Elodie Puybareau

Identifiants chercheurs

IdHAL :

elodie-puybareau

ORCID :

0000-0002-2748-6624

IdRef :

224942298

Publications

Article dans une revue (4)

MyoPS: A benchmark of myocardial pathology segmentation combining three-sequence cardiac magnetic resonance images Lei Li,Fuping Wu,Sihan Wang,Xinzhe Luo,Carlos Martín-Islaet al. Medical Image Analysis, 2023, 87, pp.102808. ⟨10.1016/j.media.2023.102808⟩ Article dans une revue hal-04429573v1
High throughput automated detection of axial malformations in Medaka fish embryo Diane Genest,Élodie Puybareau,Marc Léonard,Jean Cousty,Noémie de Crozéet al. Computers in Biology and Medicine, 2019, 105, pp.157-168. ⟨10.1016/j.compbiomed.2018.12.016⟩ Article dans une revue hal-01959606v2
The challenge of cerebral magnetic resonance imaging in neonates: A new method using mathematical morphology for the segmentation of structures including diffuse excessive high signal intensities Yongchao Xu,Baptiste Morel,Sonia Dahdouh,Élodie Puybareau,Alessio Virzìet al. Medical Image Analysis, 2018, 48, pp.75-94. ⟨10.1016/j.media.2018.05.003⟩ Article dans une revue hal-02104030v1
An automated assay for the assessment of cardiac arrest in fish embryo Élodie Puybareau,Diane Genest,Emilie Barbeau,Marc Léonard,Hugues Talbot Computers in Biology and Medicine, 2017, 81, pp.32-44. ⟨10.1016/j.compbiomed.2016.12.007⟩ Article dans une revue hal-01421156v2

Communication dans un congrès (21)

SPOOKY VASCULAR SKELETONS: A STUDY OF SKELETONIZATION ALGORITHMS AND THEIR EVALUATION ON 2D VASCULAR DATASETS Jules-Victor Lepinay,Oscar Morand,Elodie Puybareau ISBI 2026, Apr 2026, Londres, United Kingdom Communication dans un congrès hal-05554044v1
Improving Morphological Networks for Learning Image-to-Image Transforms Antoine Bottenmuller,Guillaume Tochon,Romain Hermary,Élodie Puybareau,Jesus Angulo 4th International Conference on Discrete Geometry and Mathematical Morphology (DGMM 2025), Nov 2025, Groningen, Netherlands Communication dans un congrès hal-05295593v1
Linear Object Detection in Document Images Using Multiple Object Tracking Philippe Bernet,Joseph Chazalon,Edwin Carlinet,Alexandre Bourquelot,Elodie Puybareau International Conference on Document Analysis and Recognition, Aug 2023, San josé, California, United States. pp.454-471, ⟨10.1007/978-3-031-41734-4_28⟩ Communication dans un congrès hal-04390556v1
FOANet: A Focus of Attention Network with Application to Myocardium Segmentation Zhou Zhao,Nicolas Boutry,Élodie Puybareau,Thierry Géraud Proceedings of the 25th International Conference on Pattern Recognition (ICPR), Jan 2021, Milan, Italy. pp.1120--1127, ⟨10.1109/ICPR48806.2021.9412016⟩ Communication dans un congrès hal-04579622v1
Going beyond p-Convolutions to Learn Grayscale Morphological Operators Alexandre Kirszenberg,Guillaume Tochon,Élodie Puybareau,Jesus Angulo Proceedings of the IAPR International Conference on Discrete Geometry and Mathematical Morphology (DGMM), May 2021, Uppsala, Sweden. pp.470--482, ⟨10.1007/978-3-030-76657-3_34⟩ Communication dans un congrès hal-04579608v1
Do not Treat Boundaries and Regions Differently: An Example on Heart Left Atrial Segmentation Zhou Zhao,Nicolas Boutry,Élodie Puybareau,Thierry Géraud Proceedings of the 25th International Conference on Pattern Recognition (ICPR), Jan 2021, Milan, Italy. pp.7447--7453, ⟨10.1109/ICPR48806.2021.9412755⟩ Communication dans un congrès hal-04579623v1
Stacked and parallel U-nets with multi-output for myocardial pathology segmentation Zhou Zhao,Nicolas Boutry,Élodie Puybareau Myocardial Pathology Segmentation Combining Multi-Sequence CMR Challenge, Dec 2020, Lima, Peru. pp.138--145, ⟨10.1007/978-3-030-65651-5_13⟩ Communication dans un congrès hal-04579618v1
Using Separated Inputs for Multimodal Brain Tumor Segmentation with 3D U-Net-like Architectures N. Boutry,J. Chazalon,E. Puybareau,G. Tochon,Hugues Talbotet al. Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries: 5th International Workshop,, Oct 2019, Shenzhen, China. pp.187-199, ⟨10.1007/978-3-030-46640-4_18⟩ Communication dans un congrès hal-04580407v1
A Two-Stage Temporal-Like Fully Convolutional Network Framework for Left Ventricle Segmentation and Quantification on MR Images Zhou Zhao,Nicolas Boutry,Élodie Puybareau,Thierry Géraud Statistical Atlases and Computational Models of the Heart. Multi-Sequence CMR Segmentation, CRT-EPiggy and LV Full Quantification Challenges−-10th International Workshop, STACOM 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 13, 2019, Revised Selected Papers, Oct 2019, Shenzhen, China. pp.405--413, ⟨10.1007/978-3-030-39074-7_42⟩ Communication dans un congrès hal-04579620v1
Two Stages CNN-Based Segmentation of Gliomas, Uncertainty Quantification and Prediction of Overall Patient Survival Thibault Buatois,Élodie Puybareau,Guillaume Tochon,J. Chazalon International MICCAI Brainlesion Workshop, Oct 2019, Shenzhen, China. pp.167--178, ⟨10.1007/978-3-030-46643-5_16⟩ Communication dans un congrès hal-04579596v1
Spherical Fluorescent Particle Segmentation and Tracking in 3D Confocal Microscopy Élodie Puybareau,Edwin Carlinet,Alessandro Benfenati,Hugues Talbot ISMM 2019 - 14th International Symposium on Mathematical Morphology, Bernhard Burgeth; Andreas Kleefeld; Benoît Naegel; Nicolas Passat; Benjamin Perret, Jul 2019, Saarbrücken, Germany. pp.520-531, ⟨10.1007/978-3-030-20867-7_40⟩ Communication dans un congrès hal-02426948v1
Real-Time Document Detection in Smartphone Videos Élodie Puybareau,Thierry Géraud Proceedings of the 24th IEEE International Conference on Image Processing (ICIP), Oct 2018, Athens, Greece. pp.1498--1502, ⟨10.1109/ICIP.2018.8451533⟩ Communication dans un congrès hal-04579615v1
A first step toward a fair comparison of evaluation protocols for text detection algorithms Aliona Dangla,Élodie Puybareau,Guillaume Tochon,Jonathan Fabrizio Proceedings of the IAPR International Workshop on Document Analysis Systems (DAS), Apr 2018, Vienna, Austria. ⟨10.1109/DAS.2018.55⟩ Communication dans un congrès hal-04579603v1
Segmentation of Gliomas and Prediction of Patient Overall Survival: A Simple and Fast Procedure Élodie Puybareau,Élodie Puybareau,J. Chazalon,Jonathan Fabrizio Proceedings of the Workshop on Brain Lesions (BrainLes), in conjunction with MICCAI, Sep 2018, Grenada, Spain. pp.199--209, ⟨10.1007/978-3-030-11726-9_18⟩ Communication dans un congrès hal-04579613v1
Periodic Area-of-Motion characterization for Bio-Medical applications Élodie Puybareau,Hugues Talbot,Laurent Najman ISBI 2017, Apr 2017, Melbourne, Australia. ⟨10.1109/ISBI.2017.7950503⟩ Communication dans un congrès hal-01467878v1
Towards the in-vivo automated assessment of nasal cilia mobility Élodie Puybareau,Emilie Bequignon,Mathieu Bottier,Gabriel Pelle,Bruno Louiset al. Congress of the European Rhinologic Society, Jul 2016, Stockholm, Sweden Communication dans un congrès hal-01333003v1
Automating the measurement of physiological parameters: a case study in the image analysis of cilia motion Élodie Puybareau,Hugues Talbot,E Bequignon,B Louis,G Pelleet al. IEEE International Conference on Image Processing (ICIP), Sep 2016, Phoenix, United States. ⟨10.1109/ICIP.2016.7532556⟩ Communication dans un congrès hal-01332942v1
Automatic detection of beating cilia with frequencies estimations Élodie Puybareau,Hugues Talbot,Gabriel Pelle,Bruno Louis,Laurent Najmanet al. Cilia 2014, Nov 2014, Paris, France. ⟨10.1186/2046-2530-4-S1-P85⟩ Communication dans un congrès hal-01332964v1
A regionalized automated measurement of ciliary beating frequency Élodie Puybareau,Hugues Talbot,G Pelle,B Louis,J.-F Paponet al. ISBI 2015, Apr 2015, New-York, United States. ⟨10.1109/ISBI.2015.7163927⟩ Communication dans un congrès hal-01154672v1
Automated heart rate estimation in fish embryo Élodie Puybareau,Hugues Talbot,Marc Léonard International Conference on Image Processing Theory, Tools and Applications (IPTA), Nov 2015, Orléans, France. ⟨10.1109/IPTA.2015.7367171⟩ Communication dans un congrès hal-01332927v1
An Automated Assay for the Evaluation of Mortality in Fish Embryo Élodie Puybareau,Marc Léonard,Hugues Talbot ISMM 2015, May 2015, Reykjavik, Iceland. ⟨10.1007/978-3-319-18720-4_10⟩ Communication dans un congrès hal-01154543v1

Chapitre d'ouvrage (2)

Morphologie Mathématique et traitement d'images Samy Blusseau,Élodie Puybareau Laurent Fuchs (éd.). Informatique Mathématique Une photographie en 2023, CNRS, Chapitre 3, pp. 87 --131, 2023, CNRS Alpha Chapitre d'ouvrage hal-04148876v1
Left Atrial Segmentation in a Few Seconds Using Fully Convolutional Network and Transfer Learning Élodie Puybareau,Zhao Zhou,Younes Khoudli,Edwin Carlinet,Yongchao Xuet al. Statistical Atlases and Computational Models of the Heart. Atrial Segmentation and LV Quantification Challenges --- 9th International Workshop, STACOM 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16, 2018, Revised Selected Papers, pp.339-347, 2019, ⟨10.1007/978-3-030-12029-0_37⟩ Chapitre d'ouvrage hal-02176449v1

Rapport (1)

Code de Conduite du GDR-IFM Miriam Backens,Magali Bardet,Jérémie Bettinelli,Marie van den Bogaard,Sylvie Boldoet al. GDR-IFM. 2026 Rapport (rapport d’expertise collective) hal-05539615v1

Thèse (1)

Motion analysis for Medical and Bio-medical applications Élodie Puybareau Bioinformatics [q-bio.QM]. Université Paris-Est, 2016. English. ⟨NNT : 2016PESC1063⟩ Thèse tel-01735046v1