Delphine Charif

Publications

Pré-publication, Document de travail (1)

RBApy: Extending resource allocation modeling to eukaryotes in complex environments Oliver Bodeit,Nadia Bessoltane-Bentahar,Delphine Charif,Anaghim Temtem,Olivier Inizanet al. 2026 Pré-publication, Document de travail hal-05585881v1

Article dans une revue (26)

Rapid meiotic prophase chromosome movements in Arabidopsis thaliana are linked to essential reorganization at the nuclear envelope Laurence Cromer,Mariana Tiscareno-Andrade,Sandrine Lefranc,Aurélie Chambon,Aurélie Hurelet al. Nature Communications, 2024, 15 (1), pp.5964. ⟨10.1038/s41467-024-50169-4⟩ Article dans une revue hal-04495019v1
A transcriptomic dataset for investigating the Arabidopsis Unfolded Protein Response under chronic, proteotoxic endoplasmic reticulum stress Amélie Ducloy,Marianne Azzopardi,Caroline Ivsic,Gwendal Cueff,Delphine Sourdevalet al. Data in Brief, 2024, 53, pp.110243. ⟨10.1016/j.dib.2024.110243⟩ Article dans une revue (data paper) hal-04566255v1
Genome-wide specificity of plant genome editing by both CRISPR–Cas9 and TALEN Nadia Bessoltane,Florence Charlot,Anouchka Guyon-Debast,Delphine Charif,Kostlend Maraet al. Scientific Reports, 2022, 12 (1), ⟨10.1038/s41598-022-13034-2⟩ Article dans une revue hal-03726730v1
Datasets of seed mucilage traits for Arabidopsis thaliana natural accessions with atypical outer mucilage Mireille Cambert,Adeline Berger,Christine Sallé,Stéphanie Esling,Delphine Charifet al. Scientific Data , 2021, 8 (1), ⟨10.1038/s41597-021-00857-3⟩ Article dans une revue (data paper) hal-03185128v1
Corrigendum: FANCM Limits Meiotic Crossovers in Brassica Crops Aurélien Blary,Adrián Gonzalo,Frédérique Eber,Aurélie Bérard,Hélène Bergèset al. Frontiers in Plant Science, 2020, 11, pp.604728. ⟨10.3389/fpls.2020.604728⟩ Article dans une revue hal-03161790v1
Extensive nuclear reprogramming and endoreduplication in mature leaf during floral induction Stefania del Prete,Anne Molitor,Delphine Charif,Nadia Bessoltane-Bentahar,Ludivine Soubigou-Taconnatet al. BMC Plant Biology, 2019, 19, pp.135. ⟨10.1186/s12870-019-1738-6⟩ Article dans une revue hal-02618994v1
Homoeologous exchanges cause extensive dosage-dependent gene expression changes in an allopolyploid crop Andrew Lloyd,Aurélien Blary,Delphine Charif,Catherine Charpentier,Joseph Tranet al. New Phytologist, 2018, 217 (1), pp.367-377. ⟨10.1111/nph.14836⟩ Article dans une revue hal-02624624v1
FANCM Limits Meiotic Crossovers in Brassica Crops Aurélien Blary,Adrián Gonzalo,Frederique Eber,Aurélie Berard,Helene Bergeset al. Frontiers in Plant Science, 2018, 9, 13 p. ⟨10.3389/fpls.2018.00368⟩ Article dans une revue hal-02623280v1
Xyloglucan Metabolism Differentially Impacts the Cell Wall Characteristics of the Endosperm and Embryo during Arabidopsis Seed Germination J. Sechet,A. Frey,D. Effroy-Cuzzi,A. Berger,F. Perreauet al. Plant Physiology, 2016, 170 (3), pp.1367--80. ⟨10.1104/pp.15.01312⟩ Article dans une revue hal-01563909v1
Meiotic Gene Evolution: Can You Teach a New Dog New Tricks? Andrew Lloyd,Marion Ranoux,Sonia S. Vautrin,Natasha Marie Glover,Joëlle Fourmentet al. Molecular Biology and Evolution, 2014, 31 (7), pp.1724-1727. ⟨10.1093/molbev/msu119⟩ Article dans une revue hal-02635778v1
A cryptic cytoplasmic male sterility unveils a possible gynodioecious past for [i]Arabidopsis thaliana[/i] Nicolas Gobron,Cesary Waszczak,Matthieu Simon,Sophie Hiard,Stéphane Boivinet al. PLoS ONE, 2013, 8 (4), ⟨10.1371/journal.pone.0062450⟩ Article dans une revue hal-01190571v1
Influence of Wolbachia on host gene expression in an obligatory symbiosis. Natacha Kremer,Delphine Charif,Hélène Henri,Frédérick F. Gavory,Patrick Winckeret al. BMC Microbiology, 2012, 12 (Suppl 1), pp.1-16. ⟨10.1186/1471-2180-12-S1-S7⟩ Article dans une revue hal-00763438v1
Feminizing Wolbachia: a transcriptomics approach with insights on the immune response genes in Armadillidium vulgare Frédéric Chevalier,Juline Herbinière-Gaboreau,Delphine Charif,Guillaume Mitta,Frédérick F. Gavoryet al. BMC Microbiology, 2012, 12 (suppl), pp.S1. ⟨10.1186/1471-2180-12-S1-S1⟩ Article dans une revue halsde-00661197v1
Host gene response to endosymbiont and pathogen in the cereal weevil \textitSitophilus oryzae A. Vigneron,Delphine Charif,C. Vincent-Monégat,A. Vallier,Frédérick F. Gavoryet al. BMC Microbiology, 2012, 12, pp.S14. ⟨10.1186/1471-2180-12-S1-S14⟩ Article dans une revue hal-02278586v1
Comparative high-throughput transcriptome sequencing and development of SiESTa, the \textitSilene EST annotation database N. Blavet,D. Charif,C. Oger-Desfeux,Gabriel Marais,A. Widmer BMC Genomics, 2011, 12, pp.1-11. ⟨10.1186/1471-2164-12-376⟩ Article dans une revue hal-02303175v1
Endosymbiont metacommunities, mtDNA diversity and the evolution of the Bemisia tabaci (Hemiptera: Aleyrodidae) species complex. Gwénaelle Gueguen,Fabrice Vavre,Olivier Gnankine,Michel Peterschmitt,Delphine Charifet al. Molecular Ecology, 2010, 19 (19), pp.4365-4378. ⟨10.1111/j.1365-294X.2010.04775.x⟩ Article dans une revue istex hal-00746855v1
Do variable compensatory mechanisms explain the polymorphism of the dependence phenotype in the Asobara tabida-wolbachia association? Natacha Kremer,Franck Dedeine,Delphine Charif,Cédric Finet,Roland Allemandet al. Evolution - International Journal of Organic Evolution, 2010, 64 (10), pp.2969-79. ⟨10.1111/j.1558-5646.2010.01034.x⟩ Article dans une revue istex hal-00850365v1
Molecular Detection Penetrance and Transmission of an Inherited Virus Responsible for Behavioral Manipulation of an Insect Parasitoid S. Patot,D. Lepetit,D. Charif,Julien Varaldi,Frédéric Fleury Applied and Environmental Microbiology, 2009, 75 (3), pp.703-710. ⟨10.1128/AEM.01778-08⟩ Article dans une revue hal-00428320v1
Wolbachia interferes with ferritin expression and iron metabolism in insects. Natacha Kremer,Denis Voronin,Delphine Charif,Patrick Mavingui,Bertrand Mollereauet al. PLoS Pathogens, 2009, 5 (10), pp.e1000630. ⟨10.1371/journal.ppat.1000630⟩ Article dans une revue hal-00850400v1
A new case of &lt;i&gt;Wolbachia&lt;/i&gt; dependence in the genus &lt;i&gt;Asobara&lt;/i&gt;: evidence for parthenogenesis induction in &lt;i&gt;Asobara japonica&lt;/i&gt; N. Kremer,D. Charif,H. Henri,M. Bataille,G. Prévostet al. Heredity, 2009, 103 (3), pp.248-256. ⟨10.1038/hdy.2009.63⟩ Article dans une revue hal-00428410v1
Identification of the Weevil immune genes and their expression in the bacteriome tissue C. Anselme,V. Perez-Brocal,A. Vallier,C. Vincent-Monégat,D. Charifet al. BMC Biology, 2008, 6, pp.43-55. ⟨10.1186/1741-7007-6-43⟩ Article dans une revue hal-00391128v1
MareyMap: an R-based tool with graphical interface for estimating recombination rates C. Rezvoy,D. Charif,Laurent Guéguen,Gabriel Marais Bioinformatics, 2007, 23, pp.2188-2189 Article dans une revue hal-00434645v1
Interaction between host genotype and environmental conditions affects bacterial density in &lt;i&gt;Wolbachia&lt;/i&gt; symbiosis L. Mouton,H. Henri,D. Charif,M. Boulétreau,F. Vavre Biology Letters, 2007, 3, pp.210-213 Article dans une revue hal-00434634v1
SeqinR 1.0-2: a contributed package to the R project for statistical computing devoted to biological sequences retrieval and analysis D. Charif,J.R. Lobry incollection, 2007, --, pp.207-232 Article dans une revue hal-00434576v1
A Survey of the Bacteriophage WO in the Endosymbiotic Bacteria &lt;i&gt;Wolbachia&lt;/i&gt; L. Gavotte,H. Henri,R. Stouthamer,D. Charif,S. Charlatet al. Molecular Biology and Evolution, 2007, 24, pp.427-435 Article dans une revue hal-00434685v1
Online synonymous codon usage analyses with the ade4 and seqinR packages D. Charif,J. Thioulouse,J.R. Lobry,G. Perrière Bioinformatics, 2005, 21, pp.545-547 Article dans une revue hal-00427727v1

Logiciel (1)

seqinr: Biological Sequences Retrieval and Analysis Delphine Charif,Simon Penel,Jean R Lobry,Anamaria Necsulea 2023, ⟨swh:1:cnt:90d8feea73b421b419e5c3a672f3f4e21a967911;origin=https://github.com/lbbe-software/seqinr;visit=swh:1:snp:960fa7fc68bb841d84b1aa5bcb54bd72e2bfaff7;anchor=swh:1:rev:fffb71ded9892a59ab776bbb52dc0de27fcc7f30;path=/codemeta.json⟩ Logiciel hal-04980512v1

Poster de conférence (3)

RFLOMICS: R package and Shiny interface for integrative analysis of omics data Nadia Bessoltane,Christine Paysant-Le-Roux,Gwendal Cueff,Audrey Hulot,Delphine Charif Rencontres R (2023), Jun 2023, Avignon, France Poster de conférence hal-04524447v1
RFLOMICS: R package and Shiny interface for Integrative analysis of omics data Nadia Bessoltane,Christine Paysant-Le-Roux,Gwendal Cueff,Audrey Hulot,Delphine Charif Journées ouvertes en biologie, informatique et mathématiques (JOBIM), Jul 2022, Rennes, France. Poster de conférence hal-04546139v1
The heat is on : what is the effect of climate change on seed mucilage production in Arabidopsis ? Isabelle Fabrissin,Tudel Cadoret,Delphine Charif,Adeline Berger,Joseph Tranet al. 11èmes Journées du Réseau Français des Parois, Orléans, Jun 2017, Orléans, France Poster de conférence hal-03283970v1

Chapitre d'ouvrage (1)

Identifying and isolating meiotic mutants in a polyploid brassica crop Marina Pfalz,Adrián Gonzalo,Nicolas Christophorou,Aurélien Blary,Aurélie Berardet al. Mónica Pradillo; Stefan Heckmann. Plant Meiosis : methods and protocols, 2061, Humana, 405 p., 2020, Methods in Molecular Biology, 978-1-4939-9817-3 ; 978-1-4939-9818-0. ⟨10.1007/978-1-4939-9818-0_21⟩ Chapitre d'ouvrage hal-02912375v1

Communication dans un congrès (6)

The contribution of mucilage to seed longevity and how the maternal environment influences it production Isabelle Fabrissin,N Sano,Tudel Cadoret,Delphine Charif,Boris Colletet al. International Society of Seed Science 6th workshop on the molecular aspects of seed dormancy and germination, International Society for Seed Science, Sep 2019, Volendam, Netherlands Communication dans un congrès hal-03290786v1
Translational research into meiotic recombination: more than mere validations Adrian Gonzalo,Aurelien Blary,Nicolas Christophorou,Marina Pfalz,Nadia Bessoltane-Bentaharet al. 21th Crucifer Genetics Conference, Jul 2018, Saint Malo, France Communication dans un congrès hal-04507637v1
Predicting the influence of climate induced temperature changes on the production of polysaccharides in Arabidopsis seed mucilage H.M. North,M.C. Ralet,A. Berger,Tudel Cadoret,Christine Salleet al. VIII Cell Wall Research Conference, Jun 2018, Asilomar, United States Communication dans un congrès hal-02609211v1
The contribution of mucilage to seed life expectancy and how the maternal environment influences its production Isabelle Fabrissin,Tudel Cadoret,Delphine Charif,Boris Collet,N Sanoet al. France-Japan GDRI-Integrative Plant Biology, Oct 2017, Lyon, France Communication dans un congrès hal-03284112v1
Are there common host functions involved in insect symbioses ? A comparative transcriptomic approach Fabrice Vavre,Delphine Charif,Patrick Mavingui,Didier Bouchon,Abdelaziz Heddi COST Action FA0701 "Arthropod Symbioses: from fundamental studies to pest and disease management", European Cooperation in Science and Technology (COST). Bruxelles, BEL., Jan 2010, Funchal, Portugal. n. p Communication dans un congrès hal-02818416v1
Molecular and immune particularities of the weevil's bacteriome Aurélien Vigneron,D. Charif,Severine Balmand,Abdelaziz Heddi Immuninv 2009, 2009, France Communication dans un congrès hal-00497061v1