Etienne Birmele Professeur à l'Université de Strasbourg, UFR Math-Info et IRMA, équipe de Statistique

Publications

Article dans une revue (27)

Accelerated epigenetic aging in Huntington’s disease involves polycomb repressive complex 1 Baptiste Brulé,Rafael Alcalá-Vida,Noémie Penaud,Jil Scuto,Coline Mounieret al. Nature Communications, 2025, 16 (1), pp.1550. ⟨10.1038/s41467-025-56722-z⟩ Article dans une revue hal-05077217v1
LSTM and Transformers based methods for Remaining Useful Life Prediction considering Censored Data Jean-Pierre Noot,Mikaël Martin,Etienne Birmelé International Journal of Prognostics and Health Management, 2025, 16 (2), ⟨10.36001/ijphm.2025.v16i2.4260⟩ Article dans une revue hal-05211669v1
Detection of COPD exacerbations with continuous monitoring of breathing rate and inspiratory amplitude under oxygen therapy Juliana Alves Pegoraro,Antoine Guerder,Thomas Similowski,Philippe Salamitou,Jesus Gonzalez-Bermejoet al. BMC Medical Informatics and Decision Making, 2025, 25 (1), pp.101. ⟨10.1186/s12911-025-02939-3⟩ Article dans une revue hal-05211620v1
Consensus gene modules strategy identifies candidate blood-based biomarkers for primary Sjogren's disease Cheïma Boudjeniba,Perrine Soret,Diana Trutschel,Antoine Hamon,Valentin Balocheet al. Clinical Immunology, 2023, 264, pp.110241. ⟨10.1101/2023.07.05.23292036⟩ Article dans une revue pasteur-04250559v1
Identification of Deregulated Mechanisms Specific to Bladder Cancer Subtypes Magali Champion,Julien Chiquet,Pierre Neuvial,Mohamed Elati,François Radvanyiet al. Journal of Bioinformatics and Computational Biology, 2021, 19 (1), ⟨10.1142/S0219720021400035⟩ Article dans une revue hal-03079966v1
The Transposable Element Environment of Human Genes Differs According to Their Duplication Status and Essentiality Margot Correa,Emmanuelle Lerat,Etienne E. Birmelé,Franck Samson,Bérengère Bouillonet al. Genome Biology and Evolution, 2021, 13 (5), ⟨10.1093/gbe/evab062⟩ Article dans une revue hal-03367114v1
Machine-learning based feature selection for a non-invasive breathing change detection Juliana Alves Pegoraro,Sophie Lavault,Nicolas Wattiez,Thomas Similowski,Jésus Gonzalez-Bermejoet al. BioData Mining, 2021, 14 (1), ⟨10.1186/s13040-021-00265-8⟩ Article dans une revue hal-03292741v1
Predicting breast cancer metastasis from whole-blood transcriptomic measurements Einar Holsbø,Vittorio Perduca,Lars Ailo Ailo Bongo,Eiliv Lund,Etienne Birmele BMC Research Notes, 2020, 13 (1), ⟨10.1186/s13104-020-05088-0⟩ Article dans une revue hal-02872374v1
Causal mediation analysis in presence of multiple mediators uncausally related Allan Jérolon,Laura Baglietto,Etienne Birmelé,Flora Alarcon,Vittorio Perduca The international journal of biostatistics, 2020, 17, pp.191 - 221. ⟨10.1515/ijb-2019-0088⟩ Article dans une revue hal-03923960v1
On the Minimum Eccentricity Isometric Cycle Problem Etienne Birmele,Fabien de Montgolfier,Léo Planche Electronic Notes in Theoretical Computer Science, 2019, 346, pp.159-169. ⟨10.1016/j.entcs.2019.08.015⟩ Article dans une revue hal-02430756v1
A model for gene deregulation detection using expression data Thomas Picchetti,Julien Chiquet,Mohamed Elati,Pierre Neuvial,Rémy Nicolleet al. BMC Systems Biology, 2015, 9, ⟨10.1186/1752-0509-9-S6-S6⟩ Article dans une revue hal-01154154v2
Model Selection in Overlapping Stochastic Block Models Pierre Latouche,Etienne E. Birmelé,Christophe Ambroise Electronic Journal of Statistics , 2014, 8, pp.762-794. ⟨10.1214/14-EJS903⟩ Article dans une revue hal-00990277v1
Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure Paulo Vieira Milreu,Cecilia Coimbra Klein,Ludovic Cottret,Vicente Acuña,Etienne E. Birmeléet al. Bioinformatics, 2014, 30 (1), pp.61-70. ⟨10.1093/bioinformatics/btt597⟩ Article dans une revue hal-00922567v1
Variational Bayesian Inference and Complexity Control for Stochastic Block Models Pierre Latouche,Etienne E. Birmelé,Christophe Ambroise Statistical Modelling, 2012, 12 (1), pp.93-115. ⟨10.1177/1471082X1001200105⟩ Article dans une revue hal-00624536v1
Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets Vicente Acuña,Etienne Birmelé,Ludovic Cottret,Pierluigi Crescenzi,Fabien Jourdanet al. Theoretical Computer Science, 2012, 457, pp.1--9. ⟨10.1016/j.tcs.2012.07.023⟩ Article dans une revue hal-00764025v1
Detecting local network motifs Etienne Birmele Electronic Journal of Statistics , 2012, 6, pp.908-933. ⟨10.1214/12-EJS698⟩ Article dans une revue hal-00726215v1
OVERLAPPING STOCHASTIC BLOCK MODELS WITH APPLICATION TO THE FRENCH POLITICAL BLOGOSPHERE Pierre Latouche,Etienne Birmelé,Christophe Ambroise Annals of Applied Statistics, 2011, 5 (1), pp.309 - 336. ⟨10.1214/10-AOAS382⟩ Article dans une revue hal-02652556v1
Analyse du nombre de perturbations lors du maintien d'un arbre de connexion de faible diamètre Etienne Birmele,François Delbot,Christian Laforest Revue des Sciences et Technologies de l'Information - Série TSI : Technique et Science Informatiques, 2011, 30 (7), pp.781--808. ⟨10.3166/tsi.30.781-808⟩ Article dans une revue istex hal-00730900v1
Tree-width of graphs without a 3 by 3 graph minor Etienne Birmele,Adrian Bondy,Bruce Reed Discrete Applied Mathematics, 2009, 157 (12), pp.2577-2596 Article dans une revue hal-00730791v1
A scale-free graph model based on bipartite graphs Etienne Birmele Discrete Applied Mathematics, 2009, 157 (10), pp.2267-2284. ⟨10.1016/j.dam.2008.06.052⟩ Article dans une revue istex hal-00730793v1
Mean analysis of an online algorithm for the vertex cover problem Etienne Birmele,François Delbot,Christian Laforest Information Processing Letters, 2009, 109 (9), pp.436--439. ⟨10.1016/j.ipl.2008.12.021⟩ Article dans une revue istex hal-00730897v1
Identification of functional modules based on transcriptional regulation structure Etienne Birmele,Mohamed Elati,Céline Rouveirol,Christophe Ambroise BMC Proceedings, 2008, 2 (4), pp.S4 Article dans une revue hal-00730904v1
Every longest circuit of a $3$-connected, $K_ {3,3}$-minor free graph has a chord Etienne Birmele Journal of Graph Theory, 2008, pp.293-298 Article dans une revue hal-00730767v1
The Erdos-Posa property for long circuits Etienne Birmele,Adrian Bondy,Bruce Reed Combinatorica, 2007, pp.135-145 Article dans une revue hal-00730773v1
Arc-chromatic number of digraphs in which every vertex has bounded outdegree or bounded indegree Stéphane Bessy,Etienne E. Birmelé,Frédéric Havet Journal of Graph Theory, 2006, 53 (4), pp.315-332. ⟨10.1002/jgt.20189⟩ Article dans une revue lirmm-00153978v1
Network motifs : mean and variance for the count Catherine Matias,Sophie S. Schbath,Etienne Birmelé,Jean-Jacques J.-J. Daudin,Stephane S. Robin REVSTAT - Statistical Journal, 2006, 4 (1), pp.31-51 Article dans une revue hal-02655236v1
Tree-width and circumference of graphs Etienne Birmele Journal of Graph Theory, 2003, pp.24-25 Article dans une revue hal-00730764v1

Communication dans un congrès (14)

Change point detection method for estimating the remaining useful lifetime of engine filters Jean-Pierre Noot,Mikaël Martin,Etienne Birmelé CIMAC 2025, May 2025, Zurich, Switzerland. ⟨10.5281/zenodo.15517911⟩ Communication dans un congrès hal-05212213v1
Identification of deregulated transcription factors involved in subtypes of cancers Magali Champion,Julien Chiquet,Pierre Neuvial,Mohamed Elati,François Radvanyiet al. Proceedings of the 12th International Conference on Bioinformatics and Computational Biology, Mar 2020, SAN FRANCISCO, United States. pp.1--10, ⟨10.29007/v7qj⟩ Communication dans un congrès hal-01516892v2
Decomposing a Graph into Shortest Paths with Bounded Eccentricity Etienne E. Birmelé,Fabien de Montgolfier,Léo Planche,Laurent Viennot 28th International Symposium on Algorithms and Computation (ISAAC 2017), Dec 2017, Phuket, Thailand. ⟨10.4230/LIPIcs.ISAAC.2017.15⟩ Communication dans un congrès hal-01671718v1
Minimum Eccentricity Shortest Path Problem: An Approximation Algorithm and Relation with the k-Laminarity Problem Etienne E. Birmelé,Fabien de Montgolfier,Léo Planche COCOA 2016, Combinatorial Optimization and Applications - 10th International Conference, Dec 2016, Hong Kong, China. pp.216 - 229, ⟨10.1007/978-3-319-48749-6_16⟩ Communication dans un congrès hal-01424469v1
Incremental complexity of a bi-objective hypergraph transversal problem Ricardo Andrade,Etienne E. Birmelé,Arnaud Mary,Thomas Picchetti,Marie-France Sagot Fundamentals of Computation Theory (FCT2015), Aug 2015, Gdansk, Poland. pp.202-213, ⟨10.1007/978-3-319-22177-9_16⟩ Communication dans un congrès hal-01149392v1
Optimal Listing of Cycles and st-Paths in Undirected Graphs Etienne E. Birmelé,Rui Ferreira,Roberto Grossi,Andrea Marino,Nadia Pisantiet al. 24th Annual ACM-SIAM Symposium on Discrete Algorithms, Jan 2013, New Orleans, United States Communication dans un congrès hal-00751345v1
Efficient Bubble Enumeration in Directed Graphs Etienne E. Birmelé,Pierluigi Crescenzi,Rui Ferreira,Roberto Grossi,Vincent Lacroixet al. String Processing and Information Retrieval (SPIRE), Oct 2012, Cartagena, Colombia. pp.118-129, ⟨10.1007/978-3-642-34109-0_13⟩ Communication dans un congrès hal-00738927v1
NeMo: Fast Count and Statistical Significance of Network Motifs Michel M. Koskas,Gilles G. Grasseau,Etienne E. Birmelé,Sophie S. Schbath,Stephane S. Robin MARAMI 2011 : 2. Conférence sur les Modèles et l'Analyse des Réseaux : Approches Mathématiques et Informatique, Oct 2011, Grenoble, France. n.p Communication dans un congrès hal-00999907v1
Telling Stories Vicente Acuña,Etienne Birmele,Ludovic Cottret,Pierluigi Crescenzi,Fabien Jourdanet al. ICALP 2011 satellite workshop: Graph Algorithms and Applications (GA), 2011, Zurich, Switzerland. ⟨10.1016/j.tcs.2012.07.023⟩ Communication dans un congrès hal-00748788v1
NeMo: Fast Count of Network Motifs Michel M. Koskas,Gilles G. Grasseau,Etienne E. Birmelé,Sophie S. Schbath,Stephane S. Robin Journées Ouvertes Biologie Informatique Mathématiques (JOBIM), Société Française de Bioinformatique, Jun 2011, Paris, France. pp.53-60 Communication dans un congrès hal-01000038v1
Modèles de graphe aléatoire à classes chevauchantes pour l'analyse des réseaux Pierre Latouche,Etienne E. Birmelé,Christophe Ambroise 42èmes Journées de Statistique, 2010, Marseille, France, France Communication dans un congrès inria-00494820v1
Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms Paulo Vieira Milreu,Vicente Acuña,Etienne E. Birmelé,Pierluigi Crescenzi,Alberto Marchetti-Spaccamelaet al. Workshop on Algorithms in Bioinformatics (WABI), Sep 2010, Liverpool, United Kingdom. pp.226-237, ⟨10.1007/978-3-642-15294-8_19⟩ Communication dans un congrès hal-00751339v1
A latent logistic model to uncover overlapping clusters in networks Pierre Latouche,Etienne E. Birmelé,Christophe Ambroise Atelier AGS (Apprentissage et Graphes pour les Systèmes complexes), May 2009, Hammamet, Tunisia. pp.3-8 Communication dans un congrès hal-00629310v1
Uncovering overlapping clusters in biological networks Pierre Latouche,Etienne E. Birmelé,Christophe Ambroise Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jun 2009, Nantes, France. pp.28 Communication dans un congrès hal-00629321v1

Chapitre d'ouvrage (3)

Overlapping clustering methods for networks Pierre Latouche,Etienne E. Birmelé,Christophe Ambroise Edoardo M. Airoldi, David Blei, Elena A. Erosheva, Stephen E. Fienberg. Chapman and Hall/CRC. Handbook of Mixed Membership Models and Their Applications, Chapman and Hall/CRC, in press, 2014 Chapitre d'ouvrage hal-00984395v1
Bayesian methods for graph clustering Pierre Latouche,Etienne E. Birmelé,Christophe Ambroise Andreas Fink, Berthold Lausen, Wilfried Seidel and Alfred Ultsch. Advances in Data Analysis, Data Handling and Business Intelligence, Springer, pp.229-239, 2009, Studies in Classification, Data Analysis, and Knowledge Organization, 978-3-642-01043-9. ⟨10.1007/978-3-642-01044-6⟩ Chapitre d'ouvrage hal-00629294v1
Brambles, prisms and grids Etienne Birmele,Adrian Bondy,Bruce Reed Graph Theory in Paris - Proceedings of a Conference in Memory of Claude Berge, Birkhauser, pp.37-44, 2007 Chapitre d'ouvrage hal-00730790v1

Pré-publication, Document de travail (7)

Group lasso based selection for high-dimensional mediation analysis Allan Jérolon,Flora Alarcon,Florence Pittion,Magali Richard,Olivier Françoiset al. 2025 Pré-publication, Document de travail hal-04710663v2
Detecting adverse high-order drug interactions from individual case safety reports using computational statistics on disproportionality measures Jules Bangard,Einar Holsbø,Kristian Svendsen,Vittorio Perduca,Etienne Birmelé 2025 Pré-publication, Document de travail hal-05012416v1
ENUMERATING SETS OF GENOMIC ALTERATIONS CHARACTERIZING A USER-DEFINED SUBGROUP Jennifer Wong,Thomas Pichetti,François Radvanyi,Etienne E. Birmelé 2021 Pré-publication, Document de travail hal-03174404v1
Causal mediation analysis in presence of multiple mediators uncausally related Allan Jerolon,Laura Baglietto,Etienne Birmele,Vittorio Perduca,Flora Alarcon 2018 Pré-publication, Document de travail hal-01879552v1
Decomposing a Graph into Shortest Paths with Bounded Eccentricity Etienne E. Birmelé,Fabien de Montgolfier,Léo Planche,Laurent Viennot 2017 Pré-publication, Document de travail hal-01511357v2
Minimum Eccentricity Shortest Path Problem: an Approximation Algorithm and Relation with the k-Laminarity Problem Etienne E. Birmelé,Fabien de Montgolfier,Léo Planche 2016 Pré-publication, Document de travail hal-01366782v1
Choose Outsiders First: a mean 2-approximation random algorithm for covering problems. Etienne Birmele 2012 Pré-publication, Document de travail hal-00726287v1

Rapport (1)

Arc-chromatic number of digraphs in which each vertex has bounded outdegree or bounded indegree Stéphane Bessy,Etienne E. Birmelé,Frédéric Havet [Research Report] RR-5364, INRIA. 2004, pp.20 Rapport (rapport de recherche) inria-00070639v1

HDR (1)

Etude structurelle des réseaux : modèles aléatoires, motifs et cycles. Etienne Birmele Bio-informatique [q-bio.QM]. Université d'Evry-Val d'Essonne, 2011 HDR tel-00750375v1