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David BOHAN

13
Documents

Publications

43480
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Leaf microbiome data for European cultivated grapevine (Vitis vinifera L.) during downy mildew (Plasmopara viticola) epidemics in three wine-producing regions in France

Didac Barroso-Bergadà , François Delmotte , Julie Faivre d'Arcier , Marie Massot , Emilie Chancerel
PhytoFrontiers™, 2023, 3, pp.477-483. ⟨10.1094/PHYTOFR-11-22-0138-A⟩
Article dans une revue hal-04059014v1
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Microbial biomarkers of tree water status for next‐generation biomonitoring of forest ecosystems

Marine C Cambon , Marine Trillat , Isabelle Lesur‐kupin , Régis Burlett , Emilie Chancerel
Molecular Ecology, 2023, 32 (22), pp.5944-5958. ⟨10.1111/mec.17149⟩
Article dans une revue hal-04272156v1

Unravelling the web of dark interactions: Explainable inference of the diversity of microbial interactions

Didac Barroso-Bergada , Alireza Tamaddoni-Nezhad , Dany Varghese , Corinne Vacher , Nika Galic
Advances in Ecological Research, 2023, Advances in Ecological Research, 68, pp.155-183. ⟨10.1016/bs.aecr.2023.09.005⟩
Article dans une revue hal-04443585v1
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The functional microbiome of grapevine throughout plant evolutionary history and lifetime

Paola Fournier , Lucile Pellan , Didac Barroso-Bergadà , David Bohan , Thierry Candresse
Advances in Ecological Research, 2022, Advances in Ecological Research, 67, pp.27-99. ⟨10.1016/bs.aecr.2022.09.001⟩
Article dans une revue hal-03858395v1
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Metagenomic next⁃generation sequencing (mNGS) data reveals the phyllosphere microbiome of wheat plants infected by the fungal pathogen Zymoseptoria tritici

Didac Barroso-Bergadà , Marie Massot , Noémie Vignolles , Julie Faivre d'Arcier , Emilie Chancerel
Phytobiomes Journal, 2022, 7 (2), pp.281-287. ⟨10.1094/PBIOMES-02-22-0008-FI⟩
Article dans une revue hal-03689876v1

Ecological plasticity governs ecosystem services in multilayer networks

Clare Gray , Athen Ma , Orla Mclaughlin , Sandrine Petit , Guy Woodward
Communications Biology, 2021, 4 (1), ⟨10.1038/s42003-020-01547-3⟩
Article dans une revue hal-03125364v1
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Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap

Tristan Cordier , Laura Alonso‐sáez , Laure Apothéloz‐perret‐gentil , Eva Aylagas , David Bohan
Molecular Ecology, 2021, 30 (13), pp.2937-2958. ⟨10.1111/mec.15472⟩
Article dans une revue hal-02860583v1
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Key questions for next-generation biomonitoring

Andreas Makiola , Zacchaeus G. Compson , Donald J Baird , Matthew A. Barnes , Sam Philip Boerlijst
Frontiers in Environmental Science, inPress, 7, ⟨10.3389/fenvs.2019.00197⟩
Article dans une revue hal-02402296v1
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Microbial networks inferred from environmental DNA data for biomonitoring ecosystem change: strengths and pitfalls

Didac Barroso‐bergada , Charlie Pauvert , Jessica Vallance , Laurent Deliere , David Bohan
Molecular Ecology Resources, inPress, ⟨10.1111/1755-0998.13302⟩
Article dans une revue hal-03049733v1

Ecological networks reveal resilience of agro-ecosystems to changes in farming management

Athen Ma , Xueke Lu , Clare Gray , Alan Raybould , Alireza Tamaddoni-Nezhad
Nature Ecology & Evolution, 2019, 3 (2), pp.260-264. ⟨10.1038/s41559-018-0757-2⟩
Article dans une revue hal-02626825v1

Machine learning of microbial interactions using abductive ILP and hypothesis frequency/compression estimation

Didac Barroso-Bergada , Alireza Tamaddoni-Nezhad , Stephen Muggleton , Corinne Vacher , Nika Galic
30. International Conference on Inductive Logic Programming (ILP) held as part of the 1st International Joint Conference on Learning and Reasoning (IJCLR), Oct 2021, Virtuel, France. pp.26-40, ⟨10.1007/978-3-030-97454-1_3⟩
Communication dans un congrès hal-03647109v1
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Coupling ecological network analysis with high-throughput sequencing-based surveys: Lessons from the next-generation biomonitoring project

Maxime Dubart , Pascal Alonso , Didac Barroso-Bergadà , N. Becker , Kevine Bethune
David A. Bohan; Alex J. Dumbrell; Adam J. Vanbergen. The Future of Agricultural Landscapes, Part III, 65, Elsevier, pp.367-430, 2022, Advances in Ecological Research, 9780323915038. ⟨10.1016/bs.aecr.2021.10.007⟩
Chapitre d'ouvrage hal-03634351v1

Machine Learning of Microbial Interactions Using Abductive ILP and Hypothesis Frequency/Compression Estimation

Didac Barroso-Bergada , Alireza Tamaddoni-Nezhad , Stephen Muggleton , Corinne Vacher , Nika Galic
Inductive Logic Programming, 13191, Springer International Publishing, pp.26-40, 2022, Lecture Notes in Computer Science, 978-3-030-97454-1; 978-3-030-97453-4. ⟨10.1007/978-3-030-97454-1_3⟩
Chapitre d'ouvrage hal-03689865v1