Emmanuel Caruyer Chargé de recherche

Publications

Communication dans un congrès (36)

Optimization of Acquisition Schemes Towards a Better Estimation of Microstructure Parameters in Multidimensional Diffusion MRI Constance Bocquillon,Isabelle Corouge,Emmanuel Caruyer IPMI 2025 - Information Processing in Medical Imaging, May 2025, Kos Island, Greece. pp.142-153, ⟨10.1007/978-3-031-96628-6_10⟩ Communication dans un congrès hal-05369014v1
Improved Riemannian FOD averaging for fiber bundle priors incorporation in FOD-based tractography algorithms Grégoire Ville,Emmanuel Caruyer,Julie Coloigner IST 2025 - International Society for Tractography, Oct 2025, Bordeaux, France. pp.1-1 Communication dans un congrès hal-05425887v1
Optimisation de schémas d'acquisition pour une meilleure estimation des paramètres de microstructure en IRM de diffusion Constance Bocquillon,Isabelle Corouge,Emmanuel Caruyer SFRMBM 2025 - 7ème Congrès de la Société Française de Résonance Magnétique en Biologie et Médecine, Mar 2025, Saint-Malo, France. pp.1 Communication dans un congrès hal-05368961v1
Orientation dispersion estimated from multidimensional diffusion MRI: does it match simulated realistic microstructure? Constance Bocquillon,Juan Luis Villarreal Haro,Jonathan Rafael Patino Lopez,Jean-Philippe Thiran,Isabelle Corougeet al. ESMRMB 2024 - 40th Annual Meeting cientific European Society for Magnetic Resonance in Medecine and Biology, Oct 2024, Barcelone, Spain. pp.1-5 Communication dans un congrès hal-04795839v1
Atlases and generic priors for multi-compartment mapping with diffusion MRI Marie Poirier,Aymeric Stamm,Emmanuel Caruyer ESMRMB 2024 - 40th Annual Meeting cientific European Society for Magnetic Resonance in Medecine and Biology, ESMRMB, Oct 2024, Barcelona, Spain Communication dans un congrès hal-04843311v1
A piecewise-polynomial basis for generalized diffusion encoding gradient waveforms Emmanuel Caruyer ISMRM & ISMRT Annual Meeting & Exhibition, The International Society for Magnetic Resonance in Medicine (ISMRM), Jun 2023, Toronto ( CA ), Canada Communication dans un congrès inserm-04313189v1
Reproducibility and evolution of diffusion MRI measurements within the cervical spinal cord in multiple sclerosis Haykel Snoussi,Benoit Combès,Olivier Commowick,Elise Bannier,Anne Kerbratet al. ISBI 2022 - IEEE International Symposium on Biomedical Imaging, Mar 2022, Kolkata, India. pp.1-5 Communication dans un congrès inserm-03639907v1
Chaînes de traitement de données d'une tâche motrice en NIRS et comparaison avec l'IRM sur des sujets sains Nolwenn Jégou,Elise Bannier,Emmanuel Caruyer,Isabelle Corouge Workshop "Acquisition multimodale et analyse des données", Dec 2022, Rennes, France. pp.28 Communication dans un congrès hal-04308694v1
SANDI-AMICO: an open-source toolbox for fast Soma And Neurite Density Imaging (SANDI) with AMICO Simona Schiavi,Mario Ocampo-Pineda,Raphaël Truffet,Emmanuel Caruyer,Alessandro Daducciet al. 27th annual meeting of the Organization for Human Brain Mapping (OHBM), Jun 2021, Virtual, Singapore Communication dans un congrès inserm-03783770v1
The Microstructural Features of the Diffusion-Simulated Connectivity (DiSCo) Dataset Jonathan Rafael-Patino,Gabriel Girard,Raphaël Truffet,Marco Pizzolato,Jean-Philippe Thiranet al. CDMRI 2021 - International Workshop on Computational Diffusion MRI, Oct 2021, Strasbourg, France. pp.159-170, ⟨10.1007/978-3-030-87615-9_14⟩ Communication dans un congrès inserm-03366318v1
An evolutionary framework for microstructure-sensitive generalized diffusion gradient waveforms Raphaël Truffet,Jonathan Rafael-Patino,Gabriel Girard,Marco Pizzolato,Christian Barillotet al. MICCAI 2020 - 23rd International Conference on Medical Image Computing and Computer Assisted Intervention, Oct 2020, Lima, Peru. pp.1-11 Communication dans un congrès inserm-02910086v1
Optimal selection of diffusion-weighting gradient waveforms using compressed sensing and dictionary learning Raphaël Truffet,Christian Barillot,Emmanuel Caruyer ISMRM 2019 - 27th Annual Meeting & Exhibition, May 2019, Montréal, Canada. pp.1-3 Communication dans un congrès inserm-02015394v2
Multi-Dimensional Diffusion MRI Sampling Scheme: B-tensor Design and Accurate Signal Reconstruction Alice Bates,Alessandro Daducci,Emmanuel Caruyer ISMRM 2019 - 27th Annual Meeting & Exhibition, May 2019, Montréal, Canada. pp.1-4 Communication dans un congrès inserm-02065830v1
Geometric evaluation of distortion correction methods in diffusion MRI of the spinal cord Haykel Snoussi,Emmanuel Caruyer,Julien Cohen-Adad,Olivier Commowick,Benoit Combeset al. ISBI 2019 - 16th IEEE International Symposium on Biomedical Imaging, Apr 2019, Venice, Italy. pp.1696-1699, ⟨10.1109/ISBI.2019.8759196⟩ Communication dans un congrès inserm-01986723v1
Characterizing Peritumoral Tissue Using Free Water Elimination in Clinical DTI Abdol Aziz Ould Ismail,Drew Parker,Moises Hernandez-Fernandez,Steven Brem,Simon Alexanderet al. MICCAI 2018 - 21st International Conference on Medical Image Computing and Computer Assisted Intervention ; Workshop : Brain Lesion, Sep 2018, Granada, Spain. pp.1-9 Communication dans un congrès inserm-01867347v1
L2 Similarity Metrics for Diffusion Multi-Compartment Model Images Registration Olivier Commowick,Renaud Hédouin,Emmanuel Caruyer,Christian Barillot 20th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI, Sep 2017, Québec, Canada. pp.257-265, ⟨10.1007/978-3-319-66182-7_30⟩ Communication dans un congrès inserm-01556476v1
Comparison of inhomogeneity distortion correction methods in diffusion MRI of the spinal cord Haykel Snoussi,Emmanuel Caruyer,Olivier Commowick,Elise Bannier,Anne Kerbratet al. ESMRMB - 34th Annual Scientific Meeting European Society for Magnetic Resonance in Medecine and Biology, Oct 2017, Barcelone, Spain Communication dans un congrès inserm-01579134v2
Rotation-invariant measures for population study in HARDI Emmanuel Caruyer,Ragini Verma ISMRM, May 2014, Milan, Italy Communication dans un congrès hal-00944646v1
Phantomas: a flexible software library to simulate diffusion MR phantoms Emmanuel Caruyer,Alessandro Daducci,Maxime Descoteaux,Jean-Christophe Houde,Jean-Philippe Thiranet al. ISMRM, May 2014, Milan, Italy Communication dans un congrès hal-00944644v1
Addressing the Challenge of Edema in Fiber Tracking Jérémy Lecoeur,Emmanuel Caruyer,Mark Elliott,Steven Brem,Luke Macyszynet al. MICCAI 2014 DTI Tractography Challenge, Sep 2014, Boston, United States Communication dans un congrès hal-01072222v1
A comparative study of 16 tractography algorithms for the corticospinal tract: reproducibility and subject-specificity Emmanuel Caruyer,Luke Bloy,Birkan Tunç,Jérémy Lecoeur,Varsha Shankaret al. ISMRM, May 2014, Milan, Italy Communication dans un congrès hal-00944649v1
How should tractography go forward? A Tractometer evaluation of local reconstruction and tracking Jean-Christophe Houde,Emmanuel Caruyer,Alessandro Daducci,Maxime Descoteaux ISMRM, May 2014, Milan, Italy. pp.6470 Communication dans un congrès hal-01033816v1
Improving White Matter Tractography by Resolving the Challenges of Edema Jérémy Lecoeur,Emmanuel Caruyer,Luke Macyszyn,Ragini Verma MICCAI 2013 DTI Tractography Challenge, Sep 2013, Nagoya, Japan Communication dans un congrès hal-00850496v1
Optimal Regularization for MR Diffusion Signal Reconstruction Emmanuel Caruyer,Rachid Deriche ISBI - 9th IEEE International Symposium on Biomedical Imaging, May 2012, Barcelona, Spain Communication dans un congrès hal-00660635v1
Parametric Dictionary Learning in Diffusion MRI Sylvain Merlet,Emmanuel Caruyer,Aurobrata Ghosh,Rachid Deriche HARDI reconstruction workshop - ISBI - International Symposium on Biomedical Imaging, Alessandro Daducci and Jean-Philippe Thiran and Yves Wiaux, May 2012, Barcelona, Spain Communication dans un congrès hal-00697102v1
Parametric dictionary learning for modeling EAP and ODF in diffusion MRI Sylvain Merlet,Emmanuel Caruyer,Rachid Deriche Medical Image Computing and Computer Assisted Intervention (MICCAI), Oct 2012, Nice, France. 8 p Communication dans un congrès hal-00728067v1
A Computational Framework for Experimental Design in Diffusion MRI Emmanuel Caruyer,Rachid Deriche CDMRI - MICCAI Workshop on Computational Diffusion MRI, Oct 2012, Nice, France Communication dans un congrès hal-00747700v1
Incremental gradient table for multiple Q-shells diffusion MRI Emmanuel Caruyer,Christophe Lenglet,Guillermo Sapiro,Rachid Deriche HBM 17th Annual Meeting, Jun 2011, Québec, Canada Communication dans un congrès inria-00617957v1
Online Motion Detection in High Angular Resolution Diffusion Imaging Emmanuel Caruyer,Iman Aganj,Christophe Lenglet,Guillermo Sapiro,Rachid Deriche International Symposium on Biomedical Imaging: From Nano to Macro, Mar 2011, Chicago, United States Communication dans un congrès inria-00559904v2
Compressive Sensing Ensemble Average Propagator Estimation via L1 Spherical Polar Fourier Imaging Jian Cheng,Sylvain Merlet,Emmanuel Caruyer,Aurobrata Ghosh,Tianzi Jianget al. MICCAI Workshop on Computational Diffusion MRI - CDMRI'11, Sep 2011, Toronto, Canada Communication dans un congrès inria-00615434v1
Compressive Sensing Ensemble Average Propagator Estimation via L1 Spherical Polar Fourier Imaging Jian Cheng,Sylvain Merlet,Aurobrata Ghosh,Emmanuel Caruyer,Tianzi Jianget al. ISMRM, May 2011, Montréal, Canada Communication dans un congrès inria-00615437v1
Optimal Design of Multiple Q-shells experiments for Diffusion MRI Emmanuel Caruyer,Jian Cheng,Christophe Lenglet,Guillermo Sapiro,Tianzi Jianget al. MICCAI Workshop on Computational Diffusion MRI - CDMRI'11, Sep 2011, Toronto, Canada Communication dans un congrès inria-00617663v1
On Line Reconstruction and Motion Detection in HARDI Emmanuel Caruyer,Iman Aganj,Christophe Lenglet,Guillermo Sapiro,Rachid Deriche 19th ISMRM annual meeting, May 2011, Montréal, Canada Communication dans un congrès inria-00560899v1
Impact of radial and angular sampling on multiple shells acquisition in diffusion MRI Sylvain Merlet,Emmanuel Caruyer,Rachid Deriche MICCAI 2011, Sep 2011, Toronto, Canada. pp.113-121 Communication dans un congrès hal-00614387v1
Online orientation distribution function reconstruction in constant solid angle and its application to motion detection in HARDI Emmanuel Caruyer,Iman Aganj,Ryan Muetzel,Christophe Lenglet,Guillermo Sapiroet al. International Symposium on Biomedical Imaging: From Nano to Macro, Apr 2010, Rotterdam, Netherlands Communication dans un congrès inria-00559884v1
Adaptive Design of Sampling Directions in Diffusion Tensor MRI and Validation on Human Brain Images Emmanuel Caruyer,Rachid Deriche MICCAI Workshop on Diffusion Modelling and the Fiber Cup, Sep 2009, Londres, United Kingdom Communication dans un congrès inria-00560054v1

Poster de conférence (5)

Optimization of acquisition schemes towards a better estimation of microstructure parameters in diffusion MRI Constance Bocquillon,Isabelle Corouge,Emmanuel Caruyer ISMRM 2025 - Workshop on 40 years of diffusion: Past, Present & Future Perspectives, Feb 2025, Kyoto (Japan), Japan. 2025 Poster de conférence hal-05368999v1
Reproductibilité d'une tâche motrice en NIRS et comparaison à l'IRMf BOLD sur des sujets adultes sains Nolwenn Jégou,Elise Bannier,Nora Erhart,Hector H Garcia,Emmanuel Caruyeret al. SFRMBM 2023 - 6ème Congrès Scientifique de la Société Française de Résonance Magnétique en Biologie et Médecine, Mar 2023, Paris, France. pp.1-1 Poster de conférence hal-04032802v1
Étude de l’effet du bruit sur l'estimation de l'anisotropie microscopique en IRM de diffusion Constance Bocquillon,Marc Lapert,Elise Bannier,Isabelle Corouge,Emmanuel Caruyer SFRMBM 2023 - Sixième congrès de la Société Française de Résonance Magnétique en Biologie et Médecine, Mar 2023, Paris, France Poster de conférence hal-04072656v1
Reproducibility of motor task-based fNIRS and comparison with functional MRI in healthy adults Nolwenn Jégou,Elise Bannier,Nora Erhart,Hector H Garcia,Emmanuel Caruyeret al. Biennial meeting of the Society for functional Near-Infrared Spectroscopy (fNIRS 2022), Oct 2022, Boston, MA, United States. Poster de conférence hal-03783898v1
Optimal selection of diffusion-weighting gradient waveforms using compressed sensing and dictionary learning Raphaël Truffet,Emmanuel Caruyer AI days 2018, Apr 2018, Rennes, France. pp.1 Poster de conférence inserm-01939066v2

Article dans une revue (19)

A Riemannian framework for incorporating white matter bundle priors in ODF-based tractography algorithms. Thomas Durantel,Gabriel Girard,Emmanuel Caruyer,Olivier Commowick,Julie Coloigner PLoS ONE, In press, pp.1-10 Article dans une revue hal-04246380v1
Alpha Mesh Swc: automatic and robust surface mesh generation from the skeleton description of brain cells Alex Mcsweeney-Davis,Chengran Fang,Emmanuel Caruyer,Anne Kerbrat,Jing-Rebecca Li Briefings in Bioinformatics, 2025, 26 (3), ⟨10.1093/bib/bbaf258⟩ Article dans une revue hal-04913819v1
fNIRS reproducibility varies with data quality, analysis pipelines, and researcher experience Meryem Yücel,Robert Luke,Rickson Mesquita,Alexander von Lühmann,David Mehleret al. Communications Biology, 2025, 8 (1), pp.1149. ⟨10.1038/s42003-025-08412-1⟩ Article dans une revue hal-05441750v1
Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge Gabriel Girard,Jonathan Rafael-Patiño,Raphaël Truffet,Dogu Baran Aydogan,Nagesh Adluruet al. NeuroImage, 2023, 277, pp.1-11. ⟨10.1016/j.neuroimage.2023.120231⟩ Article dans une revue hal-04390592v1
Effectiveness of regional diffusion MRI measures in distinguishing multiple sclerosis abnormalities within the cervical spinal cord Haykel Snoussi,Julien Cohen-Adad,Benoît Combès,Élise Bannier,Slimane Tounektiet al. Brain and Behavior, 2023, 13 (11), pp.e3159. ⟨10.1002/brb3.3159⟩ Article dans une revue inserm-04313206v1
Consensus-based guidance for conducting and reporting multi-analyst studies Balazs Aczel,Barnabas Szaszi,Gustav Nilsonne,Olmo van den Akker,Casper Alberset al. eLife, 2021, 10, pp.e72185. ⟨10.7554/eLife.72185⟩ Article dans une revue inserm-03431812v1
The diffusion-simulated connectivity (DiSCo) dataset Jonathan Rafael-Patino,Gabriel Girard,Raphaël Truffet,Marco Pizzolato,Emmanuel Caruyeret al. Data in Brief, 2021, 38, pp.1-7. ⟨10.1016/j.dib.2021.107429⟩ Article dans une revue inserm-03366969v1
A 4D Basis and Sampling Scheme for the Tensor Encoded Multi-Dimensional Diffusion MRI Signal Alice Bates,Alessandro Daducci,Parastoo Sadeghi,Emmanuel Caruyer IEEE Signal Processing Letters, 2020, 27, pp.790-794. ⟨10.1109/LSP.2020.2991832⟩ Article dans une revue inserm-02881980v1
Freewater estimatoR using iNtErpolated iniTialization (FERNET): Characterizing peritumoral edema using clinically feasible diffusion MRI data Drew Parker,Abdol Aziz Ould Ismail,Ronald Wolf,Steven Brem,Simon Alexanderet al. PLoS ONE, 2020, 15 (5), pp.e0233645. ⟨10.1371/journal.pone.0233645⟩ Article dans une revue inserm-02884608v1
The challenge of mapping the human connectome based on diffusion tractography Klaus H Maier-Hein,Peter F. Neher,Christophe Houde,Marc-Alexandre Côté,Eleftherios Garyfallidiset al. Nature Communications, 2017, 8 (1), ⟨10.1038/s41467-017-01285-x⟩ Article dans une revue hal-01631578v1
Diffantom: Whole-Brain Diffusion MRI Phantoms Derived from Real Datasets of the Human Connectome Project Oscar Esteban,Emmanuel Caruyer,Alessandro Daducci,Meritxell Bach-Cuadra,María Ledesma-Carbayoet al. Frontiers in Neuroinformatics, 2016, 10, pp.4. ⟨10.3389/fninf.2016.00004⟩ Article dans une revue inserm-03219764v1
MAPL: Tissue Microstructure Estimation Using Laplacian-Regularized MAP-MRI and its Application to HCP Data Rutger H.J. Fick,Demian Wassermann,Emmanuel Caruyer,Rachid Deriche NeuroImage, 2016, 134, pp.365-385. ⟨10.1016/j.neuroimage.2016.03.046⟩ Article dans une revue hal-01291929v1
On facilitating the use of HARDI in population studies by creating rotation-invariant markers Emmanuel Caruyer,Ragini Verma Medical Image Analysis, 2015, 20 (1), pp.87-96. ⟨10.1016/j.media.2014.10.009⟩ Article dans une revue hal-01090154v1
lop-DWI: A Novel Scheme for Pre-Processing of Diffusion Weighted Images in the Gradient Direction Domain Farshid Sepehrband,Jeiran Choupan,Emmanuel Caruyer,Nyoman D. Kurniawan,Yaniv Galet al. Frontiers in Neurology, 2015, 5 (290), ⟨10.3389/fneur.2014.00290⟩ Article dans une revue hal-01103577v1
Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion MRI Alessandro Daducci,Erick Canales Rodgriguez,Maxime Descoteaux,Eleftherios Garyfallidis,Yaniv Guret al. IEEE Transactions on Medical Imaging, 2014, 99, pp.384-399. ⟨10.1109/TMI.2013.2285500⟩ Article dans une revue hal-00908289v1
A computational diffusion MRI and parametric dictionary learning framework for modeling the diffusion signal and its features Sylvain L. Merlet,Emmanuel Caruyer,Aurobrata Ghosh,Rachid Deriche Medical Image Analysis, 2013, pp.MEDIMA779. ⟨10.1016/j.media.2013.04.011⟩ Article dans une revue hal-00820817v1
Motion Detection in Diffusion MRI via Online ODF Estimation Emmanuel Caruyer,Iman Aganj,Christophe Lenglet,Guillermo Sapiro,Rachid Deriche International Journal of Biomedical Imaging, 2013, 2013 (Article ID 84936), pp.1-8. ⟨10.1155/2013/849363⟩ Article dans une revue hal-00798582v1
Design of multishell sampling schemes with uniform coverage in diffusion MRI Emmanuel Caruyer,Christophe Lenglet,Guillermo Sapiro,Rachid Deriche Magnetic Resonance in Medicine, 2013, 69 (6), pp.1534-1540. ⟨10.1002/mrm.24736⟩ Article dans une revue hal-00821688v1
Diffusion MRI Signal Reconstruction with Continuity Constraint and Optimal Regularization Emmanuel Caruyer,Rachid Deriche Medical Image Analysis, 2012, 16 (6), pp.1113-1120. ⟨10.1016/j.media.2012.06.011⟩ Article dans une revue hal-00711883v1

Pré-publication, Document de travail (3)

The fNIRS Reproducibility Study Hub (FRESH): Exploring Variability and Enhancing Transparency in fNIRS Neuroimaging Research Meryem Ayşe Yücel,Robert Luke,Rickson Coelho Mesquita,Alexander von Lühmann,David Marc Anton Mehleret al. 2024 Pré-publication, Document de travail inserm-05047351v1
Freewater EstimatoR using iNtErpolated iniTialization (FERNET): Toward Accurate Estimation of Free Water in Peritumoral Region Using Single-Shell Diffusion MRI Data Abdol Aziz Ould Ismail,Drew Parker,Moises Hernandez-Fernandez,Ronald Wolf,Steven Bremet al. 2019 Pré-publication, Document de travail inserm-02309753v1
Tractography-based connectomes are dominated by false-positive connections Klaus H Maier-Hein,Peter Neher,Jean-Christophe Houde,Marc-Alexandre Côté,Eleftherios Garyfallidiset al. 2016 Pré-publication, Document de travail hal-03007290v1

Ouvrages (1)

Le corps en images Laure Blanc-Féraud,Emmanuel Caruyer,Christian Jutten,Herve Liebgott CNRS, 2022, ISBN 9782271143280 Ouvrages inserm-03798417v1

HDR (1)

Numerical methods for white matter microstructure and brain structural connectivity in diffusion MRI Emmanuel Caruyer Computer science. Université de Rennes 1, 2022 HDR tel-03894045v1

Chapitre d'ouvrage (1)

Imagerie par résonance magnétique de diffusion Emmanuel Caruyer Le corps en images, pp.1-8, 2022 Chapitre d'ouvrage inserm-03798395v1

Thèse (1)

IRM de diffusion du Q-space : Acquisition et pré-traitements Emmanuel Caruyer Medical Imaging. Université Nice Sophia Antipolis, 2012. English. ⟨NNT : ⟩ Thèse tel-00750144v1

Rapport (1)

Online orientation distribution function reconstruction in constant solid angle and its application to motion detection in high angular resolution diffusion imaging Emmanuel Caruyer,Iman Aganj,Christophe Lenglet,Guillermo Sapiro,Rachid Deriche [Research Report] RR-7102, INRIA. 2009, pp.12 Rapport (rapport de recherche) inria-00432959v1

Mémoire d'étudiant (1)

Signal and Noise in Diffusion Magnetic Resonance Images Emmanuel Caruyer Medical Imaging. 2007 Mémoire d'étudiant dumas-00880381v1