1765-9. ⟨10.1099/ijs.0.64308-0⟩ Article dans une revue hal-00113703v1
Identification of genes and proteins involved in the pleiotropic response to arsenic stress in Caenibacter arsenoxydans, a metalloresistant beta-proteobacterium with an unsequenced genome. Christine Carapito,Daniel Muller,Evelyne Turlin,Sandrine Koechler,Antoine Danchinet al. Biochimie, 2006, 88 (6), pp.595-606. ⟨10.1016/j.biochi.2005.11.004⟩ Article dans une revue istex hal-00370783v1
Chemiluminescence of enterococci isolates from freshwater. Philippe Andre,Catherine Metzger,Sophie Petey,Dominique J-M Vidon,Daniel Muller Microbiology Letters, 2005, 245 (1), pp.123-9. ⟨10.1016/j.femsle.2005.02.036⟩ Article dans une revue istex hal-00106769v1
Arsenite oxidation in batch reactors with alginate‐immobilized ULPAs1 strain Diliana Simeonova,Kalina Micheva,Daniel A.E. Muller,Florence Lagarde,Marie‐claire Lettet al. Biotechnology and Bioengineering, 2005, 91 (4), pp.441-446. ⟨10.1002/bit.20530⟩ Article dans une revue istex hal-04250284v1
Microplate screening assay for the detection of arsenite-oxidizing and arsenate-reducing bacteria Diliana Simeonova,Florence Lagarde,Daniel A.E. Muller,Veneta Groudeva,Marie-Claire Lett FEMS Microbiology Letters, 2004, 237 (2), pp.249-253. ⟨10.1111/j.1574-6968.2004.tb09703.x⟩ Article dans une revue hal-04247135v1
Arsenite oxidase, an ancient bioenergetic enzyme. Evelyne Lebrun,Myriam Brugna,Frauke Baymann,Daniel Muller,Didier Lièvremontet al. Molecular Biology and Evolution, 2003, 20 (5), pp.686-93. ⟨10.1093/molbev/msg071⟩ Article dans une revue hal-00113712v1
Arsenite oxidase aox genes from a metal-resistant beta-proteobacterium. Daniel Muller,Didier Lièvremont,Diliana Dancheva Simeonova,Jean-Claude Hubert,Marie-Claire Lett Journal of Bacteriology, 2003, 185 (1), pp.135-41 Article dans une revue hal-00113723v1

Chapitre d'ouvrage (4)

Alleviation of Abiotic and Biotic Stresses in Plants by Azospirillum Jordan Vacheron,Sébastien Renoud,Daniel Muller,Olubukola Oluranti Babalola,Claire Prigent-Combaret Fabricio Dario Cassán; Yaacov Okon; Cecilia M. Creus. Handbook for Azospirillum, Springer International Publishing, pp.333-365, 2015, 978-3-319-06542-7. ⟨10.1007/978-3-319-06542-7_19⟩ Chapitre d'ouvrage hal-02457880v1
Plant growth-promoting properties of Pseudomonas biocontrol agent producing 2,4 diacetylphloroglucinol Jordan Vacheron,Emeline Combes-Meynet,Yvan Moënne-Loccoz,Daniel Muller,Claire Prigent Combaret Cédric Bertrand. Natural Products and Biocontrol, Presses universitaires de Perpignan, 2014, 978-2-35412-234-8 Chapitre d'ouvrage hal-02479158v1
Horizontal Acquisition of Prokaryotic Genes for Eukaryote Functioning and Niche Adaptation Maxime Bruto,Claire Prigent Combaret,Patricia Luis,Gregory Hoff,Yvan Moënne-Loccozet al. Evolutionary Biology : Exobiology and Evolutionary Mechanisms, Springer, 2013, 978-3-642-38211-6. ⟨10.1007/978-3-642-38212-3_11⟩ Chapitre d'ouvrage hal-02563676v1
Rapid and Efficient Methods to Isolate, Type Strains and Determine Species of Agrobacterium spp. in Pure Culture and Complex Environments Malek Shams,Tony Campillo,Céline Lavire,Daniel Muller,Xavier Nesmeet al. Biochemical Testing, InTech, 2012, 978-953-51-0249-6. ⟨10.5772/36068⟩ Chapitre d'ouvrage hal-02566900v1

Communication dans un congrès (15)

Wheat genotypes and their interaction with plant-beneficial bacteria Jordan Valente,Christophe Gruet,Florence Gerin,Agathe Mini,Rémi Richardet al. 5. Cereals Breeding and Biotechnology Conference (CBB5), AK Congress; European Association for Research on Plant Breeding, Nov 2019, Budapest, Hungary Communication dans un congrès hal-02937622v1
Interactions of plant-beneficial rhizosphere bacteria according to cereal genotype Yvan Moenne-Loccoz,Jordan Valente,Marie-Lara Bouffaud,Brigitte Gouesnard,Jacques Le Gouiset al. EUCARPIA Cereal section Meeting "Breeeding cereals for sustainable agriculture, Mar 2018, Clermont-Ferrand, France Communication dans un congrès hal-02338153v1
Extensive interkingdom horizontal transfers of 1-aminocyclopropane-1-carboxylate deaminase genes between bacteria and filamentous microeukaryotes Maxime Bruto,Claire Prigent Combaret,Yvan Moënne-Loccoz,Daniel Muller 16. Evolutionary Biology Meeting, Sep 2012, Marseille, France Communication dans un congrès hal-02545169v1
Significance of the evolution of Zea mays and other Poaceae for rhizobacterial community composition Daniel Muller,Marie-Lara Bouffaud,Brigitte Gouesnard,Yvan Moënne-Loccoz 16th Evolutionary Biology Meeting, Sep 2012, Marseille, France Communication dans un congrès hal-02544401v1
Histoire évolutive des céréales et composition de la communauté bactérienne rhizosphérique Maxime Bruto,Claire Prigent-Combaret,Daniel Muller,Yvan Moënne-Loccoz 10th Plant-Bacteria Interactions Meeting, Jan 2012, Aussois, France Communication dans un congrès hal-02544381v1
Etude génomique des déterminants codant les propriétés phytobénéfiques des Protéobactéries Maxime Bruto,Claire Prigent Combaret,Daniel Muller,Yvan Moënne-Loccoz 10. Plant-Bacteria Interactions Meeting, Jan 2012, Aussois, France Communication dans un congrès hal-02545219v1
Effect of clay mineralogy on the plant-protecting activity of Pseudomonas in the rhizosphere Juliana Almario,Claire Prigent Combaret,Daniel Muller,Yvan Moënne-Loccoz 2nd meeting of Ph.D. students in Ecology, Evolution, Microbiology and Modelization, Mar 2012, VIlleurbanne, France Communication dans un congrès hal-02547978v1
Evaluation of 2,4-diacetylphloroglucinol fluorescent Pseudomonas for plant growth promotion Jordan Vacheron,F. Bellvert,Yvan Moënne-Loccoz,Daniel Muller,Claire Prigent Combaret 1st World Congress On Biostimulants on Agriculture, Nov 2012, Strasbourg, France Communication dans un congrès hal-02544356v1
Particularités génomiques et adaptations spécifiques des espèces bactériennes : cas d'Agrobacterium fabrum Tony Campillo,Jessica Baude,Ludovic Vial,Floriant Bellvert,Florent Lassalleet al. 10. Plant-Bacteria Interactions Meeting, 2012, Aussois, France Communication dans un congrès hal-02547657v1
Relation between landscape distribution of disease-suppressive soils, iron bioavailability for biocontrol Pseudomonas on roots, and rhizosphere expression of genes for 2,4-diacetylphloroglucinol synthesis Juliana Almario,Claire Prigent Combaret,Daniel Muller,Yvan Moënne-Loccoz 14. International Symposium on Microbial Ecology- ISME14, Aug 2012, Copenhaguen, Denmark Communication dans un congrès hal-02545176v1
Plant evolution and diversification a factor influencing selection of soil bacteria by roots Daniel Muller,Marie-Lara Bouffaud,Brigitte Gouesnard,Yvan Moënne-Loccoz Rhizosphere 3 International Conference 2011, Sep 2011, Perth, Australia Communication dans un congrès hal-02545550v1
Impact of plant evolutionary history on the recruitment and functioning of phytobeneficial rhizobacterial communities Marie-Lara Bouffaud,Yvan Moënne-Loccoz,Daniel Muller Rhizosphere 3 International Conference, Sep 2011, Perth, Australia Communication dans un congrès hal-02545584v1
La notion d'espèce en écologie microbienne T. Campillo,Malek Shams,Sally Burr,Martha Helena Ramírez-Bahena,Florent Lassalleet al. 1er Colloque National d'Ecologie Scientifique, Dec 2010, Montpellier, France Communication dans un congrès hal-02545628v1
Toward an ecological concept for bacterial species in Agrobacterium Tony Campillo,Florent Lassalle,M. Shams,Martha Helena Ramírez-Bahena,Jessica Baudeet al. 12th International Conference on Plant Pathogenic Bacteria, Jun 2010, Saint-Denis de La Réunion, France Communication dans un congrès hal-02545712v1
Identification de fonctions « spécifiques d'espèce » impliquées dans l'individualisation en écovar de l’espèce G8 du complexe Agrobacterium tumefaciens Florent Lassalle,Daniel Muller,Denis Costechareyre,David Chapulliot,Celine Lavireet al. Journées des Microbiologistes de l'INRA, May 2010, Poitiers, France Communication dans un congrès hal-02545733v1