ELODIE DRULA

Publications

Article dans une revue (56)

Phenogenomics reveals the ecology and evolution of Trichoderma fungi for sustainable agriculture Andrei Steindorff,Feng Cai,Mingyue Ding,Siqi Jiang,Lea Atanasovaet al. Nature Microbiology, 2026, 11 (3), pp.815-831. ⟨10.1038/s41564-026-02260-3⟩ Article dans une revue hal-05546172v1
Three pairs of fungal Trametes strains isolated from distinct geographic origins show conserved genomic features and adaptive response to plant biomass Elodie Drula,David Navarro,Julien Lambert,Delphine Chaduli,Anne Lomascoloet al. Bioresource Technology, 2026, 446, pp.133990. ⟨10.1016/j.biortech.2026.133990⟩ Article dans une revue hal-05507610v1
Division of the large and multifunctional glycoside hydrolase family 2: high functional specificity and biochemical assays in the uncharacterized subfamilies Annie Lebreton,Marie-Line Garron,Marlene Vuillemin,Bo Pilgaard,Bastian Hornunget al. Biotechnology for Biofuels and Bioproducts, 2025, 18 (1), pp.68. ⟨10.1186/s13068-025-02669-8⟩ Article dans une revue hal-05285721v1
The FUNG-GROWTH database: linking fungal phenotype to genome Ronald de Vries,Ad Wiebenga,Guillermo Aguilar Osorio,Maria Victoria Aguilar Pontes,Evy Battagliaet al. Microbiology Resource Announcements, 2025, 14 (9), pp.e0037825. ⟨10.1128/mra.00378-25⟩ Article dans une revue hal-05285736v1
A Comparison of the Biotechnological Potential of Marine and Terrestrial Species of Two Orders of Sordariomycete Fungi Raquel Ledo Doval,Astrid Müller,Daren Brown,Derek Johnson,C Alisha Quandtet al. Marine Biotechnology, 2025, 27 (4), pp.103. ⟨10.1007/s10126-025-10484-3⟩ Article dans une revue hal-05285750v1
Bacterial polysaccharide lyase family 33: Specificity from an evolutionarily conserved binding tunnel Mélanie Loiodice,Elodie Drula,Zak Mciver,Svetlana Antonyuk,Arnaud Basléet al. Proceedings of the National Academy of Sciences of the United States of America, 2025, 122 (7), pp.e2421623122. ⟨10.1073/pnas.2421623122⟩ Article dans une revue hal-04968947v1
Whole genome sequence, CAZyme repertoire and sugar metabolic model of the phytopathogenic fungus Kretzschmaria zonata GFP 132 Mariana Regina Almas Do Carmo,Alessia Manassero,Rafaela Zandonade Ventorim,Mao Peng,Tulio Morganet al. Molecular Genetics and Genomics, 2025, 300 (1), pp.47. ⟨10.1007/s00438-025-02253-7⟩ Article dans une revue hal-05285755v1
Functional Carbohydrate-Active Enzymes Acquired by Horizontal Gene Transfer from Plants in the Whitefly &lt;i&gt;Bemisia tabaci&lt;/i&gt; Dominique Colinet,Mireille Haon,Elodie Drula,Mathilde Boyer,Sacha Griselet al. Genome Biology and Evolution, 2025, 17 (2), pp.evaf012. ⟨10.1093/gbe/evaf012⟩ Article dans une revue hal-04968956v1
Wood decay under anoxia by the brown-rot fungus Fomitopsis pinicola Robert Röllig,Annie Lebreton,Lucia Grenga,Rosalie Cresswell,Signe Lettet al. Nature Communications, 2025, 16 (1), pp.7352. ⟨10.1038/s41467-025-62567-3⟩ Article dans une revue hal-05242906v1
Comparative genomics of Aspergillus nidulans and section Nidulantes Sebastian Theobald,Tammi Vesth,Jane L Nybo,Jens C Frisvad,Inge Kjærbøllinget al. Current Research in Microbial Sciences, 2025, 8, pp.100342. ⟨10.1016/j.crmicr.2025.100342⟩ Article dans une revue hal-04968952v1
Pangeneric analyses reveal the divergent genome evolution and ecologies between morels and truffles in the Morchellaceae Gregory Bonito,Shingo Miyauchi,Richard Hayes,Hao Tan,Alan Kuoet al. Current Biology, 2025, 35 (17), pp.4135-4150.e6. ⟨10.1016/j.cub.2025.07.037⟩ Article dans une revue hal-05285742v1
Snow- and ice-ecosystem cleaning capability of the pucciniomycotinous yeast Phenoliferia psychrophenolica Jade Ezzedine,Pierre Guenzi-Tiberi,Gaëlle Villain,Riccardo Aiese Cigliano,Yacine Diagneet al. Communications Biology, 2025, 8 (1), pp.1084. ⟨10.1038/s42003-025-08506-w⟩ Article dans une revue hal-05285714v1
Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses Andrei S Steindorff,Maria Victoria Aguilar-Pontes,Aaron J Robinson,Bill Andreopoulos,Kurt Labuttiet al. Communications Biology, 2024, 7 (1), pp.1124. ⟨10.1038/s42003-024-06681-w⟩ Article dans une revue hal-04882241v1
Streptomyces castrisilvae sp. nov. and Streptomyces glycanivorans sp. nov., novel soil streptomycetes metabolizing mutan and alternan Tove Widén,Albert Tafur Rangel,Vincent Lombard,Elodie Drula,Scott Mazurkewichet al. International Journal of Systematic and Evolutionary Microbiology, 2024, 74 (9), pp.006514. ⟨10.1099/ijsem.0.006514⟩ Article dans une revue hal-04882192v1
Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi Riccardo Baroncelli,José Cobo-Díaz,Tiziano Benocci,Mao Peng,Evy Battagliaet al. GigaScience, 2024, 13, pp.giae036. ⟨10.1093/gigascience/giae036⟩ Article dans une revue hal-04915149v1
Extreme overall mushroom genome expansion in Mycena s.s. irrespective of plant hosts or substrate specializations Christoffer Bugge Harder,Shingo Miyauchi,Máté Virágh,Alan Kuo,Ella Thoenet al. Cell Genomics, 2024, 4 (7), pp.100586. ⟨10.1016/j.xgen.2024.100586⟩ Article dans une revue hal-04795684v1
Candidate genes involved in biosynthesis and degradation of the main extracellular matrix polysaccharides of brown algae and their probable evolutionary history Lisa Mazéas,Ahlem Bouguerba-Collin,J. Mark Cock,France Denoeud,Olivier Godfroyet al. BMC Genomics, 2024, 25 (1), pp.950. ⟨10.1186/s12864-024-10811-3⟩ Article dans une revue hal-04734202v1
A global phylogenomic analysis of the shiitake genus Lentinula Sean Sierra-Patev,Byoungnam Min,Miguel Naranjo-Ortiz,Brian Looney,Zachary Konkelet al. Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (10), pp.e2214076120. ⟨10.1073/pnas.2214076120⟩ Article dans une revue hal-04144610v1
Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi Yogesh K Gupta,Francismar C Marcelino-Guimarães,Cécile Lorrain,Andrew Farmer,Sajeet Haridaset al. Nature Communications, 2023, 14 (1), pp.1835. ⟨10.1038/s41467-023-37551-4⟩ Article dans une revue hal-04143167v1
Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria Neha Sahu,Boris Indic,Johanna Wong-Bajracharya,Zsolt Merényi,Huei-Mien Keet al. Nature Microbiology, 2023, 8 (9), pp.1668-1681. ⟨10.1038/s41564-023-01448-1⟩ Article dans une revue hal-04382375v1
Functional exploration of the glycoside hydrolase family GH113 Marie Couturier,Mélanie Touvrey-Loiodice,Nicolas Terrapon,Elodie Drula,Laurine Buonet al. PLoS ONE, 2022, 17 (4), pp.1-14. ⟨10.1371/journal.pone.0267509⟩ Article dans une revue hal-03656671v1
Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk‐cap ( Lactarius ) mushrooms Annie Lebreton,Nianwu Tang,Alan Kuo,Kurt Labutti,William Andreopouloset al. New Phytologist, 2022, 235 (1), pp.306-319. ⟨10.1111/nph.18143⟩ Article dans une revue hal-03946660v1
Phylogenomics and Comparative Genomics Highlight Specific Genetic Features in Ganoderma Species Yi-Fei Sun,Annie Lebreton,Jia-Hui Xing,Yu-Xuan Fang,Jing Siet al. Journal of Fungi, 2022, 8 (3), pp.311. ⟨10.3390/jof8030311⟩ Article dans une revue hal-03627194v1
Exploring the impact of Verticillium wilt disease on the mechanical properties of elementary flax (Linum usitatissimum L.) fibres Lucile Nuez,Sylvie Durand,Alessia Melelli,Jean-Guy Berrin,Mireille Haonet al. Industrial Crops and Products, 2022, 182, pp.114900. ⟨10.1016/j.indcrop.2022.114900⟩ Article dans une revue hal-03656635v1
Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales Gang Wu,Shingo Miyauchi,Emmanuelle Morin,Alan Kuo,Elodie Drulaet al. New Phytologist, 2022, 10 (4), ⟨10.1111/nph.17858⟩ Article dans une revue hal-03473169v1
Assembly and synthesis of the extracellular matrix in brown algae Lisa Mazéas,Rina Yonamine,Tristan Barbeyron,Bernard Henrissat,Elodie Drulaet al. Seminars in Cell and Developmental Biology, In press, 134, pp.112-124. ⟨10.1016/j.semcdb.2022.03.005⟩ Article dans une revue hal-03627114v1
The carbohydrate-active enzyme database: functions and literature Elodie Drula,Marie-Line Garron,Suzan Dogan,Vincent Lombard,Bernard Henrissatet al. Nucleic Acids Research, 2022, 50 (D1), pp.D571-D577. ⟨10.1093/nar/gkab1045⟩ Article dans une revue hal-03588994v1
Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi Brian Looney,Shingo Miyauchi,Emmanuelle Morin,Elodie Drula,Pierre Emmanuel Courtyet al. New Phytologist, 2022, 233 (5), pp.2294-2309. ⟨10.1111/nph.17892⟩ Article dans une revue hal-04033326v1
Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay Hayat Hage,Shingo Miyauchi,Máté Virágh,Elodie Drula,Byoungnam Minet al. Environmental Microbiology, 2021, ⟨10.1111/1462-2920.15423⟩ Article dans une revue hal-03226505v1
Niche differentiation and evolution of the wood decay machinery in the invasive fungus Serpula lacrymans Jaqueline Hess,Sudhagar Balasundaram,Renee Bakkemo,Elodie Drula,Bernard Henrissatet al. The International Society of Microbiologial Ecology Journal, 2021, 15 (2), pp.592-604. ⟨10.1038/s41396-020-00799-5⟩ Article dans une revue hal-03167198v1
Fungal treatment for the valorization of technical soda lignin Mariane Daou,Clementina Farfan Soto,Amel Majira,Laurent Cézard,Betty Cottynet al. Journal of Fungi, 2021, 7 (1), pp.39. ⟨10.3390/jof7010039⟩ Article dans une revue hal-03120945v1
Genetic determinants of endophytism in the Arabidopsis root mycobiome Fantin Mesny,Shingo Miyauchi,Thorsten Thiergart,Brigitte Pickel,Lea Atanasovaet al. Nature Communications, 2021, 12 (1), pp.7227. ⟨10.1038/s41467-021-27479-y⟩ Article dans une revue hal-03508738v1
Identification of Copper-Containing Oxidoreductases in the Secretomes of Three Colletotrichum Species with a Focus on Copper Radical Oxidases for the Biocatalytic Production of Fatty Aldehydes David Ribeaucourt,Safwan Saker,David Navarro,Bastien Bissaro,Elodie Drulaet al. Applied and Environmental Microbiology, 2021, 87 (24), pp.e01526-21. ⟨10.1128/AEM.01526-21⟩ Article dans une revue hal-03619439v1
Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates Jennifer Brown,Candice Swift,Stephen Mondo,Susanna Seppala,Asaf Salamovet al. Biotechnology for Biofuels, 2021, 14 (1), pp.234. ⟨10.1186/s13068-021-02083-w⟩ Article dans une revue hal-03508676v1
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes Mario Franco,Jennifer Wisecaver,a Elizabeth Arnold,Yu-Ming Ju,Jason Slotet al. New Phytologist, 2021, ⟨10.1111/nph.17873⟩ Article dans une revue hal-03508718v1
A Putative Lignin Copper Oxidase from Trichoderma reesei Mariane Daou,Alexandra Bisotto,Mireille Haon,Lydie Oliveira Correia,Betty Cottynet al. Journal of Fungi, 2021, 7 (8), pp.643. ⟨10.3390/jof7080643⟩ Article dans une revue hal-03328494v1
Genomic analysis enlightens agaricales Lifestyle Evolution and increasing peroxidase diversity Francisco Ruiz-Dueñas,José Barrasa,Marisol Sánchez-García,Susana Camarero,Shingo Miyauchiet al. Molecular Biology and Evolution, 2020, 38 (4), p. 1428-1446. ⟨10.1093/molbev/msaa301⟩ Article dans une revue hal-03099933v1
Characterization of the CAZy Repertoire from the Marine-Derived Fungus Stemphylium lucomagnoense in Relation to Saline Conditions Wissal Ben Ali,David Navarro,Abhishek Kumar,Elodie Drula,Annick Turbé-Doanet al. Marine drugs, 2020, 18 (9), pp.1-21. ⟨10.3390/md18090461⟩ Article dans une revue hal-02953538v1
Conserved white rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus Shingo Miyauchi,Hayat Hage,Elodie Drula,Laurence Lesage-Meessen,Jean-Guy Berrinet al. DNA Research, 2020, ⟨10.1093/dnares/dsaa011⟩ Article dans une revue hal-02868456v2
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits Shingo Miyauchi,Enikő Kiss,Alan Kuo,Elodie Drula,Annegret Kohleret al. Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-020-18795-w⟩ Article dans une revue hal-03082507v1
Comparative genomics of Rhizophagus irregularis, R. cerebriforme, R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina Emmanuelle Morin,Shingo Miyauchi,Hélène San Clemente,Eric C. H. Chen,Adrian Pelinet al. New Phytologist, 2019, 222 (3), pp.1584-1598. ⟨10.1111/nph.15687⟩ Article dans une revue hal-02181069v1
A metagenomics investigation of carbohydrate-active enzymes along the goat and camel intestinal tract Saad Al-Masaudi,Abdessamad El Kaoutari,Elodie Drula,Elrashdy Redwan,Vincent Lombardet al. International Microbiology, 2019, 22 (4), pp.429-435. ⟨10.1007/s10123-019-00068-2⟩ Article dans une revue hal-02612526v1
Comparative genomics reveals unique wood‐decay strategies and fruiting body development in the Schizophyllaceae Neha Sahu,Krisztina Krizsán,Balázs Bálint,Gabor G Kovacs,Brigitta Kisset al. New Phytologist, 2019, 224 (2), pp.902-915. ⟨10.1111/nph.16032⟩ Article dans une revue hal-02588296v1
Investigating Host Microbiota Relationships Through Functional Metagenomics Elisabeth Laville,Josette Perrier,Nada Bejar,Marc Maresca,Jeremy Esqueet al. Frontiers in Microbiology, 2019, 10, 12 p. ⟨10.3389/fmicb.2019.01286⟩ Article dans une revue hal-02315852v1
Bacteroidetes use thousands of enzyme combinations to break down glycans Pascal Lapébie,Vincent Lombard,Elodie Drula,Nicolas Terrapon,Bernard Henrissat Nature Communications, 2019, 10 (2043), pp.1. ⟨10.1038/s41467-019-10068-5⟩ Article dans une revue hal-02588181v1
Multi-omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring Hao Tan,Annegret Kohler,Renyun Miao,Tianhai Liu,Qiang Zhanget al. Environmental Microbiology, 2019, 21 (10), pp.3909-3926. ⟨10.1111/1462-2920.14741⟩ Article dans une revue hal-02311393v1
Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass Shingo Miyauchi,Anaïs Rancon,Elodie Drula,Hayat Hage,Delphine Chaduliet al. Biotechnology for Biofuels, 2018, 11, ⟨10.1186/s13068-018-1198-5⟩ Article dans une revue hal-01867992v1
PULDB: the expanded database of Polysaccharide Utilization Loci Nicolas Terrapon,Vincent Lombard,Elodie Drula,Pascal Lapébie,Saad Al-Masaudiet al. Nucleic Acids Research, 2018, 46 (D1), pp.D677-D683. ⟨10.1093/nar/gkx1022⟩ Article dans une revue hal-02094620v1
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection Rekha Seshadri,Sinead Leahy,Graeme Attwood,Koon Hoong Teh,Suzanne Lambieet al. Nature Biotechnology, 2018, 36 (4), pp.359-367. ⟨10.1038/nbt.4110⟩ Article dans une revue hal-02094598v1
Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri Tammi C. Vesth,Jane L. Nybo,Sebastian Theobald,Jens C. Frisvad,Thomas O. Larsenet al. Nature Genetics, 2018, 50 (12), pp.1688-1695. ⟨10.1038/s41588-018-0246-1⟩ Article dans une revue hal-02094492v1
Lavender- and lavandin-distilled straws: an untapped feedstock with great potential for the production of high-added value compounds and fungal enzymes Laurence Lesage-Meessen,Marine Bou,Christian Ginies,Didier Chevret,David Navarroet al. Biotechnology for Biofuels, 2018, 11 (1), pp.217. ⟨10.1186/s13068-018-1218-5⟩ Article dans une revue hal-02467725v1
A Metagenomics Investigation of Carbohydrate-Active Enzymes along the Gastrointestinal Tract of Saudi Sheep Saad Al-Masaudi,Abdessamad El Kaoutari,Elodie Drula,Hussein Al-Mehdar,Elrashdy M. Redwanet al. Frontiers in Microbiology, 2017, 8, ⟨10.3389/fmicb.2017.00666⟩ Article dans une revue hal-01595245v1
A bioinformatics analysis of 3400 lytic polysaccharide oxidases from family AA9 Nicolas Lenfant,Matthieu Hainaut,Nicolas Terrapon,Elodie Drula,Vincent Lombardet al. Carbohydrate Research, 2017, 448, pp.166-174. ⟨10.1016/j.carres.2017.04.012⟩ Article dans une revue hal-01595066v1
The genome of the white-rot fungus [i]Pycnoporus cinnabarinus[/i]: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown Anthony Levasseur,Anne Lomascolo,Olivier Chabrol,Francisco J Ruiz-Dueñas,Eva Boukhris-Uzanet al. BMC Genomics, 2014, 15 (1), pp.486. ⟨10.1186/1471-2164-15-486⟩ Article dans une revue hal-01204353v1
The carbohydrate-active enzymes database (CAZy) in 2013 Bernard Henrissat,Vincent Lombard,Elodie Drula,Pedro Coutinho,Hemalatha Golaconda Ramulu Nucleic Acids Research, 2014, 42 (D1), pp.D490-D495. ⟨10.1093/nar/gkt1178⟩ Article dans une revue inserm-04405153v1
Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes Anthony Levasseur,Elodie Drula,Vincent Lombard,Pedro M Coutinho,Bernard Henrissat Biotechnology for Biofuels, 2013, 6 (41), pp.1-14. ⟨10.1186/1754-6834-6-41⟩ Article dans une revue hal-01268121v1

Communication dans un congrès (1)

Exploration of fungal biodiversity for the deconstruction of lignocellulosic biomass and the implementation of new biosynthetic pathways for green chemistry Emmanuel Bertrand,Jean-Guy Berrin,Christophe Boyer,Mariane Daou,Michel Delattreet al. European Union and Sustainable Development: Challenges and Prospects, Oct 2016, Clermont-Ferrand, France Communication dans un congrès hal-01652056v1

Poster de conférence (2)

Comparative genomics of Rhizophagus irregularis , R. cerebriforme , R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina Emmanuelle Morin,Hélène San Clemente,Shingo Miyauchi,Eric C H Chen,Alan Kuoet al. JOBIM, Jul 2019, Nantes, France Poster de conférence hal-03324335v1
Functional exploration of naturally and artificially enriched rumen microbiomes reveals novel enzymatic synergies involved in plant cell wall breakdown Lisa Ufarté,Elisabeth Laville,Davide Cecchini,Davide Rizzo,Etienne Amblardet al. Functional Metagenomics, Sep 2016, Inderøy, Norway Poster de conférence hal-02929438v1

Chapitre d'ouvrage (1)

The CAZy Database/the Carbohydrate-Active Enzyme (CAZy) Database: Principles and Usage Guidelines Nicolas Terrapon,Vincent Lombard,Elodie Drula,Pedro Coutinho,Bernard Henrissat A Practical Guide to Using Glycomics Databases, Springer Japan, pp.117-131, 2017, ⟨10.1007/978-4-431-56454-6_6⟩ Chapitre d'ouvrage hal-03508817v1

Pré-publication, Document de travail (2)

Global mapping of thioredoxin interacting proteins in&lt;i&gt;Neurospora crassa&lt;/i&gt; Lucia Bidondo,Elodie Drula,Jean-Charles Gaillard,Jean Armengaud,Jean-Guy Berrinet al. 2026 Pré-publication, Document de travail hal-05052561v1
Methionine oxidation of Carbohydrate-Active enZymes during white-rot wood decay Lise Molinelli,Elodie Drula,Jean-Charles Gaillard,David Navarro,Jean Armengaudet al. 2023 Pré-publication, Document de travail hal-04266319v1