Thomas Derrien

Documents

Publications

	Storing the declaration of human rights on one data DNA molecule Gouenou Coatrieux , Chloé Berton , Elsa Dupraz , Belaid Hamoum , Thomas Derrien CominLabs day 2022, Oct 2022, Rennes, France. pp.1-1 Conference poster hal-03817852v1
	Integrative analyses of chromosome conformation, chromatin accessibility and gene expression in human and livestock genomes Camille Mestre , Sarah Djebali Quelen , Thomas Faraut , Nathalie Vialaneix , Andrea Rau European Conference on Computational Biology (ECCB 2018), Sep 2018, Athènes, Greece. , 2018 Conference poster hal-02784857v1
	Profiling the landscape of transcription, chromatin accessibility and chromosome conformation of cattle, pig, chicken and goat genomes [FAANG pilot project] Sylvain Foissac , Sarah Djebali Quelen , Hervé Acloque , Philippe Bardou , Fany Blanc 36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book Conference poster hal-01608449v1
	Integrative and differential analysis of transcriptomes and chromatin accessibility regions reveals regulatory mechanisms involved in pig immune and metabolic functions Sarah Djebali Quelen , Kylie Munyard , Nathalie Villa-Vialaneix , Cédric Cabau , Andrea Rau 36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book Conference poster hal-01603033v1
	Long-non coding RNAs repertoires in liver and two T lymphocyte cell types in four livestock species Kévin Muret , Sarah Djebali Quelen , Thomas Derrien , Cédric Cabau , Christophe Klopp 36. Conference of the International Society for Animal Genetics (ISAG), Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book Conference poster hal-01621915v1
	Une nouvelle facette du génome de poule : les genes “longs non-codants" Kévin Muret , Christophe Klopp , Valentin Wucher , Diane Esquerre , Fabrice Legeai 12. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Apr 2017, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 2017, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras Conference poster hal-01605848v1
	Long-non coding RNAs repertoire in liver and adipose tissue in chicken Kévin Muret , Christophe Klopp , Valentin Wucher , Diane D. Esquerre , Fabrice Legeai XXIV International Plant & Animal Genome (Pag), Jan 2016, San Diego, United States. 2016 Conference poster hal-02799305v1

	LncRNAs in domesticated animals: from dog to livestock species Sandrine Lagarrigue , Matthias Lorthiois , Fabien Degalez , David Gilot , Thomas Derrien Mammalian Genome, 2022, 33 (2), pp.248-270. ⟨10.1007/s00335-021-09928-7⟩ Journal articles hal-03467210v1
	Canine Oral Melanoma Genomic and Transcriptomic Study Defines Two Molecular Subgroups with Different Therapeutical Targets Anais Prouteau , Stephanie Mottier , Aline Primot , Edouard Cadieu , Laura Bachelot Cancers, 2022, 14 (2), pp.276. ⟨10.3390/cancers14020276⟩ Journal articles hal-03555450v1
	Natural and human-driven selection of a single non-coding body size variant in ancient and modern canids Jocelyn Plassais , Bridgett M Vonholdt , Heidi G Parker , Alberto Carmagnini , Nicolas Dubos Current Biology - CB, 2022, 32 (4), pp.889-897.e9. ⟨10.1016/j.cub.2021.12.036⟩ Journal articles hal-03555249v1
	Circulating tumor DNA is detectable in canine histiocytic sarcoma, oral malignant melanoma, and multicentric lymphoma Anaïs Prouteau , Jérôme Alexandre Denis , Pauline de Fornel , Edouard Cadieu , Thomas Derrien Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-020-80332-y⟩ Journal articles hal-03110876v1
	Long-read assembly of a Great Dane genome highlights the contribution of GC-rich sequence and mobile elements to canine genomes Julia Halo , Amanda L. Pendleton , Feichen Shen , Aurelien J. Doucet , Thomas Derrien Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (11), ⟨10.1073/pnas.2016274118⟩ Journal articles hal-03206721v1
	Identification of common predisposing loci to hematopoietic cancers in four dog breeds Benoit Hedan , Edouard Cadieu , Maud Rimbault , Amaury Vaysse , Caroline Dufaure de Citres PLoS Genetics, 2021, 17 (4), pp.e1009395. ⟨10.1371/journal.pgen.1009395⟩ Journal articles hal-03215819v1
	PTPN11 mutations in canine and human disseminated histiocytic sarcoma Benoit Hedan , Mélanie Rault , Jérôme Abadie , Ronan Ulvé , Nadine Botherel International Journal of Cancer, 2020, 147 (6), pp.1657-1665. ⟨10.1002/ijc.32991⟩ Journal articles hal-02534873v1
	An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues Frédéric Jehl , Kévin Muret , Maria Bernard , Morgane Boutin , Laetitia Lagoutte Scientific Reports, 2020, 10 (1), pp.1-17. ⟨10.1038/s41598-020-77586-x⟩ Journal articles hal-03039897v1
	Prognostic value of somatic focal amplifications on chromosome 30 in canine oral melanoma Anaïs Prouteau , Florian Chocteau , Clotilde de Brito , Edouard Cadieu , Aline Primot Veterinary and Comparative Oncology, 2020, 18 (2), pp.214-223. ⟨10.1111/vco.12536⟩ Journal articles hal-02280596v1
	Identification of a Missense Variant in MFSD12 Involved in Dilution of Phaeomelanin Leading to White or Cream Coat Color in Dogs Benoit Hedan , Edouard Cadieu , Nadine Botherel , Caroline Dufaure de Citres , Anna Letko Genes, 2019, 10 (5), pp.E386. ⟨10.3390/genes10050386⟩ Journal articles hal-02153481v1
	Multi-species annotation of transcriptome and chromatin structure in domesticated animals Sylvain Foissac , Sarah Djebali , Kylie Munyard , Nathalie Vialaneix , Andrea Rau BMC Biology, 2019, 17 (1), 25 p. ⟨10.1186/s12915-019-0726-5⟩ Journal articles hal-02437599v1
	Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules Camille Sessegolo , Corinne Cruaud , Corinne da Silva , Audric Cologne , Marion Dubarry Scientific Reports, 2019, 9 (1), pp.14908. ⟨10.1038/s41598-019-51470-9⟩ Journal articles hal-02335574v1
	Genome-Wide Analysis of Long Non-Coding RNA Profiles in Canine Oral Melanomas Christophe Hitte , Céline Le Béguec , Edouard Cadieu , Valentin Wucher , Aline Primot Genes, 2019, 10 (6), pp.E:477. ⟨10.3390/genes10060477⟩ Journal articles hal-02179210v1
	Characterisation and functional predictions of canine long non-coding RNAs Celine Le Beguec , Valentin Wucher , Laetitia Lagoutte , Edouard Cadieul , Nadine Botherel Scientific Reports, 2018, 8 (1), pp.13444. ⟨10.1038/s41598-018-31770-2⟩ Journal articles hal-01888670v1
	Erratum to: Bioinformatics Pipeline for Transcriptome Sequencing Analysis Sarah Djebali , Valentin Wucher , Sylvain Foissac , Christophe Hitte , Erwan Corre Methods in Molecular Biology, 2017, 1468, pp.E1. ⟨10.1007/978-1-4939-4035-6_17⟩ Journal articles hal-01439359v1
	FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome Valentin Wucher , Fabrice Legeai , Benoit Hedan , Guillaume Rizk , Laëtitia Lagoutte Nucleic Acids Research, 2017, 45 (8), pp.12. ⟨10.1093/nar/gkw1306⟩ Journal articles hal-01532061v1
	Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species Thomas C. Mathers , Yazhou Chen , Gemy Kaithakottil , Fabrice Legeai , Sam T. Mugford Genome Biology, 2017, 18 (1), pp.27. ⟨10.1186/s13059-016-1145-3⟩ Journal articles hal-01500475v1
	Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species Thomas C. Mathers , Yazhou Chen , Gemy Kaithakottil , Fabrice Legeai , Sam T. Mugford Genome Biology, 2017, 18 (1), pp.63. ⟨10.1186/s13059-017-1202-6⟩ Journal articles hal-01588181v1
	Long noncoding RNA repertoire in chicken liver and adipose tissue Kévin Muret , Christophe Klopp , Valentin Wucher , Diane Esquerré , Fabrice Legeai Genetics Selection Evolution, 2017, 49 (1), pp.6. ⟨10.1186/s12711-016-0275-0⟩ Journal articles hal-01431420v1
	An exome sequencing based approach for genome-wide association studies in the dog Bart J. G. Broeckx , Thomas Derrien , Stephanie Mottier , Valentin Wucher , Edouard Cadieu Scientific Reports, 2017, 7 (1), pp.15680. ⟨10.1038/s41598-017-15947-9⟩ Journal articles hal-01659287v1
	Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus Alexandre Cormier , Komlan Avia , Lieven Sterck , Thomas Derrien , Valentin Wucher New Phytologist, 2017, 214 (1), pp.219-232. ⟨10.1111/nph.14321⟩ Journal articles hal-03145812v1
	Discovery of Human-Similar Gene Fusions in Canine Cancers Ronan Ulvé , Mélanie Rault , Mathieu Bahin , Laetitia Lagoutte , Jérôme Abadie Cancer Research, 2017, 77 (21), pp.5721-5727. ⟨10.1158/0008-5472.CAN-16-2691⟩ Journal articles hal-01647128v1
	A DOG SPONTANEOUS MODEL FOR HUMAN SENSORY NEUROPATHIES: IDENTIFICATION OF A MUTATION IN THE UPSTREAM REGION OF A NEUROTROPHIC FACTOR S. Correard , J. Plassais , L. Lagoutte , M. Paradis , E. Guaguere Bulletin de l'Académie Vétérinaire de France, 2016, 21 (3), pp.289--290. ⟨10.4267/2042/61953⟩ Journal articles hal-01415930v1
	A Point Mutation in a lincRNA Upstream of GDNF Is Associated to a Canine Insensitivity to Pain: A Spontaneous Model for Human Sensory Neuropathies Jocelyn Plassais , Laetitia Lagoutte , Solenne Correard , Manon Paradis , Eric Guaguère PLoS Genetics, 2016, 12 (12), pp.e1006482. ⟨10.1371/journal.pgen.1006482⟩ Journal articles hal-01439364v1
	Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes Bart J. G. Broeckx , Christophe Hitte , Frank Coopman , Geert E. C. Verhoeven , Sarah de Keulenaer Scientific Reports, 2015, 5 (1), pp.12810. ⟨10.1038/srep12810⟩ Journal articles hal-01187322v1
	Identification of long non-coding RNAs in insects genomes Fabrice Legeai , Thomas Derrien Current Opinion in Insect Science, 2015, 7, pp.37 - 44. ⟨10.1016/j.cois.2015.01.003⟩ Journal articles hal-01240461v1
	Assessment of transcript reconstruction methods for RNA-seq. Tamara Steijger , Josep F Abril , Pär G Engström , Felix Kokocinski , Martin Akerman Nature Methods, 2013, 10 (12), pp.1177-1184. ⟨10.1038/nmeth.2714⟩ Journal articles hal-00909081v1
	Annotation of the domestic dog genome sequence: finding the missing genes. Thomas Derrien , Amaury Vaysse , Catherine André , Christophe Hitte Mammalian Genome, 2012, 23 (1-2), pp.124-31. ⟨10.1007/s00335-011-9372-0⟩ Journal articles inserm-00643182v1
	Fast computation and applications of genome mappability. Thomas Derrien , Jordi Estellé , Santiago Marco Sola , David G. Knowles , Emanuele Raineri PLoS ONE, 2012, 7 (1), pp.e30377. ⟨10.1371/journal.pone.0030377⟩ Journal articles inserm-00664289v1
	Landscape of transcription in human cells Sarah Djebali , Carrie A. Davis , Angelika Merkel , Alex Dobin , Timo Lassmann Nature, 2012, 489 (7414), pp.101-108. ⟨10.1038/nature11233⟩ Journal articles hal-01216755v1
	The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression Thomas Derrien , Rory Johnson , Giovanni Bussotti , Andrea Tanzer , Sarah Djebali Genome Research, 2012, 22, pp.1775-1789. ⟨10.1101/gr.132159.111⟩ Journal articles hal-01205054v1
	Des longs ARN non codants humains activateurs de la transcription des gènes. [Long non-coding RNAs with enhancer-like function in human cells]. Thomas Derrien , Roderic Guigó Médecine/Sciences, 2011, 27 (4), pp.359-61. ⟨10.1051/medsci/2011274009⟩ Journal articles inserm-00589934v1
	Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping. Amaury Vaysse , Abhirami Ratnakumar , Thomas Derrien , Erik Axelsson , Gerli Rosengren Pielberg PLoS Genetics, 2011, 7 (10), pp.e1002316. ⟨10.1371/journal.pgen.1002316⟩ Journal articles inserm-00638834v1
	Long noncoding RNAs with enhancer-like function in human cells Thomas Derrien , Malte Beringer , Kiranmai Gumireddy , Alessandro Gardini , Giovanni Bussotti Cell, 2010, 143 (1), pp.46-58. ⟨10.1016/j.cell.2010.09.001⟩ Journal articles hal-02668720v1
	Revisiting the missing protein-coding gene catalog of the domestic dog. Thomas Derrien , Julien Thézé , Amaury Vaysse , Catherine André , Elaine A. Ostrander BMC Genomics, 2009, 10 (1), pp.62. ⟨10.1186/1471-2164-10-62⟩ Journal articles inserm-00366111v1
	A comparative genome approach to marker ordering Thomas Faraut , Simon de Givry , Patrick P. Chabrier , Thomas Derrien , Francis Galibert Bioinformatics, 2007, 23 (2), pp.E50-E56. ⟨10.1093/bioinformatics/btl321⟩ Journal articles hal-02667668v1
	Coat colour in dogs: identification of the merle locus in the Australian shepherd breed Benoit Hédan , Sébastien Corre , Christophe Hitte , Stéphane Dréano , Thierry Vilboux BMC Veterinary Research, 2006, 2, pp.9. ⟨10.1186/1746-6148-2-9⟩ Journal articles hal-01068391v1

	An atlas of chicken long non-coding RNAs gathering multiple sources : gene models and expression across more than twenty tissues Frédéric Jehl , Kévin Muret , Maria Bernard , Diane Esquerré , Hervé Acloque PAG XXVII - Plant & Animal Genome Conference, Jan 2019, San Diego, United States Conference papers hal-02790912v1
	Integrative genomics and gene networks for studying phenotypic plasticity in the pea aphid Valentin Wucher , Fabrice Legeai , Lucas Bourneuf , Thomas Derrien , Aurore Gallot 10th Arthropod Genomics Symposium, Jun 2017, Notre Dame, United States Conference papers hal-01566438v1
	Pig chromosome X long non-coding RNA annotation and expression Sarah Djebali , Oana Palasca , Christian Anton , Thomas Derrien , Ole Madsen PAG XXV - Plant and Animal Genome Conference, Jan 2017, San Diego, United States Conference papers hal-02788116v1
	292 Lymphomas in dogs: spontaneous models to decipher the genetics of lymphomagenesis and new therapeutic options in dogs and humans R. Ulvé , B. Hédan , M. Bahin , Thomas Derrien , C. De Brito International Conference on Malignant Lymphoma, Jun 2015, Lugano, Switzerland. pp.245, ⟨10.1002/hon.2229⟩ Conference papers hal-01163617v1
	Long non-‐coding RNA in the pea aphid; identification and comparative expression in sexual and asexual embryos Fabrice Legeai , Thomas Derrien , Valentin Wucher , David Audrey , Gaël Le Trionnaire Arthropod Genomics Symposium, Jun 2014, Urbana, United States Conference papers hal-01091304v1
	Numerical Analysis of LIPSS Coverage of Silicon Upon Irradiation with Multiple Double-fs-Pulse Sequences: The Impact of Carriers and Cumulative Effects Thomas Derrien , J. Krüger , Tatiana Itina , S. Höhm , Arkadi Rosenfeld 12th International Conference on Laser Ablation, COLA 2013, Ischia, Italy 6-11 October 2013, Oct 2013, Ischia, Italy. page 126 O-49 Conference papers ujm-00878679v1
	Characterization of black silicon structural and electrical properties for photovoltaics applications R. Torres , Thomas Derrien , V. Vervisch , Mathieu Halbwax , F. Torregrosa European Materials Research Society Spring Meeting, E-MRS Spring 2010, Symposium I : Advanced silicon materials research for electronic and photovoltaic applications II, 2010, Strasbourg, France Conference papers hal-00574120v1
	Study on laser-induced periodic structures and photovoltaic application R. Torres , T.E. Itina , V. Vervisch , Mathieu Halbwax , Thomas Derrien International Symposium on High-Power Laser Ablation, HPLA 2010, 2010, United States. pp.576-581, ⟨10.1063/1.3507149⟩ Conference papers hal-00568639v1
	Laser Applications for Nanotechnology : Insights From Numerical Modeling Tatiana Itina , Nikita Shcheblanov , Jean-Philippe Colombier , Razvan Stoian , Eric Audouard SPIE, High Power Laser Ablation, Apr 2010, Santa Fe, United States Conference papers ujm-00487302v1
	Evaluation of Luminosity Reduction in the ILC Head-on Scheme from Parasitic Collisions J. Brossard , P. Bambade , P. Dadoun , Thomas Derrien , M.C. Alabau-Pons 22nd Particle Accelerator Conference 07 (PAC'07), Jun 2007, Albuquerque, United States. pp.THPMN008 Conference papers in2p3-00170819v1

	L'analyse comparée des génomes : applications à l'identification de nouveaux gènes canins Thomas Derrien Bio-informatique [q-bio.QM]. Université Rennes 1, 2007. Français. ⟨NNT : ⟩ Theses tel-00656330v1

	nBioinformatics Pipeline for Transcriptome Sequencing Analysis Sarah Djebali , Valentin Wucher , Sylvain Foissac , Christophe Hitte , Erwan Corre Enhancer RNAs : Methods and Protocols, 1468 (Chapter 14), Humana Press Inc., 2017, Methods in Molecular Biology, 978-1-4939-4033-2. ⟨10.1007/978-1-4939-4035-6_14⟩ Book sections hal-02788591v1
	Bioinformatics Pipeline for Transcriptome Sequencing Analysis Sarah Djebali , Valentin Wucher , Sylvain Foissac , Christophe Hitte , Erwan Corre Enhancer RNAs - Methods and Protocols, 1468, Editions Springer, pp.E1-E1, 2017, Methods in Molecular Biology, 978-1-4939-4035-6. ⟨10.1007/978-1-4939-4035-6⟩ Book sections hal-02789209v1

	A clonally reproducing generalist aphid pest colonises diverse host plants by rapid transcriptional plasticity of duplicated gene clusters Thomas Mathers , Yazhou Chen , Gemy Kaithakottil , Fabrice Legeai , Sam Mugford 2020 Preprints, Working Papers, ... hal-02936181v1
	Long-read assembly of a Great Dane genome highlights the contribution of GC-rich sequence and mobile elements to canine genomes Julia Halo , Amanda Pendleton , Feichen Shen , Aurélien Doucet , Thomas Derrien 2020 Preprints, Working Papers, ... hal-03007309v1
	Interest of circulating tumor DNA as a biomarker for canine cancers: illustration in histiocytic sarcoma, oral malignant melanoma and multicentric lymphoma Anaïs Prouteau , Jérôme Alexandre Denis , Pauline de Fornel , Edouard Cadieu , Thomas Derrien 2020 Preprints, Working Papers, ... hal-03007320v1
	The tree that hides the forest: identification of common predisposing loci in several hematopoietic cancers and several dog breeds Benoit Hédan , Edouard Cadieu , Maud Rimbault , Amaury Vaysse , Patrick Devauchelle 2020 Preprints, Working Papers, ... hal-03007317v1
	Livestock genome annotation: transcriptome and chromatin structure profiling in cattle, goat, chicken and pig Sylvain Foissac , Sarah Djebali , Kylie Munyard , Nathalie Vialaneix , Andrea Rau 2018 Preprints, Working Papers, ... hal-02791029v1

Thomas Derrien

Publications

Storing the declaration of human rights on one data DNA molecule

Integrative analyses of chromosome conformation, chromatin accessibility and gene expression in human and livestock genomes

Profiling the landscape of transcription, chromatin accessibility and chromosome conformation of cattle, pig, chicken and goat genomes [FAANG pilot project]

Integrative and differential analysis of transcriptomes and chromatin accessibility regions reveals regulatory mechanisms involved in pig immune and metabolic functions

Long-non coding RNAs repertoires in liver and two T lymphocyte cell types in four livestock species

Une nouvelle facette du génome de poule : les genes “longs non-codants"

Long-non coding RNAs repertoire in liver and adipose tissue in chicken

LncRNAs in domesticated animals: from dog to livestock species

Canine Oral Melanoma Genomic and Transcriptomic Study Defines Two Molecular Subgroups with Different Therapeutical Targets

Natural and human-driven selection of a single non-coding body size variant in ancient and modern canids

Circulating tumor DNA is detectable in canine histiocytic sarcoma, oral malignant melanoma, and multicentric lymphoma

Long-read assembly of a Great Dane genome highlights the contribution of GC-rich sequence and mobile elements to canine genomes

Identification of common predisposing loci to hematopoietic cancers in four dog breeds

PTPN11 mutations in canine and human disseminated histiocytic sarcoma

An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues

Prognostic value of somatic focal amplifications on chromosome 30 in canine oral melanoma

Identification of a Missense Variant in MFSD12 Involved in Dilution of Phaeomelanin Leading to White or Cream Coat Color in Dogs

Multi-species annotation of transcriptome and chromatin structure in domesticated animals

Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules

Genome-Wide Analysis of Long Non-Coding RNA Profiles in Canine Oral Melanomas

Characterisation and functional predictions of canine long non-coding RNAs

Erratum to: Bioinformatics Pipeline for Transcriptome Sequencing Analysis

FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome

Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

Long noncoding RNA repertoire in chicken liver and adipose tissue

An exome sequencing based approach for genome-wide association studies in the dog

Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus

Discovery of Human-Similar Gene Fusions in Canine Cancers

A DOG SPONTANEOUS MODEL FOR HUMAN SENSORY NEUROPATHIES: IDENTIFICATION OF A MUTATION IN THE UPSTREAM REGION OF A NEUROTROPHIC FACTOR

A Point Mutation in a lincRNA Upstream of GDNF Is Associated to a Canine Insensitivity to Pain: A Spontaneous Model for Human Sensory Neuropathies

Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes

Identification of long non-coding RNAs in insects genomes

Assessment of transcript reconstruction methods for RNA-seq.

Annotation of the domestic dog genome sequence: finding the missing genes.

Fast computation and applications of genome mappability.

Landscape of transcription in human cells

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

Des longs ARN non codants humains activateurs de la transcription des gènes. [Long non-coding RNAs with enhancer-like function in human cells].

Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping.

Long noncoding RNAs with enhancer-like function in human cells

Revisiting the missing protein-coding gene catalog of the domestic dog.

A comparative genome approach to marker ordering

Coat colour in dogs: identification of the merle locus in the Australian shepherd breed

An atlas of chicken long non-coding RNAs gathering multiple sources : gene models and expression across more than twenty tissues

Integrative genomics and gene networks for studying phenotypic plasticity in the pea aphid

Pig chromosome X long non-coding RNA annotation and expression

292 Lymphomas in dogs: spontaneous models to decipher the genetics of lymphomagenesis and new therapeutic options in dogs and humans

Long non-­‐coding RNA in the pea aphid; identification and comparative expression in sexual and asexual embryos

Numerical Analysis of LIPSS Coverage of Silicon Upon Irradiation with Multiple Double-fs-Pulse Sequences: The Impact of Carriers and Cumulative Effects

Characterization of black silicon structural and electrical properties for photovoltaics applications

Study on laser-induced periodic structures and photovoltaic application

Laser Applications for Nanotechnology : Insights From Numerical Modeling

Evaluation of Luminosity Reduction in the ILC Head-on Scheme from Parasitic Collisions

L'analyse comparée des génomes : applications à l'identification de nouveaux gènes canins

nBioinformatics Pipeline for Transcriptome Sequencing Analysis

Bioinformatics Pipeline for Transcriptome Sequencing Analysis

A clonally reproducing generalist aphid pest colonises diverse host plants by rapid transcriptional plasticity of duplicated gene clusters

Long-read assembly of a Great Dane genome highlights the contribution of GC-rich sequence and mobile elements to canine genomes

Interest of circulating tumor DNA as a biomarker for canine cancers: illustration in histiocytic sarcoma, oral malignant melanoma and multicentric lymphoma

The tree that hides the forest: identification of common predisposing loci in several hematopoietic cancers and several dog breeds

Livestock genome annotation: transcriptome and chromatin structure profiling in cattle, goat, chicken and pig

Long non-‐coding RNA in the pea aphid; identification and comparative expression in sexual and asexual embryos