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Elise Prieur-Gaston

23
Documents
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Publications

thierry-lecroq

UMI-VarCal: a new UMI-based variant caller that efficiently improves low-frequency variant detection in paired-end sequencing NGS libraries

Vincent Sater , Pierre-Julien Viailly , Thierry Lecroq , Élise Prieur-Gaston , Elodie Bohers
Bioinformatics, 2020, 36 (9), pp.2718-2724. ⟨10.1093/bioinformatics/btaa053⟩
Journal articles hal-02468271v1

Fast practical online exact single and multiple pattern matching algorithms in highly similar sequences

Nadia Ben Nsira , Thierry Lecroq , Élise Prieur Gaston
International Journal of Data Mining and Bioinformatics, 2019, 22 (1), pp.1. ⟨10.1504/IJDMB.2019.099285⟩
Journal articles hal-02113316v1

A survey of string orderings and their application to the Burrows–Wheeler transform

Jacqueline Daykin , Richard Groult , Yannick Guesnet , Thierry Lecroq , Arnaud Lefebvre
Theoretical Computer Science, 2018, 710, pp.52 - 65. ⟨10.1016/j.tcs.2017.02.021⟩
Journal articles hal-01894859v1

Abelian powers and repetitions in Sturmian words

Gabriele Fici , Alessio Langiu , Thierry Lecroq , Arnaud Lefebvre , Filippo Mignosi
Theoretical Computer Science, 2016, 635, pp.16 - 34. ⟨10.1016/j.tcs.2016.04.039⟩
Journal articles hal-01894873v1

Fast computation of abelian runs

Gabriele Fici , Tomasz Kociumaka , Thierry Lecroq , Arnaud Lefebvre , Elise Prieur-Gaston
Theoretical Computer Science, 2016, 656, pp.256-264. ⟨10.1016/j.tcs.2015.12.010⟩
Journal articles hal-01956124v1

Binary block order Rouen transform

J. W. Daykin , Richard Groult , Guesnet Yannick , Thierry Lecroq , Arnaud Lefebvre
Theoretical Computer Science, 2016, ⟨10.1016/j.tcs.2016.05.028⟩
Journal articles hal-01323759v1

A note on easy and efficient computation of full abelian periods of a word

Gabriele Fici , Thierry Lecroq , Arnaud Lefebvre , Elise Prieur-Gaston , William F. Smyth
Discrete Applied Mathematics, 2016, 212, pp.88 - 95. ⟨10.1016/j.dam.2015.09.024⟩
Journal articles hal-01894875v1
Image document

EVA: Exome Variation Analyzer, an efficient and versatile tool for filtering strategies in medical genomics

Sophie Coutant , Chloé Cabot , Arnaud Lefebvre , Martine Léonard , Elise Prieur-Gaston
BMC Bioinformatics, 2012, 13 (Suppl 14), pp.S9
Journal articles inserm-00730215v1
Image document

Matching health information seekers' queries to medical terms

Lina F Soualmia , Elise Prieur-Gaston , Zied Moalla , Thierry Lecroq , Stéfan J Darmoni
BMC Bioinformatics, 2012, 13 Suppl 14, pp.S11. ⟨10.1186/1471-2105-13-S14-S11⟩
Journal articles hal-00845358v1

Identification de répétitions dans les navigations au sein d'un catalogue de santé

Alexandre Pauchet , Mohamad El-Abed , Tayeb Merabti , Élise Prieur , Thierry Lecroq
Revue des Sciences et Technologies de l'Information - Série RIA : Revue d'Intelligence Artificielle, 2009, 23 (1), pp.113-132
Journal articles hal-00450114v1

On-line construction of compact suffix vectors and maximal repeats

Elise Prieur , Thierry Lecroq
Theoretical Computer Science, 2008, 407 (1-3), pp.290-301
Journal articles hal-00469299v1

From Suffix Trees to Suffix Vectors

Elise Prieur , Thierry Lecroq
International Journal of Foundations of Computer Science, 2006, 17 (6), pp.1385-1402
Journal articles hal-00469409v1

Practical fast on-line exact pattern matching algorithms for highly similar sequences

Nadia Ben Nsira , Thierry Lecroq , Élise Prieur-Gaston
Proceedings of the IEEE BIBM 2018 Workshop on Data Mining from Genomic Variants and Its Application to Genome-wide Analysis, Dec 2018, Madrid, Spain. pp.1772--1777, ⟨10.1109/BIBM.2018.8621319⟩
Conference papers hal-01956537v1

Three Strategies for the Dead-Zone String Matching Algorithm

Jacqueline W. Daykin , Richard Groult , Yannick Guesnet , Thierry Lecroq , Arnaud Lefebvre
Proceedings of the Prague Stringology Conference 2018, Aug 2017, Prague, Czech Republic. pp.117--128
Conference papers hal-01956358v1

Online Computation of Abelian Runs

Gabriele Fici , Thierry Lecroq , Arnaud Lefebvre , Elise Prieur-Gaston
LATA, Feb 2015, Nice, France. pp.391-401
Conference papers hal-01955960v1

Computing Abelian Periods in Words

Gabriele Fici , Thierry Lecroq , Arnaud Lefebvre , Elise Prieur-Gaston
Prague Stringology Conference, 2011, Prague, Czech Republic. pp.184-196
Conference papers hal-00627216v1

Computing Abelian Periods in Words

Gabriele Fici , Thierry Lecroq , Arnaud Lefebvre , Elise Prieur-Gaston
SeqBi11 - Workshop Algorithmique, combinatoire du texte et applications en bio-informatique, 2011, Rennes, France
Conference papers hal-00560414v1

Computing abelian periods in words

Gabriele Fici , Thierry Lecroq , Arnaud Lefebvre , Elise Prieur-Gaston
London Stringology Days/London Algorithmic Workshop 2011, 2011, Londres, United Kingdom
Conference papers hal-00569139v1

On-line construction of compact suffix vectors and maximal repeats

Elise Prieur , Thierry Lecroq
Journées montoises, 2006, Rennes, France. pp.311-322
Conference papers hal-00469601v1