Davide Degli Esposti Chargé de Recherche

Identifiants chercheurs

IdHAL :

davide-degli-esposti

ORCID :

0000-0003-1390-4845

IdRef :

153085479

ResearcherID :

http://www.researcherid.com/rid/M-1917-2015

Publications

Article dans une revue (39)

Increased assimilation efficiency and mortality rate in Gammarus fossarum exposed to PVC microplastics Nans Barthelemy,Florian Mermillod-Blondin,Anabelle Espeyte,Mohammad Wazne,Frédéric Hervantet al. Environmental Pollution, 2025, 372, pp.126029. ⟨10.1016/j.envpol.2025.126029⟩ Article dans une revue hal-05099610v1
Cadmium tolerance is associated with tissue-specific plasticity of metallothionein gene expression in Gammarus fossarum field populations Auréline Lalouette,Arnaud Chaumot,Louveline Lepeule,Karen Gaget,Nicolas Delormeet al. Scientific Reports, 2025, 15 (1), pp.13913. ⟨10.1038/s41598-025-98937-6⟩ Article dans une revue hal-05068990v1
Editorial trend: adverse outcome pathway (AOP) and computational strategy — towards new perspectives in ecotoxicology Damien Baudiffier,Karine Audouze,Olivier Armant,Sandrine Frelon,Sandrine Charleset al. Environmental Science and Pollution Research, 2024, 31 (5), pp.6587-6596. ⟨10.1007/s11356-023-30647-w⟩ Article dans une revue hal-04296774v1
Dépister les perturbateurs endocriniens en milieux aquatiques Davide Degli-Esposti Les cahiers de la Recherche : Santé, Environnement, Travail, 2024, 23, pp.28-29 Article dans une revue hal-05203710v1
Concomitant investigation of crustacean amphipods lipidome and metabolome during the molting cycle by Zeno SWATH data-independent acquisition coupled with electron activated dissociation and machine learning Thomas Alexandre Brunet,Yohann Clément,Valentina Calabrese,Jérôme Lemoine,Olivier Geffardet al. Analytica Chimica Acta, 2024, 1304, pp.342533. ⟨10.1016/j.aca.2024.342533⟩ Article dans une revue hal-04535105v1
ToF-SIMS imaging shows specific lipophilic vitamin alterations in chronic reprotoxicity caused by the emerging contaminant Pravastatin in Gammarus fossarum. Tingting Fu,Valentina Calabrese,Anabelle Espeyte,Sarah Bancel,Hervé Quéauet al. Aquatic Toxicology, 2024, 271, pp.106935. ⟨10.1016/j.aquatox.2024.106935⟩ Article dans une revue hal-04565127v1
Electron-activated dissociation (EAD) for the complementary annotation of metabolites and lipids through data-dependent acquisition analysis and feature-based molecular networking, applied to the sentinel amphipod Gammarus fossarum Valentina Calabrese,Thomas Alexandre Brunet,Davide Degli-Esposti,Arnaud Chaumot,Olivier Geffardet al. Analytical and Bioanalytical Chemistry, 2024, 416 (12), pp.2893-2911. ⟨10.1007/s00216-024-05232-w⟩ Article dans une revue hal-04507595v1
Proteogenomic reconstruction of organ-specific metabolic networks in an environmental sentinel species, the amphipod Gammarus fossarum Natacha Koenig,Patrice Baa-Puyoulet,Amélie Lafont,Isis Lorenzo-Colina,Vincent Navratilet al. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, 2024, 52, pp.101323. ⟨10.1016/j.cbd.2024.101323⟩ Article dans une revue hal-04704294v1
Reproductive Capacity, but not Food Consumption, is Reduced by Continuous Exposure to Typical Genotoxic Stressor γ-Rays in the sentinel species Gammarus fossarum Sandrine Frelon,Rémi Recoura-Massaquant,Nicolas Dubourg,Laura Garnero,Jean-Marc Bonzomet al. Environmental Toxicology and Chemistry, 2024, 43 (9), pp.2071-2079. ⟨10.1002/etc.5949⟩ Article dans une revue hal-04867566v1
Identification and organ-specific patterns of expression of two metallothioneins in the sentinel species Gammarus fossarum Davide Degli Esposti,Auréline Lalouette,Karen Gaget,Louveline Lepeule,Zineb Chaabiet al. Comparative Biochemistry and Physiology. Part B, Biochemistry and Molecular Biology, 2024, 269, pp.110907. ⟨10.1016/j.cbpb.2023.110907⟩ Article dans une revue hal-04704318v1
Dynamic Multiple Reaction Monitoring of amphipod Gammarus fossarum caeca expands molecular information for understanding the impact of contaminants Maxime Leprêtre,Arnaud Chaumot,Rayan Aboud,Nicolas Delorme,Anabelle Espeyteet al. Science of the Total Environment, 2023, 893, pp.164875. ⟨10.1016/j.scitotenv.2023.164875⟩ Article dans une revue hal-04358369v1
Challenges and perspectives in MS-based omics approaches for ecotoxicology studies: An insight on Gammarids sentinel amphipods Valentina Calabrese,Arnaud Salvador,Yohann Clément,Thomas Alexandre Brunet,Anabelle Espeyteet al. Frontiers in Analytical Science, 2023, 3, pp.1118494. ⟨10.3389/frans.2023.1118494⟩ Article dans une revue hal-03986050v1
Organ-oriented proteogenomics functional atlas of three aquatic invertebrate sentinel species Maxime Leprêtre,Davide Degli Esposti,Kevin Sugier,Anabelle Espeyte,Jean-Charles Gaillardet al. Scientific Data , 2023, 10 (1), pp.643. ⟨10.1038/s41597-023-02545-w⟩ Article dans une revue (data paper) hal-04372093v1
Development of a multi-omics extraction method for ecotoxicology: investigation of the reproductive cycle of Gammarus fossarum Julien Faugere,Thomas Alexandre Brunet,Yohann Clément,Anabelle Espeyte,Olivier Geffardet al. Talanta, 2023, 253, pp.123806. ⟨10.1016/j.talanta.2022.123806⟩ Article dans une revue hal-03773623v1
Acclimation and transgenerational plasticity support increased cadmium tolerance in Gammarus populations exposed to natural metal contamination in headwater streams Auréline Lalouette,Davide Degli Esposti,Laura Garnero,Maxime Allibert,Lysiane Dherretet al. Science of the Total Environment, 2023, 903, pp.166216. ⟨10.1016/j.scitotenv.2023.166216⟩ Article dans une revue hal-04371960v1
From Extrapolation to Precision Chemical Hazard Assessment: The Ecdysone Receptor Case Study Raquel Ruivo,João Sousa,Teresa Neuparth,Olivier Geffard,Arnaud Chaumotet al. Toxics, 2022, 10 (1), pp.8. ⟨10.3390/toxics10010006⟩ Article dans une revue hal-03788309v1
Determination of biomarkers threshold values and illustration of their use for the diagnostic in large-scale freshwater biomonitoring surveys Maxime Leprêtre,Alain Geffard,Mélissa Palos Ladeiro,Odile Dedourge-Geffard,Elise Davidet al. Environmental Sciences Europe , 2022, 34 (1), pp.115. ⟨10.1186/s12302-022-00692-2⟩ Article dans une revue hal-04047998v1
Multiple reaction monitoring mass spectrometry for the discovery of environmentally modulated proteins in an aquatic invertebrate sentinel species, Gammarus fossarum Maxime Leprêtre,Olivier Geffard,Anabelle Espeyte,Julien Faugere,Sophie Ayciriexet al. Environmental Pollution, 2022, 315, pp.120393. ⟨10.1016/j.envpol.2022.120393⟩ Article dans une revue hal-04045037v1
Shotgun lipidomics and mass spectrometry imaging unveil diversity and dynamics in Gammarus fossarum lipid composition Tingting Fu,Oskar Knittelfelder,Yohann Clément,Eric Testet,Nicolas Elieet al. iScience, 2021, 24 (2), pp.1-44. ⟨10.1016/j.isci.2021.102115⟩ Article dans une revue hal-03134038v1
Subcellular Distribution of Dietary Methyl-Mercury in Gammarus fossarum and Its Impact on the Amphipod Proteome Claudia Cosio,Davide Degli-Esposti,Christine Almunia,Véronique Gaillet,Hervé Sarteletet al. Environmental Science and Technology, 2021, 55 (15), pp.10514 - 10523. ⟨10.1021/acs.est.1c02385⟩ Article dans une revue hal-03376460v1
Des bioessais écotoxicologiques in situ pour évaluer les impacts biologiques de la contamination chimique des cours d'eau nationaux : l'expérience du gammare Arnaud Chaumot,Olivier Perceval,Rémi Recoura-Massaquant,Davide Degli Esposti,Olivier Geffard Sciences Eaux & Territoires, 2021, 37, pp.88-91. ⟨10.14758/SET-REVUE.2021.4.16⟩ Article dans une revue hal-03601759v1
Co-expression network analysis identifies novel molecular pathways associated with cadmium and pyriproxyfen testicular toxicity in Gammarus fossarum Natacha Koenig,Christine Almunia,Aurore Bonnal-Conduzorgues,Jean Armengaud,Arnaud Chaumotet al. Aquatic Toxicology, 2021, 235, ⟨10.1016/j.aquatox.2021.105816⟩ Article dans une revue hal-03487859v1
In situ isobaric lipid mapping by MALDI-ion mobility separation-mass spectrometry imaging Tingting Fu,Janina Oetjen,Manuel Chapelle,Alexandre Verdu,Matthias Szesnyet al. Journal of Mass Spectrometry, 2020, 55 (9), pp.e4531. ⟨10.1002/jms.4531⟩ Article dans une revue hal-03113280v1
A “Population Dynamics” Perspective on the Delayed Life-History Effects of Environmental Contaminations: An Illustration with a Preliminary Study of Cadmium Transgenerational Effects over Three Generations in the Crustacean Gammarus Pauline Cribiu,Alain Devaux,Laura Garnero,Khedidja Abbaci,Thérèse Bastideet al. International Journal of Molecular Sciences, 2020, 21 (13), pp.4704. ⟨10.3390/ijms21134704⟩ Article dans une revue hal-02921628v1
Proteogenomics‐Guided Evaluation of RNA‐Seq Assembly and Protein Database Construction for Emergent Model Organisms Yannick Cogne,Duarte Gouveia,Arnaud Chaumot,Davide Degli Esposti,Olivier Geffardet al. Proteomics, 2020, 20 (10), pp.1-11. ⟨10.1002/pmic.201900261⟩ Article dans une revue hal-02922078v1
High-multiplexed monitoring of protein biomarkers in the sentinel Gammarus fossarum by targeted scout-MRM assay, a new vision for ecotoxicoproteomics Julien Faugère,Duarte Gouveia,Sophie Ayciriex,Arnaud Chaumot,Christine Almuniaet al. Journal of Proteomics, 2020, 226, pp.103901. ⟨10.1016/j.jprot.2020.103901⟩ Article dans une revue hal-02903090v1
Combining proteogenomics and metaproteomics for deep taxonomic and functional characterization of microbiomes from a non-sequenced host Duarte Gouveia,Olivier Pible,Karen Culotta,Virginie Jouffret,Olivier Geffardet al. npj Biofilms and Microbiomes, 2020, 6 (1), pp.7. ⟨10.1038/s41522-020-0133-2⟩ Article dans une revue hal-02922047v1
Co-expression network analysis identifies gonad- and embryo- associated protein modules in the sentinel species Gammarus fossarum Davide Degli Esposti,Christine Almunia,Marc-Antoine Guery,Natacha Koenig,J. Armengaudet al. Scientific Reports, 2019, 9 (1), pp.1-10. ⟨10.1038/s41598-019-44203-5⟩ Article dans une revue hal-02622270v1
Shotgun proteomics datasets acquired on Gammarus pulex animals sampled from the wild D. Gouveia,Yannick Cogne,J.C. Gaillard,C. Almunia,O. Pibleet al. Data in Brief, 2019, 27, pp.6. ⟨10.1016/j.dib.2019.104650⟩ Article dans une revue (data paper) hal-02610033v1
Recommandations d'un collectif franco-suisse d'experts pour une meilleure évaluation de la qualité écotoxicologique des sédiments par l'étude des communautés benthiques Stéphane Pesce,J.D. Ferrari,C. Bonnineau,C. Casado,L. Apotheloz Perret Gentilet al. Sciences Eaux & Territoires, 2019, HS, pp.9. ⟨10.14758/SET-REVUE.2019.hs.04⟩ Article dans une revue hal-02609267v1
De novo transcriptomes of 14 gammarid individuals for proteogenomic analysis of seven taxonomic groups Yannick Cogne,Davide Degli Esposti,O. Pible,D. Gouveia,Adeline Françoiset al. Scientific Data , 2019, 6 (1), pp.7. ⟨10.1038/s41597-019-0192-5⟩ Article dans une revue (data paper) hal-02610005v1
Comparative proteomics in the wild: Accounting for intrapopulation variability improves describing proteome response in a Gammarus pulex field population exposed to cadmium Yannick Cogne,Christine Almunia,Duarte Gouveia,Olivier Pible,Adeline Françoiset al. Aquatic Toxicology, 2019, 214, pp.105244. ⟨10.1016/j.aquatox.2019.105244⟩ Article dans une revue hal-02922064v1
The methylome of the celiac intestinal epithelium harbours genotype-independent alterations in the HLA region Nora Fernandez-Jimenez,Koldo Garcia-Etxebarria,Leticia Plaza-Izurieta,Irati Romero-Garmendia,Amaia Jauregi-Miguelet al. Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-018-37746-6⟩ Article dans une revue hal-02983598v1
In vitro transformation of primary human hepatocytes: Epigenetic changes and stemness properties Floriane Pez,Patricia Gifu,Davide Degli-Esposti,Nadim Fares,Anaïs Lopezet al. Experimental Cell Research, 2019, 384, pp.111643 -. ⟨10.1016/j.yexcr.2019.111643⟩ Article dans une revue hal-03488431v1
Ecotoxicoproteomics: A decade of progress in our understanding of anthropogenic impact on the environment Duarte Gouveia,Christine Almunia,Yannick Cogne,Olivier Pible,Davide Degli Espostiet al. Journal of Proteomics, 2019, 198, pp.66-77. ⟨10.1016/j.jprot.2018.12.001⟩ Article dans une revue hal-02109172v1
Digging deeper into the pyriproxyfen-response of the amphipod Gammarus fossarum with a next-generation ultra-high-field Orbitrap analyser: new perspectives for environmental toxicoproteomics J. Trapp,D. Gouveia,C. Almunia,O. Pible,Davide Degli Espostiet al. Frontiers in Environmental Science, 2018, 6, 31 p. ⟨10.3389/fenvs.2018.00054⟩ Article dans une revue hal-02074284v1
Identification, expression, and endocrine-disruption of three ecdysone-responsive genes in the sentinel species Gammarus fossarum D. Gouveia,F. Bonneton,C. Almunia,J. Armengaud,H. Queauet al. Scientific Reports, 2018, 8 (3793), ⟨10.1038/s41598-018-22235-7⟩ Article dans une revue hal-02073105v1
Glycogen synthase kinase 3-mediated voltage-dependent anion channel phosphorylation controls outer mitochondrial membrane permeability during lipid accumulation. Cecile Martel,Maya Allouche,Davide Degli Esposti,Elena Fanelli,Céline Boursieret al. Hepatology, 2013, 57 (1), pp.93-102. ⟨10.1002/hep.25967⟩ Article dans une revue hal-00734262v1
First experimental evidence of peritoneal and pleural mesotheliomas induced by fluoro-edenite fibres present in Etnean volcanic material from Biancavilla (Sicily, Italy) Morando Soffritti,Franco Minardi,Luciano Bua,Davide Degli Esposti,Fiorella Belpoggi European Journal of Oncology, 2004 Article dans une revue hal-04359150v1

Chapitre d'ouvrage (2)

Ecotoxicology, aquatic invertebrates Arnaud Chaumot,Davide Degli Esposti,Miguel Santos,Olivier Geffard Encyclopedia of Toxicology, Elsevier, pp.23-30, 2024, ⟨10.1016/B978-0-12-824315-2.00116-0⟩ Chapitre d'ouvrage hal-04372207v1
New Challenges: Omics Technologies in Ecotoxicology Odette Prat,Davide Degli Esposti Ecotoxicology: New Challenges And New Approaches, In press Chapitre d'ouvrage hal-02964531v1

Pré-publication, Document de travail (2)

Cadmium tolerance is associated with metallothionein gene expression plasticity in Gammarus fossarum field populations Auréline Lalouette,Arnaud Chaumot,Louveline Lepeule,Karen Gaget,Nicolas Delormeet al. 2024 Pré-publication, Document de travail hal-04792699v1
Concomitant investigation of crustacean amphipods lipidome and metabolome during molting stage by Zeno SWATH Data-Independent Acquisition coupled with Electron Activated Dissociation and machine learning Thomas Alexandre Brunet,Yohann Clement,Valentina Calabrese,Jerome Lemoine,Olivier Geffardet al. 2023 Pré-publication, Document de travail hal-04328990v1

Rapport (3)

Protéomique ciblée pour la quantification multiplexée de biomarqueurs : perspectives pour la surveillance environnementale Anabelle Espeyte,Davide Degli Esposti,Maxime Leprêtre,Hugo Detante,Kévin Sugieret al. INRAE; OFB. 2023 Rapport hal-04246106v1
Protéomique ciblée pour la quantification multiplexée de biomarqueurs, perspectives pour la surveillance environnementale Anabelle Espeyte,Davide Degli Esposti,Maxime Leprêtre,Hugo Detante,Kevin Sugieret al. INRAE RiverLy. 2023 Rapport hal-04138910v1
Protéomique ciblée pour la quantification multiplexée de biomarqueurs: perspectives pour la surveillance environnementale. Construction d'une stratégie partagée et généralisable entre espèces pour l'identification de protéines d'intérêt - Cas d'étude chez Gammarus fossarum (Rapport d'étape) Anabelle Espeyte,Davide Degli-Esposti,Julien Faugère,Sophie Ayciriex,Arnaud Salvadoret al. INRAE; OFB. 2019 Rapport hal-03971107v1

Thèse (1)

Les mécanismes de réponse à l'inflammation chronique dans le foie stéatosique et les conséquences sur l'homéostasie cellulaire et la cancérogénèse Davide Degli Esposti Sciences agricoles. Université Paris Sud - Paris XI, 2011. Français. ⟨NNT : 2011PA114809⟩ Thèse tel-00652594v1

HDR (1)

Intérêt des approches -omiques en écotoxicologie moléculaire : démonstration chez une espèce sentinelle, le crustacé d’eau douce Gammarus fossarum. Davide Degli Esposti Ecotoxicologie. Université de Lyon, 2023 HDR tel-04358438v1