Emmanuel Soubies Chargé de Recherche CNRS à l'IRIT.

Identifiants chercheurs

IdHAL :

emmanuel-soubies

ORCID :

0000-0003-0571-6983

IdRef :

198702949

Publications

Pré-publication, Document de travail (2)

Proximal Operators of Sorted Nonconvex Penalties Anne Gagneux,Mathurin Massias,Emmanuel Soubies 2025 Pré-publication, Document de travail hal-05338351v1
Optimization landscape of L0-Bregman relaxations Jonathan Chirinos-Rodriguez,Cédric Févotte,Emmanuel Soubies 2025 Pré-publication, Document de travail hal-05399073v1

Article dans une revue (27)

Spatially Variant Ultrasound Image Restoration with Product Convolution Arthur Floquet,Emmanuel Soubies,Duong-Hung Pham,Denis Kouamé IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, 2025, 72 (9), pp.1235 - 1244. ⟨10.1109/TUFFC.2025.3584533⟩ Article dans une revue hal-05051035v3
Convexity in ReLU Neural Networks: beyond ICNNs? Anne Gagneux,Mathurin Massias,Emmanuel Soubies,Rémi Gribonval Journal of Mathematical Imaging and Vision, 2025, 67 (4), pp.40. ⟨10.1007/s10851-025-01253-x⟩ Article dans une revue hal-04877619v2
Jackpot: Approximating Uncertainty Domains with Adversarial Manifolds Nathanaël Munier,Emmanuel Soubies,Pierre Weiss Journal of Machine Learning Research, 2025, 26 (251), pp.1-41 Article dans une revue hal-04744486v2
Exact continuous relaxations of l0-regularized criteria with non-quadratic data terms M'Hamed Essafri,Luca Calatroni,Emmanuel Soubies Journal of Global Optimization, 2025, ⟨10.1007/s10898-025-01527-z⟩ Article dans une revue hal-04451909v1
Fourier Analysis of Interference Scanning Optical Probe Microscopy Emmanuel Soubies,Wolfgang Bacsa IEEE Transactions on Computational Imaging, 2025, 11, pp.1206 - 1216. ⟨10.1109/TCI.2025.3603741⟩ Article dans une revue hal-04969247v2
Estimation of off-the-grid sparse spikes with over-parametrized projected gradient descent: theory and application Pierre-Jean Bénard,Yann Traonmilin,Jean-François Aujol,Emmanuel Soubies Inverse Problems, 2024, 40 (5), ⟨10.1088/1361-6420/ad33e4⟩ Article dans une revue hal-04220523v1
Automatic Tuning of Denoising Algorithms Parameters without Ground Truth Arthur Floquet,Sayantan Dutta,Emmanuel Soubies,Duong-Hung Pham,Denis Kouaméet al. IEEE Signal Processing Letters, 2024, 31, pp.381 - 385. ⟨10.1109/LSP.2024.3354554⟩ Article dans une revue hal-04344047v1
Surpassing light inhomogeneities in structured‐illumination microscopy with FlexSIM Emmanuel Soubies,Alejandro Nogueron,Florence Pelletier,Thomas Mangeat,Christophe Leterrieret al. Journal of Microscopy, 2024, 296 (1), pp.94--106. ⟨10.1111/jmi.13344⟩ Article dans une revue hal-04650218v1
The MLE is a reliable source: sharp performance guarantees for localization problems Nathanaël Munier,Emmanuel Soubies,Pierre Weiss Inverse Problems, 2023, 40 (1), pp.id.014001. ⟨10.1088/1361-6420/ad0dbb⟩ Article dans une revue hal-03811028v2
Sphere Refinement in Gap Safe Screening Cassio F. Dantas,Emmanuel Soubies,Cédric Févotte IEEE Signal Processing Letters, 2023, 30, p. 608-612. ⟨10.1109/LSP.2023.3277792⟩ Article dans une revue hal-03891840v2
Leveraging Joint-Diagonalization in Transform-Learning NMF Sixin Zhang,Emmanuel Soubies,Cédric Févotte IEEE Transactions on Signal Processing, 2022, ⟨10.1109/TSP.2022.3188177⟩ Article dans une revue hal-03481041v1
Direction-of-Arrival Estimation through Exact Continuous l20-Norm Relaxation Emmanuel Soubies,Adilson Chinatto,Pascal Larzabal,João M T Romano,Laure Blanc-Féraud IEEE Signal Processing Letters, 2021, 28, pp.16-20. ⟨10.1109/LSP.2020.3042771⟩ Article dans une revue hal-03047201v1
Expanding boundaries of Gap Safe screening Cassio F. Dantas,Emmanuel Soubies,Cédric Févotte Journal of Machine Learning Research, 2021, 22 (236), pp.1-57 Article dans une revue hal-03147502v3
Optical diffraction tomography from single-molecule localization microscopy Thanh-An Pham,Emmanuel Soubies,Ferréol Soulez,Michael Unser Optics Communications, 2021, 499, pp.127290. ⟨10.1016/j.optcom.2021.127290⟩ Article dans une revue hal-03290069v1
On the Identifiability of Transform Learning for Non-negative Matrix Factorization Sixin Zhang,Emmanuel Soubies,Cédric Févotte IEEE Signal Processing Letters, 2020, 27, pp.1555 - 1559. ⟨10.1109/LSP.2020.3020431⟩ Article dans une revue hal-02542653v5
Three-Dimensional Optical Diffraction Tomography with Lippmann-Schwinger Model Thanh-An Pham,Emmanuel Soubies,Ahmed Ayoub,Joowon Lim,Demetri Psaltiset al. IEEE Transactions on Computational Imaging, 2020, 6 (1), pp.727-738. ⟨10.1109/TCI.2020.2969070⟩ Article dans une revue hal-02457399v1
New Insights on the Optimality Conditions of the l2-l0 Minimization Problem Emmanuel Soubies,Laure Blanc-Féraud,Gilles Aubert Journal of Mathematical Imaging and Vision, 2020, Special Issue on Memory of Mila Nikolova, 62, pp.808-824. ⟨10.1007/s10851-019-00917-9⟩ Article dans une revue hal-02144528v2
Joint Angular Refinement and Reconstruction for Single-Particle Cryo-EM Mona Zehni,Laurène Donati,Emmanuel Soubies,Zhizhen J. Zhao,Michael Unser IEEE Transactions on Image Processing, 2020, ⟨10.1109/TIP.2020.2984313⟩ Article dans une revue hal-02516898v1
Computational Super-Sectioning for Single-Slice Structured-Illumination Microscopy Emmanuel Soubies,Michael Unser IEEE Transactions on Computational Imaging, 2019, 5 (2), pp.240-250. ⟨10.1109/TCI.2018.2887136⟩ Article dans une revue hal-02428166v1
The Sliding Frank-Wolfe Algorithm and its Application to Super-Resolution Microscopy Quentin Denoyelle,Vincent Duval,Gabriel Peyré,Emmanuel Soubies Inverse Problems, In press, ⟨10.1088/1361-6420/ab2a29⟩ Article dans une revue hal-01921604v1
Nanometric axial resolution of fibronectin assembly units achieved with an efficient reconstruction approach for multi-angle-TIRF microscopy Emmanuel Soubies,Agata Radwanska,Dominique Grall,Laure Blanc-Féraud,Ellen van Obberghen-Schillinget al. Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-018-36119-3⟩ Article dans une revue hal-02017844v1
Pocket Guide to Solve Inverse Problems with GlobalBioIm Emmanuel Soubies,Ferréol Soulez,Michael T. Mccann,Thanh-An Pham,Laurène Donatiet al. Inverse Problems, 2019, 35 (10), pp.104006. ⟨10.1088/1361-6420/ab2ae9⟩ Article dans une revue hal-02162546v1
Versatile reconstruction framework for diffraction tomography with intensity measurements and multiple scattering Thanh-An Pham,Emmanuel Soubies,Alexandre Goy,Joowon Lim,Ferréol Soulezet al. Optics Express, 2018, 26 (3), pp.2749-2763. ⟨10.1364/OE.26.002749⟩ Article dans une revue insu-01690828v1
A Unified View of Exact Continuous Penalties for l2-l0 Minimization Emmanuel Soubies,Laure Blanc-Féraud,Gilles Aubert SIAM Journal on Optimization, 2017, 27 (3), ⟨10.1137/16M1059333⟩ Article dans une revue hal-01267701v2
Efficient inversion of multiple-scattering model for optical diffraction tomography Emmanuel Soubies,Thanh-An Pham,Michael Unser Optics Express, 2017, 25 (18), pp.21786. ⟨10.1364/OE.25.021786⟩ Article dans une revue hal-02428165v1
ERRATUM: A Continuous Exact l0 penalty (CEL0) for least squares regularized problem Emmanuel Soubies,Laure Blanc-Féraud,Gilles Aubert SIAM Journal on Imaging Sciences, 2016, 9 (1), pp.490-494. ⟨10.1137/15M1038384⟩ Article dans une revue hal-01267679v1
A Continuous Exact l0 penalty (CEL0) for least squares regularized problem Emmanuel Soubies,Laure Blanc-Féraud,Gilles Aubert SIAM Journal on Imaging Sciences, 2015, 8 (3), pp. 1607-1639 (33 p.). ⟨10.1137/151003714⟩ Article dans une revue hal-01102492v2

Communication dans un congrès (36)

Learning Weighted Least Squares Data Term for Poisson Image Deconvolution Abhijit Singh,Emmanuel Soubies,Caroline Chaux IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), Apr 2025, Hyderabad, India. ⟨10.1109/ICASSP49660.2025.10888144⟩ Communication dans un congrès hal-04887464v1
Jackpot 2.0 : variété d'incertitude pour les problèmes inverses Nathanaël Munier,Emmanuel Soubies,Pierre Weiss XXXe Colloque Francophone de Traitement du Signal et des Images (GRETSI), Aug 2025, Strasbourg, France Communication dans un congrès hal-05144957v1
How to improve expressivity of convex ReLU neural networks? Anne Gagneux,Mathurin Massias,Emmanuel Soubies,Rémi Gribonval GRETSI 2025 - XXXème Colloque Francophone de Traitement du Signal et des Images, Aug 2025, Strasbourg, France Communication dans un congrès hal-05216923v1
Algorithm unrolling for solving inverse problems in signal and image processing Caroline Chaux,Abhijit Singh,Emmanuel Soubies,Vincent Tan AI4X, Jul 2025, Singapour, Singapore Communication dans un congrès hal-05391442v1
Regularization path via L0 Bregman relaxations Mhamed Essafri,Luca Calatroni,Emmanuel Soubies GRETSI, Aug 2025, Strasbourg, France Communication dans un congrès hal-05184157v1
Box-constrained L0 Bregman relaxations Mhamed Essafri,Luca Calatroni,Emmanuel Soubies European Signal Processing Conference (EUSIPCO), European Association for Signal Processing (EURASIP), Sep 2025, Palerme (Italie), Italy Communication dans un congrès hal-05114194v1
On L0 Bregman-Relaxations for Kullback-Leibler Sparse Regression Mhamed Essafri,Luca Calatroni,Emmanuel Soubies MLSP 2024 - IEEE 34th International Workshop on Machine Learning for Signal Processing, Sep 2024, London, United Kingdom. pp.1-6, ⟨10.1109/MLSP58920.2024.10734806⟩ Communication dans un congrès hal-04771394v1
Algorithmes de visualisation de non-identifiabilité Nathanaël Munier,Emmanuel Soubies,Pierre Weiss XXIXème Colloque Francophone de Traitement du Signal et des Images (GRETSI 2023), Groupe de Recherche et d'Etudes de Traitement du Signal et des Images, Aug 2023, Grenoble, France Communication dans un congrès hal-04138308v2
MAP-informed Unrolled Algorithms for Hyper-parameter Estimation Pascal Nguyen,Emmanuel Soubies,Caroline Chaux 2023 IEEE International Conference on Image Processing (ICIP), Oct 2023, Kuala Lumpur, Malaysia. pp.2160-2164, ⟨10.1109/ICIP49359.2023.10222154⟩ Communication dans un congrès hal-04153083v1
Deep Unrolling for Nonconvex Robust Principal Component Analysis Elizabeth Z. C. Tan,Caroline Chaux,Emmanuel Soubies,Vincent y F Tan IEEE MLSP 2023, Sep 2023, Rome, France. ⟨10.1109/MLSP55844.2023.10285962⟩ Communication dans un congrès hal-04160961v1
Optical Diffraction Tomography Meets Fluorescence Localization Microscopy Thanh-An Pham,Emmanuel Soubies,Ferréol Soulez,Michael Unser 1st International Symposium on Computational Sensing (ISCS 2023), Jun 2023, Luxembourg, Luxembourg Communication dans un congrès hal-04132428v1
Dictionary Learning with Statistical Sparsity in the Presence of Noise Shayan Aziznejad,Emmanuel Soubies,Michael Unser 28th European Signal Processing Conference - EUSIPCO 2020, Jan 2021, Amsterdam, Netherlands. pp.2026-2029 Communication dans un congrès hal-02966135v1
DIFFRACTION TOMOGRAPHY FROM SINGLE-MOLECULE LOCALIZATION MICROSCOPY: NUMERICAL FEASIBILITY Thanh-An Pham,Emmanuel Soubies,Ferréol Soulez,Michael Unser IEEE 18th International Symposium on Biomedical Imaging (ISBI), Apr 2021, Nice (Virtual), France Communication dans un congrès hal-03184774v1
Safe screening for sparse regression with the Kullback-Leibler divergence Cassio F. Dantas,Emmanuel Soubies,Cédric Févotte IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), Jun 2021, Toronto (virtual), Canada Communication dans un congrès hal-03147345v2
User-friendly Building of Reconstruction Algorithms with GlobalBioIm Laurène Donati,Emmanuel Soubies,Michael Unser Quantitative BioImaging Conference 2020, Jan 2020, Oxford, United Kingdom Communication dans un congrès hal-02433452v1
Adaptive Regularization for Three-dimensional Optical Diffraction Tomography Thanh-An Pham,Emmanuel Soubies,Ahmed Ayoub,Demetri Psaltis,Michael Unser , 2020 IEEE 16th International Symposium on Biomedical Imaging (ISBI), Apr 2020, Iowa City, United States. ⟨10.1109/ISBI45749.2020.9098523⟩ Communication dans un congrès hal-02444659v2
The Sliding Frank-Wolfe Algorithm for the BLASSO Quentin Denoyelle,Vincent Duval,Gabriel Peyré,Emmanuel Soubies Workshop on Signal Processing with Adaptative Sparse Structured Representations - SPARS 2019, Sep 2019, Toulouse, France Communication dans un congrès hal-03012568v1
On the Local Minimizers of the CEL0 Relaxation Emmanuel Soubies,Laure Blanc-Féraud,Gilles Aubert SPARS 2019 - Signal Processing with Adaptive Sparse Structured Representations - Workshop, Jul 2019, Toulouse, France Communication dans un congrès hal-02263782v1
Closed-Form Expression of the Fourier Ring-Correlation for Single-Molecule Localization Microscopy Thanh-An Pham,Emmanuel Soubies,Daniel Sage,Michael Unser ISBI 2019 - IEEE International Symposium on Biomedical Imaging, Apr 2019, Venise, Italy Communication dans un congrès hal-02048083v1
Joint density map and continuous angular refinement in cryo-electron microscopy Mona Zehni,Lauréne Donati,Emmanuel Soubies,Zhizhen Zhao,Minh Doet al. IS&T International Symposium on Electronic Imaging, Jan 2019, Burlingame, United States. pp.133-1-133-5, ⟨10.2352/ISSN.2470-1173.2019.13.COIMG-133⟩ Communication dans un congrès hal-02428184v1
Improving 3D MA-TIRF Reconstruction with Deconvolution and Background Estimation Emmanuel Soubies,Laure Blanc-Féraud,Sébastien Schaub,Ellen van Obberghen-Schilling IEEE International Symposium on Biomedical Imaging, Apr 2019, Venise, Italy. ⟨10.1109/ISBI.2019.8759103⟩ Communication dans un congrès hal-02017862v1
Inner-Loop Free ADMM for Cryo-EM Lauréne Donati,Emmanuel Soubies,Michael Unser ISBI 2019 - IEEE International Symposium on Biomedical Imaging, Apr 2019, Venise, Italy Communication dans un congrès hal-02048101v1
PHASELESS DIFFRACTION TOMOGRAPHY WITH REGULARIZED BEAM PROPAGATION Thanh-An Pham,Emmanuel Soubies,Joowon Lim,Alexandre Goy,Ferréol Soulezet al. IEEE International Symposium on Biomedical Imaging (ISBI), 2018, Washington, United States. ⟨10.1109/isbi.2018.8363802⟩ Communication dans un congrès hal-01978525v1
High density molecule localization for super-resolution microscopy using CEL0 based sparse approximation Simon Gazagnes,Emmanuel Soubies,Laure Blanc-Féraud ISBI 2017 - IEEE International Symposium on Biomedical Imaging, Apr 2017, Melbourne, Australia. pp.4, ⟨10.1109/ISBI.2017.7950460⟩ Communication dans un congrès hal-01443565v1
GlobalBioIm: A Unifying Computational Framework for Solving Inverse Problems Michael Unser,Emmanuel Soubies,Ferréol Soulez,Michael Mccann,Laurène Donati OSA Imaging and Applied Optics Congress on Computational Optical Sensing and Imaging (COSI'17), 2017, San Francisco, United States Communication dans un congrès insu-01632807v1
Quelles relaxations continues pour le critère $l2-l0$ ? Emmanuel Soubies,Laure Blanc-Féraud,Gilles Aubert Colloque Gretsi, Sep 2017, Juan-Les-Pins, France. pp.4 Communication dans un congrès hal-01560319v1
Some results on sparse L2-L0 reconstruction: Continuous Exact L0 penalties Laure Blanc-Féraud,Emmanuel Soubies,Gilles Aubert NCMIP 2016 - New Computational Methods for Inverse Problem , ENS Cachan, Apr 2016, Cachan, France Communication dans un congrès hal-01349670v1
Some results on sparse L2-L0 reconstruction: Continuous Exact L0 penalties Laure Blanc-Féraud,Emmanuel Soubies,Gilles Aubert Workshop ATLAS on mathematical and algorithmimcal approaches for high dimensional problems in data sciences. , GdR MaDICS, May 2016, Grenoble, France Communication dans un congrès hal-01358112v1
A Framework for Multi-angle Tirf Microscope Calibration Emmanuel Soubies,Sébastien Schaub,Agata Radwanska,Ellen van Obberghen-Schilling,Laure Blanc-Féraudet al. ISBI - International Symposium on Biomedical Imaging, Apr 2016, Prague, Czech Republic. pp.4, ⟨10.1109/ISBI.2016.7493355⟩ Communication dans un congrès hal-01257736v1
CEL0: a continuous alternative to l0 penalty Emmanuel Soubies,Laure Blanc-Féraud,Gilles Aubert Signal Processing with Adaptive Sparse Structured Representations (SPARS), Jul 2015, Cambridge, United Kingdom Communication dans un congrès hal-01167192v1
Cells Detection Using Segmentation Competition Emmanuelle Poulain,Sylvain Prigent,Emmanuel Soubies,Xavier Descombes ISBI - International Symposium on Biomedical Imaging, Apr 2015, Brooklyn, United States. ⟨10.1109/ISBI.2015.7164090⟩ Communication dans un congrès hal-01113167v1
L0-Optimization for Channel and DOA Sparse Estimation Adilson Chinatto,Emmanuel Soubies,Cynthia Junqueira,Joâo M. T. Romano,Pascal Larzabalet al. International Workshop on Computational Advances in Multi-Sensor Adaptive Processing (CAMSAP), Dec 2015, Cancun, Mexico. pp.305-308, ⟨10.1109/CAMSAP.2015.7383797⟩ Communication dans un congrès hal-01212042v1
Seuillage CEL0 pour la minimisation l2- l0 : comparaisons avec IHT Emmanuel Soubies,Laure Blanc-Féraud,Gilles Aubert Colloque Gretsi, Sep 2015, Lyon, France. pp.4 Communication dans un congrès hal-01169557v1
A 3D model with shape prior information for biological structures reconstruction using Multiple-Angle Total Internal Reflection Fluorescence Microscopy Emmanuel Soubies,Laure Blanc-Féraud,Sébastien Schaub,Gilles Aubert ISBI - International Symposium on Biomedical Imaging, Apr 2014, Beijing, China. pp.608 - 611, ⟨10.1109/ISBI.2014.6867944⟩ Communication dans un congrès hal-00914998v1
Sparse reconstruction from Multiple-Angle Total Internal Reflection Fluorescence Microscopy Emmanuel Soubies,Laure Blanc-Féraud,Sébastien Schaub,Gilles Aubert ICIP - International Conference on Image Processing, Oct 2014, Paris, France. pp.2844 - 2848, ⟨10.1109/ICIP.2014.7025575⟩ Communication dans un congrès hal-01037895v1
A 3D segmentation algorithm for ellipsoidal shapes. Application to nuclei extraction. Emmanuel Soubiès,Pierre Weiss,Xavier Descombes ICPRAM - International Conference on Pattern Recognition Applications and Methods, Feb 2013, Barcelona, Spain. pp.97-105 Communication dans un congrès hal-00733187v1

Chapitre d'ouvrage (2)

Exploring instabilities of inverse problem solvers with low-dimensional manifolds Nathanaël Munier,Emmanuel Soubies,Pierre Weiss Alemdar Hasanov Hasanoğlu, Roman Novikov, Karel Van Bockstal. Inverse Problems: Modelling and Simulation. Extended Abstracts of the IPMS Conference 2024, Birkhäuser Cham, 2025, 978-3-031-87212-9 Chapitre d'ouvrage hal-04753218v1
Graph Cut Based Segmentation of Predefined Shapes: Applications to Biological Imaging Emmanuel Soubies,Pierre Weiss,Xavier Descombes Pattern Recognition Applications and Methods., 318, Springer-Verlag, pp.153-170, 2015, Advances in Intelligent Systems and Computing, 978-3-319-12610-4. ⟨10.1007/978-3-319-12610-4_10⟩ Chapitre d'ouvrage hal-01088384v1

Rapport (1)

Accelerating Non-Negative and Bounded-Variable Linear Regression Algorithms with Safe Screening Cassio F. Dantas,Emmanuel Soubies,Cédric Févotte IRIT - Institut de Recherche en Informatique de Toulouse. 2023 Rapport hal-03564336v2