Elina THIBEAU-SUTRE Postdoc in the Mathematics of Imaging and AI group, University of Twente (The Netherlands).

Identifiants chercheurs

IdHAL :

elina-thibeau-sutre

ORCID :

0000-0002-4615-0237

IdRef :

263495256

Publications

Thèse (1)

Reproducible and interpretable deep learning for the diagnosis, prognosis and subtyping of Alzheimer’s disease from neuroimaging data Elina Thibeau-Sutre Medical Imaging. Sorbonne Université, 2021. English. ⟨NNT : 2021SORUS495⟩ Thèse tel-03500490v2

Article dans une revue (8)

Contrast-enhanced to non-contrast-enhanced image translation to exploit a clinical data warehouse of T1-weighted brain MRI Simona Bottani,Elina Thibeau-Sutre,Aurélien Maire,Sebastian Ströer,Didier Dormontet al. BMC Medical Imaging, 2024, 24 (1), pp.67. ⟨10.1186/s12880-024-01242-3⟩ Article dans une revue hal-03497645v2
Data Augmentation in High Dimensional Low Sample Size Setting Using a Geometry-Based Variational Autoencoder Clément Chadebec,Elina Thibeau-Sutre,Ninon Burgos,Stéphanie Allassonnière IEEE Transactions on Pattern Analysis and Machine Intelligence, 2022, ⟨10.1109/TPAMI.2022.3185773⟩ Article dans une revue hal-03214093v1
ClinicaDL: an open-source deep learning software for reproducible neuroimaging processing Elina Thibeau-Sutre,Mauricio Diaz,Ravi Hassanaly,Alexandre M Routier,Didier Dormontet al. Computer Methods and Programs in Biomedicine, 2022, 220, pp.106818. ⟨10.1016/j.cmpb.2022.106818⟩ Article dans une revue hal-03351976v2
Predicting the Progression of Mild Cognitive Impairment Using Machine Learning: A Systematic, Quantitative and Critical Review Manon Ansart,Stéphane Epelbaum,Giulia Bassignana,Alexandre Bône,Simona Bottaniet al. Medical Image Analysis, 2021, 67, pp.101848. ⟨10.1016/j.media.2020.101848⟩ Article dans une revue hal-02337815v2
Clinica: an open source software platform for reproducible clinical neuroscience studies Alexandre Routier,Ninon Burgos,Mauricio Diaz,Michael Bacci,Simona Bottaniet al. Frontiers in Neuroinformatics, 2021, 15, pp.689675. ⟨10.3389/fninf.2021.689675⟩ Article dans une revue hal-02308126v4
Deep learning for brain disorders: from data processing to disease treatment Ninon Burgos,Simona Bottani,Johann Faouzi,Elina Thibeau-Sutre,Olivier Colliot Briefings in Bioinformatics, 2021, 22 (2), pp.1560-1576. ⟨10.1093/bib/bbaa310⟩ Article dans une revue hal-03070554v1
Ensemble Learning of Convolutional Neural Network, Support Vector Machine, and Best Linear Unbiased Predictor for Brain Age Prediction: ARAMIS Contribution to the Predictive Analytics Competition 2019 Challenge Baptiste Couvy-Duchesne,Johann Faouzi,Benoît Martin,Elina Thibeau-Sutre,Adam Wildet al. Frontiers in Psychiatry, 2020, 11, ⟨10.3389/fpsyt.2020.593336⟩ Article dans une revue hal-03136463v1
Convolutional Neural Networks for Classification of Alzheimer's Disease: Overview and Reproducible Evaluation Junhao Wen,Elina Thibeau-Sutre,Mauricio Diaz-Melo,Jorge Samper-González,Alexandre Routieret al. Medical Image Analysis, 2020, 63, pp.101694. ⟨10.1016/j.media.2020.101694⟩ Article dans une revue hal-02562504v2

Communication dans un congrès (14)

Recent advances in the open-source ClinicaDL software for reproducible neuroimaging with deep learning Ravi Hassanaly,Camille Brianceau,Mauricio Diaz,Sophie Loizillon,Elina Thibeau-Sutreet al. SPIE Medical Imaging, Feb 2024, San Diego, United States. pp.519-524, ⟨10.1117/12.3006039⟩ Communication dans un congrès hal-04419141v1
Uncertainty-based quality assurance of carotid artery wall segmentation in black-blood MRI Elina Thibeau-Sutre,Dieuwertje Alblas,Sophie Buurman,Christoph Brune,Jelmer M Wolterink Uncertainty for Safe Utilization of Machine Learning in Medical Imaging (UNSURE), Oct 2023, Vancouver, Canada. pp.95-103, ⟨10.1007/978-3-031-44336-7_10⟩ Communication dans un congrès hal-04182993v1
How can data augmentation improve attribution maps for disease subtype explainability? Elina Thibeau-Sutre,Jelmer M Wolterink,Olivier Colliot,Ninon Burgos SPIE Medical Imaging, Feb 2023, San Diego, United States Communication dans un congrès hal-03966737v1
Advances in the Clinica software platform for clinical neuroimaging studies Omar El Rifai,Mauricio Diaz Melo,Ravi Hassanaly,Matthieu Joulot,Alexandre M Routieret al. OHBM 2022 - Annual meeting of the Organization for Human Brain Mapping, Jun 2022, Glasgow, United Kingdom Communication dans un congrès hal-03728243v1
ClinicaDL: an open-source deep learning software for reproducible neuroimaging processing Elina Thibeau-Sutre,Mauricio Diaz,Ravi Hassanaly,Olivier Colliot,Ninon Burgos OHBM 2022 - Annual meeting of the Organization for Human Brain Mapping, Jun 2022, Glasgow, United Kingdom Communication dans un congrès hal-04279014v1
MRI field strength predicts Alzheimer's disease: a case example of bias in the ADNI data set Elina Thibeau-Sutre,Baptiste Couvy-Duchesne,Didier Dormont,Olivier Colliot,Ninon Burgos ISBI 2022 - International Symposium on Biomedical Imaging, Mar 2022, Kolkata, India. ⟨10.1109/ISBI52829.2022.9761504⟩ Communication dans un congrès hal-03542213v1
Homogenization of brain MRI from a clinical data warehouse using contrast-enhanced to non-contrast-enhanced image translation with U-Net derived models Simona Bottani,Elina Thibeau-Sutre,Aurélien Maire,Sebastian Ströer,Didier Dormontet al. SPIE Medical Imaging 2022: Image Processing, Feb 2022, San Diego, United States. pp.576-582, ⟨10.1117/12.2608565⟩ Communication dans un congrès hal-03478798v1
Forecast Alzheimer's disease progression to better select patients for clinical trials Etienne Maheux,Juliette Ortholand,Colin Birkenbihl,Elina Thibeau-Sutre,Meemansa Soodet al. ISCB 2021: 42nd Conference of the International Society for Clinical Biostatistics, Jul 2021, Online, France Communication dans un congrès hal-03483237v1
Clinica: an open-source software platform for reproducible clinical neuroscience studies Omar El-Rifai,Mauricio Diaz Melo,Ravi Hassanaly,Matthieu Joulot,Alexandre M Routieret al. MRI Together 2021 - A global workshop on Open Science and Reproducible MR Research, Dec 2021, Online, France Communication dans un congrès hal-03513920v1
New longitudinal and deep learning pipelines in the Clinica software platform Alexandre Routier,Arnaud Marcoux,Mauricio Diaz Melo,Jorge Samper-González,Adam Wildet al. OHBM 2020 - Annual meeting of the Organization for Human Brain Mapping, Jun 2020, Montreal / Virtual, Canada Communication dans un congrès hal-02549242v1
Visualization approach to assess the robustness of neural networks for medical image classification Elina Thibeau-Sutre,Olivier Colliot,Didier Dormont,Ninon Burgos SPIE Medical Imaging 2020, Feb 2020, Houston, United States. ⟨10.1117/12.2548952⟩ Communication dans un congrès hal-02370532v3
How serious is data leakage in deep learning studies on Alzheimer’s disease classification? Junhao Wen,Elina Thibeau-Sutre,Jorge Samper-Gonzalez,Alexandre M Routier,Simona Bottaniet al. Organization for Human Brain Mapping (OHBM), Jun 2019, Roma, Italy Communication dans un congrès hal-03365742v1
How serious is data leakage in deep learning studies on Alzheimer's disease classification? Junhao Wen​,Elina Thibeau--Sutre​,Jorge Samper-González​,Alexandre M Routier,Simona Bottani​et al. 2019 OHBM Annual meeting - Organization for Human Brain Mapping, Jun 2019, Rome, Italy Communication dans un congrès hal-02105133v2
New advances in the Clinica software platform for clinical neuroimaging studies Alexandre Routier,Arnaud Marcoux,Mauricio Diaz Melo,Jérémy Guillon,Jorge Samper-Gonzálezet al. OHBM 2019 - Annual Meeting on Organization for Human Brain Mapping, Jun 2019, Roma, Italy. ⟨10.1016/j.neuroimage.2011.09.015⟩ Communication dans un congrès hal-02132147v2

Poster de conférence (3)

ClinicaDL: an open-source deep learning software for reproducible neuroimaging processing Elina Thibeau-Sutre,Mauricio Diaz,Ravi Hassanaly,Alexandre M Routier,Didier Dormontet al. 3IA Doctoral Workshop, Nov 2021, Toulouse, France Poster de conférence hal-03423072v2
Visualization approach to assess the robustness of neural networks for medical image classification Elina Thibeau-Sutre,Olivier Colliot,Didier Dormont,Ninon Burgos ICM days 2019, Jan 2020, Louan, France Poster de conférence hal-03365775v1
Identification of unlabeled latent subtypes with saliency maps Elina Thibeau-Sutre,Olivier Colliot,Didier Dormont,Ninon Burgos ICM welcome days, Oct 2020, Paris (online), France Poster de conférence hal-03365788v1

Chapitre d'ouvrage (1)

Interpretability of Machine Learning Methods Applied to Neuroimaging Elina Thibeau-Sutre,Sasha Collin,Ninon Burgos,Olivier Colliot Olivier Colliot. Machine Learning for Brain Disorders, Springer, 2023, ⟨10.1007/978-1-0716-3195-9_22⟩ Chapitre d'ouvrage hal-03615163v2