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Daniel Vaulot

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Global patterns and rates of habitat transitions across the eukaryotic tree of life

Mahwash Jamy , Charlie Biwer , Daniel Vaulot , Aleix Obiol , Hongmei Jing
Nature Ecology & Evolution, 2022, ⟨10.1038/s41559-022-01838-4⟩
Journal articles hal-03765604v1
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metaPR 2 : A database of eukaryotic 18S rRNA metabarcodes with an emphasis on protists

Daniel Vaulot , Clarence Wei Hung Sim , Denise Ong , Bryan Teo , Charlie Biwer
Molecular Ecology Resources, inPress, ⟨10.1111/1755-0998.13674⟩
Journal articles hal-03765595v1
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The Green Edge cruise: Understanding the onset, life and fate of the Arctic phytoplankton spring bloom

Flavienne Bruyant , Rémi Amiraux , Marie-Pier Amyot , Philippe Archambault , Lise Artigue
Earth System Science Data, 2022, 14, pp.4607-4642. ⟨10.5194/essd-2022-41⟩
Journal articles hal-03782664v1
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pr2-primers: an 18S rRNA primer database for protists

Daniel Vaulot , Stefan Geisen , Frédéric Mahé , David Bass
Molecular Ecology Resources, 2022, 22 (1), pp.168-179. ⟨10.1111/1755-0998.13465⟩
Journal articles hal-03287553v1
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No evidence of Phago‐mixotropy in Micromonas polaris (Mamiellophyceae), the Dominant Picophytoplankton Species in the Arctic

Valeria Jimenez , John A Burns , Florence Le Gall , Fabrice Not , Daniel Vaulot
Journal of Phycology, 2021, 57 (2), pp.435-446. ⟨10.1111/jpy.13125⟩
Journal articles hal-03267092v1
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An 18S V4 rRNA metabarcoding dataset of protist diversity in the Atlantic inflow to the Arctic Ocean, through the year and down to 1000 m depth

Elianne Egge , Stephanie Elferink , Daniel Vaulot , Uwe John , Gunnar Bratbak
Earth System Science Data, 2021, 13 (10), pp.4913 - 4928. ⟨10.5194/essd-13-4913-2021⟩
Journal articles hal-03784323v1
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The MALINA oceanographic expedition: how do changesin ice cover, permafrost and UV radiation impactbiodiversity and biogeochemical fluxesin the Arctic Ocean?

Philippe Massicotte , Rainer Amon , David Antoine , Philippe Archambault , Sergio Balzano
Earth System Science Data, 2021, 13, pp.1561-1592. ⟨10.5194/essd-13-1561-2021⟩
Journal articles insu-02978433v3
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Annual phytoplankton dynamics in coastal waters from Fildes Bay, Western Antarctic Peninsula

Nicole Trefault , Rodrigo de La Iglesia , Mario Moreno-Pino , Adriana Lopes dos Santos , Catherine Gérikas Ribeiro
Scientific Reports, 2021, 11 (1), pp.1368. ⟨10.1038/s41598-020-80568-8⟩
Journal articles hal-03195921v1

Taxonomic Reassignment of Pseudohaptolina Birgeri comb. nov. (Haptophyta)

Catherine Gérikas Ribeiro , Adriana Lopes dos Santos , Ian Probert , Daniel Vaulot , Bente Edvardsen
Journal articles hal-03971143v1
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Culturable diversity of Arctic phytoplankton during pack ice melting

Catherine Gérikas Ribeiro , Adriana Lopes dos Santos , Priscillia Gourvil , Florence Le Gall , Dominique Marie
Elementa: Science of the Anthropocene, 2020, 8 (1), pp.6. ⟨10.1525/elementa.401⟩
Journal articles hal-02557111v2
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Contrasting pelagic ecosystem functioning in eastern and western Baffin Bay revealed by trophic network modeling

Blanche Saint-Béat , Brian D Fath , Cyril Aubry , Jonathan Colombet , Julie Dinasquet
Elementa: Science of the Anthropocene, 2020, 8, ⟨10.1525/elementa.397⟩
Journal articles hal-03095448v1

Taxonomic reassignment of Pseudohaptolina birgeri comb. nov . (Haptophyta)

Catherine Gérikas Ribeiro , Adriana Lopes dos Santos , Ian Probert , Daniel Vaulot , Bente Edvardsen
Phycologia, 2020, 59 (6), pp.606-615. ⟨10.1080/00318884.2020.1830255⟩
Journal articles hal-03971646v1
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Green Edge ice camp campaigns: understanding the processes controlling the under-ice Arctic phytoplankton spring bloom

Philippe Massicotte , Rémi Amiraux , Marie-Pier Amyot , Philippe Archambault , Mathieu Ardyna
Earth System Science Data : Papers in open discussion, 2020, 12 (1), pp.151-176. ⟨10.5194/essd-12-151-2020⟩
Journal articles hal-02292721v1
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Rhythmicity of coastal marine picoeukaryotes, bacteria and archaea despite irregular environmental perturbations

Stefan Lambert , Margot Tragin , Jean-Claude Lozano , Jean-François Ghiglione , Daniel Vaulot
The International Society of Microbiologial Ecology Journal, 2019, 13 (2), pp.388-401. ⟨10.1038/s41396-018-0281-z⟩
Journal articles hal-02326251v1
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Novel diversity within marine Mamiellophyceae (Chlorophyta) unveiled by metabarcoding

Margot Tragin , Daniel Vaulot
Scientific Reports, 2019, 9, pp.5190. ⟨10.1038/s41598-019-41680-6⟩
Journal articles hal-02094458v1
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High contribution of Rhizaria (Radiolaria) to vertical export in the California Current Ecosystem revealed by DNA metabarcoding

Andres Gutierrez-Rodriguez , Michael R. Stukel , Adriana Lopes dos Santos , Tristan Biard , Renate Scharek
The International Society of Microbiologial Ecology Journal, 2019, 13 (4), pp.964-976. ⟨10.1038/s41396-018-0322-7⟩
Journal articles hal-02323631v1
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temporal and spatial dynamics of Bacteria, Archaea and protists in equatorial coastal waters

Caroline Chénard , Winona Wijaya , Daniel Vaulot , Adriana Lopes dos Santos , Patrick Martin
Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-019-52648-x⟩
Journal articles hal-02402358v1
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Mantoniella beaufortii and Mantoniella baffinensis sp. nov. (Mamiellales, Mamiellophyceae), two new green algal species from the high arctic

Sheree Yau , Adriana Lopes dos Santos , Wenche Eikrem , Catherine Gérikas Ribeiro , Priscillia Gourvil
Journal of Phycology, 2019, ⟨10.1111/jpy.12932⟩
Journal articles hal-02407962v1

Alain Sournia, phycologist and philosopher (1940-2018)

Frédéric Partensky , Daniel Vaulot
Cahiers de Biologie Marine, 2018, 59, pp.403-407. ⟨10.21411/CBM.A.EA424D0A⟩
Journal articles hal-03971071v1

Small eukaryotic phytoplankton communities in tropical waters off Brazil are dominated by symbioses between Haptophyta and nitrogen-fixing cyanobacteria

Catherine Gérikas Ribeiro , Adriana Lopes dos Santos , Dominique Marie , Frederico Pereira Brandini , Daniel Vaulot
The International Society of Microbiologial Ecology Journal, 2018, 12 (5), pp.1360-1374. ⟨10.1038/s41396-018-0050-z⟩
Journal articles hal-03971747v1
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Bolidophyceae, a Sister Picoplanktonic Group of Diatoms – A Review

Akira Kuwata , Kazumasa Yamada , Mutsuo Ichinomiya , Shinya Yoshikawa , Margot Tragin
Frontiers in Marine Science, 2018, 5, pp.370. ⟨10.3389/fmars.2018.00370⟩
Journal articles hal-02022836v1
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A novel species of the marine cyanobacterium Acaryochloris with a unique pigment content and lifestyle

Frédéric Partensky , Christophe Six , Morgane Ratin , Laurence Garczarek , Daniel Vaulot
Scientific Reports, 2018, 8 (1), pp.9142. ⟨10.1038/s41598-018-27542-7⟩
Journal articles hal-01805749v1
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Green microalgae in marine coastal waters: The Ocean Sampling Day (OSD) dataset

Margot Tragin , Daniel Vaulot
Scientific Reports, 2018, 8 (1), pp.14020. ⟨10.1038/s41598-018-32338-w⟩
Journal articles hal-01880092v1
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Comparison of coastal phytoplankton composition estimated from the V4 and V9 regions of 18S rRNA gene with a focus on photosynthetic groups and especially Chlorophyta

Margot Tragin , Adriana Zingone , Daniel Vaulot
Environmental Microbiology, 2017, 20 (2), pp.506-520. ⟨10.1111/1462-2920.13952⟩
Journal articles hal-01628365v1
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Revision of the Genus Micromonas Manton et Parke (Chlorophyta, Mamiellophyceae), of the Type Species M. pusilla (Butcher) Manton & Parke and of the Species M. commoda van Baren, Bachy and Worden and Description of Two New Species Based on the Genetic and Phenotypic Characterization of Cultured Isolates

Nathalie Simon , Elodie Foulon , Daphné Grulois , Christophe Six , Yves Desdevises
Protist, 2017, 168 (5), pp.612-635. ⟨10.1016/j.protis.2017.09.002⟩
Journal articles hal-01614739v1
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Estimating microbial populations by flow cytometry: Comparison between instruments

Catherine Gérikas Ribeiro , Dominique Marie , Adriana Lopes dos Santos , Frederico Pereira Brandini , Daniel Vaulot
Limnology and Oceanography: Methods, 2017, 14 (11), pp.750 - 758. ⟨10.1002/lom3.10135⟩
Journal articles hal-01482199v1
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Improvement of phytoplankton culture isolation using single cell sorting by flow cytometry

Dominique Marie , Florence Le Gall , Roseline Edern , Priscillia Gourvil , Daniel Vaulot
Journal of Phycology, 2017, 53 (2 ), pp.271-282 ⟨10.1111/jpy.12495⟩
Journal articles hal-01408856v1
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Chloropicophyceae, a new class of picophytoplanktonic prasinophytes

Adriana Lopes dos Santos , Thibaut Pollina , Priscillia Gourvil , Erwan Corre , Dominique Marie
Scientific Reports, 2017, 7, pp.14019. ⟨10.1038/s41598-017-12412-5⟩
Journal articles hal-01634064v1

Diversity and oceanic distribution of prasinophytes clade VII, the dominant group of green algae in oceanic waters

Adriana Lopes dos Santos , Priscillia Gourvil , Margot Tragin , Mary-Hélène Noël , Johan Decelle
The International Society of Microbiologial Ecology Journal, 2017, 11 (2), pp.512-528. ⟨10.1038/ismej.2016.120⟩
Journal articles hal-03971261v1
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Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms

Mutsuo Ichinomiya , Adriana Lopes dos Santos , Priscillia Gourvil , Shinya Yoshikawa , Mitsunobu Kamiya
The International Society of Microbiologial Ecology Journal, 2016, 10, pp.2419-2434. ⟨10.1038/ismej.2016.38⟩
Journal articles hal-01292953v1
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Survey of the green picoalga Bathycoccus genomes in the global ocean

Thomas Vannier , Jade Leconte , Yoann Seeleuthner , Samuel Mondy , Eric Pelletier
Scientific Reports, 2016, 6, pp.37900. ⟨10.1038/srep37900⟩
Journal articles hal-01410203v1
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Pseudo-nitzschia arctica sp. nov., a new cold-water cryptic Pseudo-nitzschia species within the P. pseudodelicatissima complex

Isabella Percopo , Maria Valeria Ruggiero , Sergio Balzano , Priscillia Gourvil , Nina Lundholm
Journal of Phycology, 2016, 52 (25), pp.184-199. ⟨10.1111/jpy.12395-15-145⟩
Journal articles hal-01288747v1
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Pico and nanoplankton abundance and carbon stocks along the Brazilian Bight

Catherine Gérikas Ribeiro , Adriana Lopes dos Santos , Dominique Marie , Vivian Helena Pellizari , Frederico Pereira Brandini
PeerJ, 2016, 10 (4), pp.e2587. ⟨10.7717/peerj.2587⟩
Journal articles hal-01409756v1
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Morphological and genetic diversity of Beaufort Sea diatoms with high contributions from the Chaetoceros neogracilis species complex

Sergio Balzano , Isabella Percopo , Raffaele Siano , Priscillia Gourvil , Mélanie Chanoine
Journal of Phycology, 2016, 53 (1), pp.161-187 ⟨10.1111/jpy.12489⟩
Journal articles hal-01404481v1
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Benthic protists: the under-charted majority

Dominik Forster , Micah Dunthorn , Fréderic Mahé , John R. Dolan , Stéphane Audic
FEMS Microbiology Ecology, 2016, 92 (8), pp.fiw120. ⟨10.1093/femsec/fiw120⟩
Journal articles hal-01383722v1
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PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy

Johan Decelle , Sarah Romac , Rowena F Stern , El Mahdi Bendif , Adriana Zingone
Molecular Ecology Resources, 2015, 15 (6), pp.1435-1445. ⟨10.1111/1755-0998.12401⟩
Journal articles hal-01149047v1
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Photosynthetic pigments of oceanic Chlorophyta belonging to prasinophytes clade VII

Adriana Lopes dos Santos , Priscillia Gourvil , Francisco Rodríguez , José Luis Garrido , Daniel Vaulot
Journal of Phycology, 2015, 52 (1), pp.148-155. ⟨10.1111/jpy.12376⟩
Journal articles hal-01258694v1
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The ocean sampling day consortium

Anna Kopf , Mesude Bicak , Renzo Kottmann , Julia Schnetzer , Ivaylo Kostadinov
GigaScience, 2015, 4 (1), pp.27. ⟨10.1186/s13742-015-0066-5⟩
Journal articles hal-01174095v1
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Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

Ramon Massana , Angélique Gobet , Stéphane Audic , David Bass , Lucie Bittner
Environmental Microbiology, 2015, 17 (10), pp.4035-4049. ⟨10.1111/1462-2920.12955⟩
Journal articles hal-01191731v1
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An improved protocol for flow cytometry analysis of phytoplankton cultures and natural samples

Dominique Marie , Fabienne Rigaut-Jalabert , Daniel Vaulot
Cytometry Part A, 2014, 85 (11), pp.962-968. ⟨10.1002/cyto.a.22517⟩
Journal articles hal-01140601v1
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Metagenome Sequencing of the Microbial Community of a Solar Saltern Crystallizer Pond at Cahuil Lagoon, Chile

A. M. Plominsky , N. Delherbe , J. A. Ugalde , E. E. Allen , M. Blanchet
Genome Announcements, 2014, 2 (6), pp.e01172-14. ⟨10.1128/genomeA.01172-14⟩
Journal articles hal-01253989v1
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Community The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing

Patrick J Keeling , Fabien Burki , Heather M. Wilcox , Bassem Allam , Eric E Allen
PLoS Biology, 2014, 12 (6), pp.e1001889. ⟨10.1371/journal.pbio.1001889⟩
Journal articles hal-01109521v1

An annotated checklist of Marine Phytoplankton taxa at the SOMLIT-Astan time series off Roscoff (Western English Channel, France): data collected from 2000 to 2010

L. Guilloux , Fabienne Rigaut-Jalabert , Fabien Jouenne , Stephanie Ristori , Manon Viprey
Cahiers de Biologie Marine, 2013, 54 (2), pp.247-256
Journal articles hal-01253993v1
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The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

Laure Guillou , Dipankar Bachar , Stéphane Audic , David Bass , Cédric Berney
Nucleic Acids Research, 2013, 41 (D1), pp.D597-D604. ⟨10.1093/nar/gks1160⟩
Journal articles hal-01253994v1

Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses.

Simon Roux , François Enault , Gisèle Bronner , Daniel Vaulot , Patrick Forterre
Nature Communications, 2013, 4, pp.2700. ⟨10.1038/ncomms3700⟩
Journal articles hal-00881062v1
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Diversity of cultured photosynthetic flagellates in the northeast Pacific and Arctic Oceans in summer

Sergio Balzano , Priscillia Gourvil , R. Siano , M. Chanoine , Dominique Marie
Biogeosciences, 2012, 9 (11), pp.4553-4571. ⟨10.5194/bg-9-4553-2012⟩
Journal articles hal-01253998v1
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Metagenomes of the picoalga Bathycoccus from the Chile coastal upwelling.

Daniel Vaulot , Cécile Lepère , Eve Toulza , Rodrigo de La Iglesia , Julie Poulain
PLoS ONE, 2012, 7 (6), pp.e39648. ⟨10.1371/journal.pone.0039648⟩
Journal articles hal-00848707v1
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Evaluating the Ribosomal Internal Transcribed Spacer (ITS) as a Candidate Dinoflagellate Barcode Marker

Rowena F. Stern , Robert A. Andersen , Ian Jameson , Frithjof C. Kuepper , Mary-Alice Coffroth
PLoS ONE, 2012, 7 (8), pp.e42780. ⟨10.1371/journal.pone.0042780⟩
Journal articles hal-01254003v1

Lotharella reticulosa sp nov.: A Highly Reticulated Network Forming Chlorarachniophyte from the Mediterranean Sea

Shuhei Ota , Daniel Vaulot
Protist, 2012, 163 (1), pp.91-104. ⟨10.1016/j.protis.2011.02.004⟩
Journal articles hal-01254001v1
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Picophytoplankton biomass distribution in the global ocean

E. T. Buitenhuis , W. K. W. Li , Daniel Vaulot , M. W. Lomas , M. R. Landry
Earth System Science Data, 2012, 4 (1), pp.201-242. ⟨10.5194/essd-4-37-2012⟩
Journal articles hal-00939662v1

Unicellular Cyanobacterium Symbiotic with a Single-Celled Eukaryotic Alga

Anne W. Thompson , Rachel A. Foster , Andreas Krupke , Brandon J. Carter , Niculina Musat
Science, 2012, 337 (6101), pp.1546-1550. ⟨10.1126/science.1222700⟩
Journal articles hal-01254002v1

Composition of the summer photosynthetic pico and nanoplankton communities in the Beaufort Sea assessed by T-RFLP and sequences of the 18S rRNA gene from flow cytometry sorted samples

Sergio Balzano , Dominique Marie , Priscillia Gourvil , Daniel Vaulot
The International Society of Microbiologial Ecology Journal, 2012, 6 (8), pp.1480-1498. ⟨10.1038/ismej.2011.213⟩
Journal articles hal-01254004v1

Structure and seasonal dynamics of the eukaryotic picophytoplankton community in a wind-driven coastal upwelling ecosystem

Silvana Collado-Fabbri , Daniel Vaulot , Osvaldo Ulloa
Limnology and Oceanography, 2011, 56 (6), pp.2334-2346. ⟨10.4319/lo.2011.56.6.2334⟩
Journal articles hal-01254011v1

Whole-genome amplification (WGA) of marine photosynthetic eukaryote populations.

Cécile Lepère , Mikihide Demura , Masanobu Kawachi , Sarah Romac , Ian Probert
FEMS Microbiology Ecology, 2011, 76 (3), pp.513-23. ⟨10.1111/j.1574-6941.2011.01072.x⟩
Journal articles hal-00848702v1

Distribution of eukaryotic plankton in the English Channel and the North Sea in summer

Sylvie Masquelier , Elodie Foulon , Fabien Jouenne , Martial Ferréol , Corina P. D. Brussaard
Journal of Sea Research (JSR), 2011, 66 (2), pp.111-122. ⟨10.1016/j.seares.2011.05.004⟩
Journal articles hal-01254015v1
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Plastid 16S rRNA gene diversity among eukaryotic picophytoplankton sorted by flow cytometry from the South Pacific Ocean.

Xiao Li Shi , Cécile Lepère , David J Scanlan , Daniel Vaulot
PLoS ONE, 2011, 6 (4), pp.e18979. ⟨10.1371/journal.pone.0018979⟩
Journal articles hal-00848706v1

Prasinoderma singularis sp nov (Prasinophyceae, Chlorophyta), a Solitary Coccoid Prasinophyte from the South-East Pacific Ocean

Fabien Jouenne , Wenche Eikrem , Florence Le Gall , Dominique Marie , Geir Johnsen
Protist, 2011, 162 (1), pp.70-84. ⟨10.1016/j.protis.2010.04.005⟩
Journal articles hal-01254007v1

Use of flow cytometric sorting to better assess the diversity of small photosynthetic eukaryotes in the English Channel

Dominique Marie , Xiao Li Shi , Fabienne Rigaut-Jalabert , Daniel Vaulot
FEMS Microbiology Ecology, 2010, 72 (2), pp.165-178. ⟨10.1111/j.1574-6941.2010.00842.x⟩
Journal articles hal-01254020v1

Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts

Dikla Man-Aharonovich , Alon Philosof , Benjamin C. Kirkup , Florence Le Gall , Tali Yogev
The International Society of Microbiologial Ecology Journal, 2010, 4 (8), pp.1044-1052. ⟨10.1038/ismej.2010.25⟩
Journal articles hal-01254019v1
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Structure and variability of the microbial community associated to the Alboran Sea frontal system (Western Mediterranean) in winter

Stéphan Jacquet , Louis Prieur , Paul Nival , Daniel Vaulot
Journal of Oceanography, Research and data, 2010, 3 (4), pp.47-75
Journal articles hal-02656403v1

Photosynthetic picoeukaryote community structure in the South East Pacific Ocean encompassing the most oligotrophic waters on Earth

Cécile Lepère , Daniel Vaulot , David J. Scanlan
Environmental Microbiology, 2009, 11 (12), pp.3105-3117. ⟨10.1111/j.1462-2920.2009.02015.x⟩
Journal articles hal-01254025v1

Partenskyella glossopodia gen. et sp nov., the First Report of a Chlorarachniophyte that Lacks a Pyrenoid

Shuhei Ota , Daniel Vaulot , Florence Le Gall , Akinori Yabuki , Ken-Ichiro Ishida
Protist, 2009, 160 (1), pp.137-150. ⟨10.1016/j.protis.2008.09.003⟩
Journal articles hal-01254024v1
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Groups without Cultured Representatives Dominate Eukaryotic Picophytoplankton in the Oligotrophic South East Pacific Ocean

Xiao Li Shi , Dominique Marie , Ludwig Jardillier , David J. Scanlan , Daniel Vaulot
PLoS ONE, 2009, 4 (10), pp.e7657. ⟨10.1371/journal.pone.0007657⟩
Journal articles hal-01254027v1
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Distribution of micro-organisms along a transect in the South-East Pacific Ocean (BIOSOPE cruise) using epifluorescence microscopy

S. Masquelier , Daniel Vaulot
Biogeosciences, 2008, 5 (2), pp.311-321
Journal articles hal-00330350v1
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Introduction to the special section bio-optical and biogeochemical conditions in the South East Pacific in late 2004: the BIOSOPE program

Hervé Claustre , A. Sciandra , Daniel Vaulot
Biogeosciences, 2008, 5 (3), pp.679-691. ⟨10.5194/bg-5-679-2008⟩
Journal articles hal-00330707v2
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Picoplankton diversity in the South-East Pacific Ocean from cultures

F. Le Gall , F. Rigaut-Jalabert , D. Marie , L. Garczarek , M. Viprey
Biogeosciences, 2008, 5 (1), pp.203-214
Journal articles hal-00330342v1
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Picoplankton diversity in the South-East Pacific Ocean from cultures

F. Le Gall , F. Rigaut-Jalabert , D. Marie , L. Garczarek , M. Viprey
Biogeosciences Discussions, 2007, 4 (4), pp.2699-2732
Journal articles hal-00330257v1

Ability of a “minimum” microbial food web model to reproduce response patterns observed in mesocosms manipulated with N and P, glucose, and Si

Frede Thingstad , Harry Havskum , Ulla Li Zweifel , Elisa Berdalet , M. Montserrat Sala
Journal of Marine Systems, 2007, 64, pp.15-34. ⟨10.1016/j.jmarsys.2006.02.009⟩
Journal articles hal-02662877v1
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Distribution of micro-organisms along a transect in the South-East Pacific Ocean (BIOSOPE cruise) from epifluorescence microscopy

S. Masquelier , Daniel Vaulot
Biogeosciences Discussions, 2007, 4 (4), pp.2667-2697
Journal articles hal-00330256v1

Eukaryotic picoplankton communities of the Mediterranean Sea in summer assessed by molecular approaches (DGGE, TTGE, QPCR)

D Marie , F Zhu , V Balague , J Ras , D Vaulot
FEMS Microbiology Ecology, 2006, 55 (3), pp.403-415. ⟨10.1111/j.1574-6941.2005.00058.x⟩
Journal articles hal-03494191v1

Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene

F. Zhu , R. Massana , F. Not , D. Marie , D. Vaulot
FEMS Microbiology Ecology, 2005, 52 (1), pp.79-92
Journal articles hal-01651691v1

Ecotype diversity in the marine picoeukaryote Ostreococcus (Chlorophyta, Prasinophyceae)

Francisco Rodríguez , Evelyne Derelle , Laure Guillou , Florence Le Gall , Daniel Vaulot
Environmental Microbiology, 2005, 7 (6), pp.853-859. ⟨10.1111/j.1462-2920.2005.00758.x⟩
Journal articles hal-03160884v1

Effects of high light on transcripts of stress-associated genes for the cyanobacteria Synechocystis sp. PCC 6803 and Prochlorococcus MED4 and MIT9313.

Isabelle Mary , Chao-Jung Tu , Arthur Grossman , Daniel Vaulot
Microbiology, 2004, 150 (Pt 5), pp.1271-81
Journal articles hal-00528888v1

The Roscoff Culture Collection (RCC): a collection dedicated to marine picoplankton

D. Vaulot , F. Le Gall , D. Marie , L. Guillou , F. Partensky
Nova Hedwigia, 2004, 79 (1-2), pp.49-70
Journal articles hal-01663376v1

Two-component systems in Prochlorococcus MED4: genomic analysis and differential expression under stress.

Isabelle Mary , Daniel Vaulot
FEMS Microbiology Letters, 2003, 226 (1), pp.135-44
Journal articles hal-00529709v1

Quantitative assessment of picoeukaryotes in the natural environment by using taxon-specific oligonucleotide probes in association with tyramide signal amplification-fluorescence in situ hybridization and flow cytometry.

Isabelle C. Biegala , Fabrice Not , Daniel Vaulot , Nathalie Simon
Applied and Environmental Microbiology, 2003
Journal articles hal-01829143v1

Short-timescale variability of picophytoplankton abundance and cellular parameters in surface waters of the Alboran Sea (western Mediterranean)

Stéphan Jacquet , L. Prieur , C. Avois-Jacquet , J.F. Lennon , D. Vaulot
Journal of Plankton Research, 2002, 24 (7), pp.635-651
Journal articles hal-02669845v1

Kinetics of attachment of potentially toxic bacteria to Alexandrium tamarense

N Simon , Ic Biegala , Ea Smith , D. Vaulot
Aquatic Microbial Ecology, 2002, 28, pp.249 - 256. ⟨10.3354/ame028249⟩
Journal articles hal-01829170v1

Kinetics of attachment of potentially toxic bacteria to Alexandrium tamarense

Natalie Simon , Isabelle C. Biegala , Ea Smith , Daniel Vaulot
Aquatic Microbial Ecology, 2002, 28, pp.249-256. ⟨10.3354/ame028249⟩
Journal articles hal-00726584v1

Effects of inorganic and organic nutrient addition on a coastal microbial community (Isefjord, Denmark)

Stéphan Jacquet , H. Havskum , T.F. Thingstad , D. Vaulot
Marine Ecology Progress Series, 2002, 228, pp.3-14
Journal articles hal-02673770v1

Application of fluorescent in situ hybridization coupled with tyramide signal amplification (FISH-TSA) to assess eukaryotic picoplankton composition

Fabrice Not , Natalie Simon , Isabelle C. Biegala , Daniel Vaulot
Aquatic Microbial Ecology, 2002, 28, pp.157-166. ⟨10.3354/ame028157⟩
Journal articles hal-00726585v1

Short-timescale variability of picophytoplankton abundance and cellular parameters in surface waters of the Alboran Sea (western Mediterranean)

Stéphan Jacquet , L Prieur , C Avois-Jacquet , Jf Lennon , D Vaulot
Journal of Plankton Research, 2002, 24 (7), pp.635-651. ⟨10.1093/plankt/24.7.635⟩
Journal articles hal-03506691v1

Application of fluorescent in situ hybridization coupled with tyramide signal amplification (FISH-TSA) to assess eukaryotic picoplankton composition

N Not , N Simon , Ic Biegala , D. Vaulot
Aquatic Microbial Ecology, 2002, 28, pp.157 - 166. ⟨10.3354/ame028157⟩
Journal articles hal-01829149v1

Grazing impact of two small heterotrophic flagellates on Prochlorococcus and Synechococcus

Laure Guillou , Stéphan Jacquet , M.J. Chretiennot-Dinet , D. Vaulot
Aquatic Microbial Ecology, 2001, 26, pp.201-207
Journal articles hal-02673540v1

Diel expression of cell cycle-related genes in synchronized cultures of Prochlorococcus sp. strain PCC 9511.

J. Holtzendorff , Frédéric Partensky , Stéphanie Jacquet , Flavienne Bruyant , Dominique Marie
Journal of Bacteriology, 2001, 183 (3), pp.915-20. ⟨10.1128/JB.183.3.915-920.2001⟩
Journal articles hal-00529713v1
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Diel patterns of growth and division in marine picoplankton in culture

Stéphan Jacquet , Frédéric Partensky , Jean-François Lennon , Daniel Vaulot
Journal of Phycology, 2001, 37 (3), pp.357-369. ⟨10.1046/j.1529-8817.2001.037003357.x⟩
Journal articles hal-03163409v1
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Grazing impact of two small heterotrophic flagellates on Prochlorococcus and Synechococcus

L Guillou , S Jacquet , Mj Chrétiennot-Dinet , D Vaulot
Aquatic Microbial Ecology, 2001, 26, pp.201-207. ⟨10.3354/ame026201⟩
Journal articles hal-03163434v1

Abundance and diversity of prymnesiophytes in the picoplankton coμmunity from the equatorial Pacific Ocean inferred from 18S rDNA sequences

Laure Guillou , Seung Yeo Moon-van Der Staay , Georg van Der Staay , Daniel Vaulot , Herveé Claustre
Limnology and Oceanography Bulletin, 2000, 45 (1), pp.98-109. ⟨10.4319/lo.2000.45.1.0098⟩
Journal articles hal-03446956v1

Growth and grazing on Prochlorococcus and Synechococcus by two marine ciliates

U Christaki , Stéphan Jacquet , Jr Dolan , D Vaulot , F Rassoulzadegan
Limnology and Oceanography, 1999, 44 (1), pp.52-61. ⟨10.4319/lo.1999.44.1.0052⟩
Journal articles hal-03504555v1
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Divinyl chlorophyll a-specific absorption coefficients and absorption efficiency factors for Prochlorococcus marinus: kinetics of photoacclimation

A Bricaud , K Allali , R Morel , D Marie , Mjw Veldhuis
Marine Ecology Progress Series, 1999, 188, pp.21-32. ⟨10.3354/meps188021⟩
Journal articles hal-03284918v1

Bolidomonas: A new genus with two species belonging to a new algal class, the Bolidophyceae (Heterokonta)

L Guillou , Mj Chretiennot-Dinet , Lk Medlin , Hervé Claustre , S Loiseaux-de Goer
Journal of Phycology, 1999, 35 (2), pp.368-381. ⟨10.1046/j.1529-8817.1999.3520368.x⟩
Journal articles hal-03284911v1

Diel variability of photosynthetic picoplankton in the equatorial Pacific

D. Vaulot , D. Marie
Journal of Geophysical Research, 1999, 104 (C2), pp.3297-3310
Journal articles hal-01663410v1
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Variability in particle attenuation and chlorophyll fluorescence in the tropical Pacific: Scales, patterns, and biogeochemical implications

Hervé Claustre , A Morel , M Babin , C Cailliau , D Marie
Journal of Geophysical Research. Oceans, 1999, 104 (C2), pp.3401-3422. ⟨10.1029/98JC01334⟩
Journal articles hal-03284914v1

Symbiomonas scintillans gen. et sp. nov. and Picophagus flagellatus gen. et sp. nov. (Heterokonta): Two New Heterotrophic Flagellates of Picoplanktonic Size

Laure Guillou , Marie-Josèphe Chrétiennot-Dinet , Sandrine Boulben , Seung Yeo Moon-van Der Staay , Daniel Vaulot
Protist, 1999, 150 (4), pp.383-398. ⟨10.1016/S1434-4610(99)70040-4⟩
Journal articles hal-03446948v1

Diversity and abundance of bolidophyceae (Heterokonta) in two oceanic regions

L Guillou , Sy Moon-van Der Staay , Hervé Claustre , F Partensky , D Vaulot
Applied and Environmental Microbiology, 1999, 65 (10), pp.4528-4536
Journal articles hal-03284896v1

Picoplankton population dynamics in coastal waters of the northwestern Mediterranean Sea

Stéphan Jacquet , Jean-François Lennon , Dominique Marie , Daniel Vaulot
Limnology and Oceanography, 1998, ⟨10.4319/lo.1998.43.8.1916⟩
Journal articles hal-03163415v1
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RECENT ADVANCES IN THE USE OF MOLECULAR TECHNIQUES TO ASSESS THE GENETIC DIVERSITY OF MARINE PHOTOSYNTHETIC MICROORGANISMS

F Partensky , L Guillou , N Simon , D Vaulot
Vie et Milieu / Life & Environment, 1997, pp.367-374
Journal articles hal-03103861v1

The chitinous nature of filaments ejected by Phaeocystis (Prymnesiophyceae)

M.J. Chretiennot-Dinet , Marie-Madeleine Giraud-Guille , Daniel Vaulot , J.L. Putaux , Y. Saito
J. Phycol., 1997, pp.666-672
Journal articles hal-00309869v1

IDENTIFICATION OF THE CLASS PRYMNESIOPHYCEAE AND THE GENUS PHAEOCYSTIS WITH RIBOSOMAL RNA-TARGETED NUCLEIC ACID PROBES DETECTED BY FLOW CYTOMETRY

Laure Guillou , Martin Lange , Daniel Vaulot , Nathalie Simon , Rudolf Amann
Journal of Phycology, 1996, 32 (5), pp.858-868. ⟨10.1111/j.0022-3646.1996.00858.x⟩
Journal articles hal-03446932v1
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Carbon biomass, and gross growth rates as estimated from C-14 pigment labelling, during photoacclimation in Prochlorococcus CCMP 1378

C Cailliau , Hervé Claustre , F Vidussi , D Marie , D Vaulot
Marine Ecology Progress Series, 1996, 145 (1-3), pp.209-221. ⟨10.3354/meps145209⟩
Journal articles hal-03284955v1

Morphology, Ploidy, Pigment Composition, and Genome Size of Cultured Strains of Phaeocystis (Prymnesiophyceae)

D. Vaulot , J. L. Birrien , D. Marie , R. Casotti , M. J. W. Veldhuis
Journal of Phycology, 1994, 30 (6), pp.1022-1035
Journal articles hal-01663427v1

PROCHLOROCOCCUS AND SYNECHOCOCCUS - A COMPARATIVE-STUDY OF THEIR OPTICAL-PROPERTIES IN RELATION TO THEIR SIZE AND PIGMENTATION

A Morel , Yh Ahn , F Partensky , D Vaulot , Hervé Claustre
Journal of Marine Research, 1993, 51 (3), pp.617-649. ⟨10.1357/0022240933223963⟩
Journal articles hal-03476492v1

Cell-Cycle Distributions of Prochlorophytes in the North-Western Mediterranean-Sea

D. Vaulot , F. Partensky
Deep-sea research. Part A, Oceanographic research papers, 1992, 39 (5A), pp.727-742
Journal articles hal-01663432v1

A simple method to preserve oceanic phytoplankton for flow cytometric analyses

D. Vaulot , C. Courties , F. Partensky
Cytometry, 1989, 10 (5), pp.629-35
Journal articles hal-01663252v1

Light and dark control of the cell cycle in two marine phytoplankton species

D. Vaulot , R. J. Olson , S. W. Chisholm
Experimental Cell Research, 1986, 167 (1), pp.38-52
Journal articles hal-01663254v1
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Culturing Diatoms

Daniel Vaulot , Gust Bilcke , Peter Chaerle , Angela Falciatore , Priscillia Gourvil
Johannes Goessling; Johann Lavaud; João Serôdio. Diatom Photosynthesis: From Primary Production to High Value Molecules, Wiley-Scrivener, In press
Book sections hal-04000031v2