Erwan Corre Responsable du service Informatique et Bioinformatique de la Station Biologique de Roscoff. Responsable Scientifique de la plateforme ABiMS/IFB. Responsable du projet ciblé BYTESea du PEPR ATLASEA.

Identifiants chercheurs

IdHAL :

erwan-corre

ORCID :

0000-0001-6354-2278

IdRef :

154781142

VIAF :

207331618

ISNI :

0000000138896322

ResearcherID :

http://www.researcherid.com/rid/T-7166-2018

Présentation

Je suis responsable du Service Informatique et Bio-informatique de la FR2424 de la Station Biologique de Roscoff (SBR) (depuis février 2016) et responsable scientifique de la plateforme ABiMS (Analysis and Bioinformatic for Marine Science)- IFB.

Ce service est composé de 18 personnes (11 IR, 4 IE, 2 AI, 1T dont 7 personnes en CDD en octobre 2025).Mon activité de responsable répond à la double mission de Pilotage stratégique de la plateforme de bioinformatique et supervision de l’informatique de centre, en interface avec les utilisateurs internes et externes à la SBR.

Je suis responsable du travail des deux AI, du T et de l'IE en charge de l’environnement informatique (1800 points réseaux, 35 serveurs, 600 postes de travail, etc.) de la SBR. Je m’assure de la continuité et de la qualité de service et recherche les financements auprès des tutelles et des financeurs institutionnels.

Je pilote une plateforme de bio-informatique proposant une offre complète de services : calcul scientifique, analyse de données, ingénierie logicielle, gestion de données, formation. La plateforme ABiMS (Analysis and Bioinformatics for Marine Science) s'inscrit dans les infrastructures nationales IFB (Institut Français de Bioinformatique) et le pôle mer ODATIS de l'infrastructure DATA TERRA. ABiMS est porteuse ou impliquée dans plusieurs projets d'envergure nationale (BYTE-Sea (PEPR ATLASEA), MUDIS4LS (PIA), AO-EMBRC (PIA), FUTURE-OBS (PPR)) et 5 ANR. J’encadre une équipe d’ingénieurs et je leur donne leurs orientations.

En tant que bio-analyste, j'encadre et je réalise des projets de recherche d'analyse bio-informatique de données scientifiques en collaboration avec des équipes de la Station Biologique de Roscoff mais également avec d’autres équipes françaises et étrangères. Ce travail est valorisé par des publications régulières en tant que co-auteur et plusieurs communications (orales ou posters).

J’assure une veille technologique dans le domaine de la bio-informatique (logiciels, méthodes) et de la génomique (analyses haut débit). J'organise ou participe chaque année à plusieurs actions de formation à l'échelle nationale, régionale ou locale.

Publications

Article dans une revue (109)

Establishing the ELIXIR Microbiome Community Robert D Finn,Bachir Balech,Josephine Burgin,Physilia Chua,Erwan Correet al. F1000Research, 2025, 13, pp.50. ⟨10.12688/f1000research.144515.2⟩ Article dans une revue (article de synthèse) hal-04796156v1
Multiple, diverse endogenous giant virus elements within the genome of a brown alga Dean Mckeown,Alexandre Cormier,Declan Schroeder,Arnaud Couloux,Nachida Tadrentet al. Virus Evolution, 2025, 9 (11), pp.2127-2144. ⟨10.1093/ve/veaf009⟩ Article dans une revue hal-05363437v1
Transcriptomic analyses reveal sexual cues in reproductive life stages of uncultivated Acantharia (Radiolaria) Iris Rizos,Sarah Romac,Caroline Juery,Charlotte Berthelier,Johan Decelleet al. Protist, 2025, 177, pp.126102. ⟨10.1016/j.protis.2025.126102⟩ Article dans une revue hal-05127873v1
Multiple, diverse endogenous giant virus elements within the genome of a brown alga Dean Mckeown,Alexandre Cormier,Declan C Schroeder,Arnaud Couloux,Nachida Tadrentet al. Virus Evolution, 2025, 11 (1), ⟨10.1093/ve/veaf009⟩ Article dans une revue hal-04997831v1
Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems France Denoeud,Olivier Godfroy,Corinne Cruaud,Svenja Heesch,Zofia Nehret al. Cell, 2024, 187 (24), pp.6943-6965. ⟨10.1016/j.cell.2024.10.049⟩ Article dans une revue hal-04794231v1
Transcriptomic responses of Antarctic clam Laternula elliptica to nanoparticles, at single and combined exposures reveal ecologically relevant biomarkers Rodolfo Rondon,Catalina Valdés,Celine Cosseau,Elisa Bergami,César Antonio Cárdenaset al. Ecotoxicology and Environmental Safety, 2024, 280, pp.116523. ⟨10.1016/j.ecoenv.2024.116523⟩ Article dans une revue hal-04615510v1
Candidate genes involved in biosynthesis and degradation of the main extracellular matrix polysaccharides of brown algae and their probable evolutionary history Lisa Mazéas,Ahlem Bouguerba-Collin,J. Mark Cock,France Denoeud,Olivier Godfroyet al. BMC Genomics, 2024, 25 (1), pp.950. ⟨10.1186/s12864-024-10811-3⟩ Article dans une revue hal-04734202v1
Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies Hugo Doré,Ulysse Guyet,Jade Leconte,Gregory Farrant,Benjamin Alricet al. The International Society of Microbiologial Ecology Journal, 2023, 17 (5), pp.720-732. ⟨10.1038/s41396-023-01386-0⟩ Article dans une revue hal-04238382v2
SulfAtlas, the sulfatase database: state of the art and new developments Mark Stam,Pernelle Lelièvre,Mark Hoebeke,Erwan Corre,Tristan Barbeyronet al. Nucleic Acids Research, 2023, 51 (D1), pp.D647-D653. ⟨10.1093/nar/gkac977⟩ Article dans une revue hal-03948623v1
Insights into the potential for mutualistic and harmful host‐microbe interactions affecting brown alga freshwater acclimation Hetty Kleinjan,Clémence Frioux,Gianmaria Califano,Méziane Aite,Enora Fremyet al. Molecular Ecology, In press, 32 (3), pp.703-723. ⟨10.1111/mec.16766⟩ Article dans une revue hal-03868898v1
Comparative Population Transcriptomics Provide New Insight into the Evolutionary History and Adaptive Potential of World Ocean Krill Marvin Choquet,Felix Lenner,Arianna Cocco,Gaëlle Toullec,Erwan Correet al. Molecular Biology and Evolution, 2023, 40 (11), ⟨10.1093/molbev/msad225⟩ Article dans une revue (article de synthèse) hal-04707696v1
Coastal rocky reef fish monitoring in the context of the Marine Strategy Framework Directive: Environmental DNA metabarcoding complements underwater visual census Anaïs Rey,Frédérique Viard,Anne Lizé,Erwan Corre,Alice Valentiniet al. Ocean and Coastal Management, 2023, 241, pp.106625. ⟨10.1016/j.ocecoaman.2023.106625⟩ Article dans une revue hal-04123930v1
Expression of 20 SCPP genes during tooth and bone mineralization in Senegal bichir S Delgado,Ma Fernandez-Trujillo,G Houée,J Silvent,X Liuet al. Development Genes and Evolution, 2023, ⟨10.1007/s00427-023-00706-w⟩ Article dans une revue hal-04156960v1
The Rhodoexplorer Platform for Red Algal Genomics and Whole-Genome Assemblies for Several Gracilaria Species Agnieszka P Lipinska,Stacy A Krueger-Hadfield,Olivier Godfroy,Simon M Dittami,Lígia Ayres-Ostrocket al. Genome Biology and Evolution, 2023, 15 (7), pp.evad124. ⟨10.1093/gbe/evad124⟩ Article dans une revue hal-04190579v1
Comparative Thermophysiology of Marine Synechococcus CRD1 Strains Isolated From Different Thermal Niches in Iron-Depleted Areas Mathilde Ferrieux,Louison Dufour,Hugo Doré,Morgane Ratin,Audrey Guéneuguèset al. Frontiers in Microbiology, 2022, 13, pp.893413. ⟨10.3389/fmicb.2022.893413⟩ Article dans une revue hal-03768045v1
Genomic patterns of divergence in the early and late steps of speciation of the deep-sea vent thermophilic worms of the genus Alvinella Camille Thomas-Bulle,Denis Bertrand,Niranjan Nagarajan,Richard R Copley,Erwan Correet al. BMC Ecology and Evolution, 2022, 22, pp.106. ⟨10.1186/s12862-022-02057-y⟩ Article dans une revue hal-03770964v1
Structural and functional characterization of orcokinin B-like neuropeptides in the cuttlefish ($Sepia\ officinalis$) Maxime Endress,Céline Zatylny-Gaudin,Jérôme Leprince,Benjamin Lefranc,Erwan Correet al. Marine drugs, 2022, 20 (8), pp.505. ⟨10.3390/md20080505⟩ Article dans une revue hal-03777035v1
Global Phylogeography of Marine Synechococcus in Coastal Areas Reveals Strong Community Shifts Hugo Doré,Jade Leconte,Ulysse Guyet,Solène Breton,Gregory Farrantet al. mSystems, 2022, 7 (6), ⟨10.1128/msystems.00656-22⟩ Article dans une revue hal-03971550v2
Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR Robert Waterhouse,Anne-Françoise Adam-Blondon,Donat Agosti,Petr Baldrian,Bachir Balechet al. F1000Research, 2022, 10, pp.1238. ⟨10.12688/f1000research.73825.2⟩ Article dans une revue hal-04506390v1
Immuno-Enzymatic and Proteomic Approaches for Sexing the African Bonytongue (Heterotis niloticus Cuvier, 1829) N’zi Daniel Koua,Joël Henry,Erwan Corre,Julien Pontin,Benoît Bernayet al. Fishes, 2022, 7 (3), pp.106. ⟨10.3390/fishes7030106⟩ Article dans une revue hal-03798578v1
Inter-Specific Genetic Exchange Despite Strong Divergence in Deep-Sea Hydrothermal Vent Gastropods of the Genus Alviniconcha Jade Castel,Stéphane Hourdez,Florence Pradillon,Claire Daguin-Thiébaut,Marion Ballenghienet al. Genes, 2022, 13 (6), pp.985. ⟨10.3390/genes13060985⟩ Article dans une revue hal-03771381v1
Identification of a New Set of Polypeptidic Sex Pheromones from Cuttlefish (Sepia officinalis) Céline Zatylny-Gaudin,Erwan Corre,Bruno Zanuttini,Maxime Endress,Benoît Bernayet al. Marine Biotechnology, 2022, 24 (3), pp.574-587. ⟨10.1007/s10126-022-10126-y⟩ Article dans une revue hal-03959186v1
Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes Laurence Garczarek,Ulysse Guyet,Hugo Doré,Gregory Farrant,Mark Hoebekeet al. Nucleic Acids Research, 2021, 49 (D1), pp.D667-D676. ⟨10.1093/nar/gkaa958⟩ Article dans une revue hal-02988562v1
Different Early Responses of Laminariales to an Endophytic Infection Provide Insights About Kelp Host Specificity Qikun Xing,Miriam Bernard,Sylvie Rousvoal,Erwan Corre,Gabriel Markovet al. Frontiers in Marine Science, 2021, 8, ⟨10.3389/fmars.2021.742469⟩ Article dans une revue hal-03454704v1
Marine Synechococcus Picocyanobacteria: Light Utilization Across Latitudes Christophe Six,Morgane Ratin,Dominique Marie,Erwan Corre Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (38), pp.e2111300118. ⟨10.1073/pnas.2111300118⟩ Article dans une revue hal-03360215v1
Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes Richard G Dorrell,Adrien Villain,Benoît Perez-Lamarque,Guillemette Audren de Kerdrel,Giselle Mccallumet al. Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (4), ⟨10.1073/pnas.2009974118/-/DCSupplemental⟩ Article dans une revue mnhn-03969507v1
Marine Transcriptomics Analysis for the Identification of New Antimicrobial Peptides Baptiste Houyvet,Yolande Bouchon-Navaro,Claude Bouchon,Erwan Corre,Céline Zatylny-Gaudin Marine drugs, 2021, 19 (9), pp.490. ⟨10.3390/md19090490⟩ Article dans une revue hal-03329592v1
Low Transcriptomic Plasticity of Antarctic Giant Isopod Glyptonotus antarcticus Juveniles Exposed to Acute Thermal Stress Marcelo González-Aravena,Rodolfo Rondon,Alejandro Font,César A Cárdenas,Jean-Yves Toullecet al. Frontiers in Marine Science, 2021, 8, pp.761866. ⟨10.3389/fmars.2021.761866⟩ Article dans une revue hal-03901946v1
Zobellia roscoffensis sp. nov. and Zobellia nedashkovskayae sp. nov., two flavobacteria from the epiphytic microbiota of the brown alga Ascophyllum nodosum, and emended description of the genus Zobellia Tristan Barbeyron,Manon Thiébaud,Nolwen Le Duff,Marjolaine Martin,Erwan Correet al. International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (8), pp.004913. ⟨10.1099/ijsem.0.004913⟩ Article dans une revue hal-03357314v1
Robustness analysis of metabolic predictions in algal microbial communities based on different annotation pipelines Elham Karimi,Enora Geslain,Arnaud Belcour,Clémence Frioux,Méziane Aiteet al. PeerJ, 2021, 9, pp.1-24. ⟨10.7717/peerj.11344⟩ Article dans une revue hal-03223662v1
Differential normal skin transcriptomic response in total body irradiated mice exposed to scattered versus scanned proton beams Alexandre Leduc,Samia Chaouni,Frédéric Pouzoulet,Ludovic de Marzi,Frédérique Megnin-Chanetet al. Scientific Reports, 2021, 11 (1), pp.5876. ⟨10.1038/s41598-021-85394-0⟩ Article dans une revue hal-03169799v1
Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp Sarah Farhat,Phuong Le,Ehsan Kayal,Benjamin Noel,Estelle Bigeardet al. BMC Biology, 2021, 19 (1), ⟨10.1186/s12915-020-00927-9⟩ Article dans une revue hal-03114990v1
High-quality carnivoran genomes from roadkill samples enable comparative species delineation in aardwolf and bat-eared fox Rémi Allio,Marie-Ka Tilak,Celine Scornavacca,Nico L Avenant,Andrew C Kitcheneret al. eLife, 2021, 10, ⟨10.7554/eLife.63167⟩ Article dans une revue hal-03147106v1
High‐throughput sequencing on preservative ethanol is effective at jointly examining infraspecific and taxonomic diversity, although bioinformatics pipelines do not perform equally Marjorie Couton,Aurélien Baud,Claire Daguin-Thiébaut,Erwan Corre,Thierry Comtetet al. Ecology and Evolution, 2021, 11 (10), pp.5533 - 5546. ⟨10.1002/ece3.7453⟩ Article dans une revue hal-03235933v1
In-Depth In Silico Search for Cuttlefish (Sepia officinalis) Antimicrobial Peptides Following Bacterial Challenge of Haemocytes Louis Benoist,Baptiste Houyvet,Joël Henry,Erwan Corre,Bruno Zanuttiniet al. Marine drugs, 2020, 18 (9), pp.439. ⟨10.3390/md18090439⟩ Article dans une revue hal-02965337v1
Deciphering the Infectious Process of Colletotrichum lupini in Lupin through Transcriptomic and Proteomic Analysis Guillaume Dubrulle,Adeline Picot,Stéphanie Madec,Erwan Corre,Audrey Pawtowskiet al. Microorganisms, 2020, 8 (10), pp.1621. ⟨10.3390/microorganisms8101621⟩ Article dans une revue hal-03009610v1
Development of a relevant strategy using de novo transcriptome assembly method for transcriptome comparisons between Muscovy and common duck species and their reciprocal inter-specific mule and hinny hybrids fed ad libitum and overfed Xi Liu,Frédéric Herault,Christian Diot,Erwan Corre BMC Genomics, 2020, 21, ⟨10.1186/s12864-020-07099-4⟩ Article dans une revue hal-02956381v1
Synergic Effects of Temperature and Irradiance on the Physiology of the Marine Synechococcus Strain WH7803 Ulysse Guyet,Ngoc Thanh Nguyen,Hugo Doré,Julie Haguait,Justine Pitteraet al. Frontiers in Microbiology, 2020, 11, pp.e01707. ⟨10.3389/fmicb.2020.01707⟩ Article dans une revue hal-02929424v1
Identification and structural characterization of the factors involved in vitellogenesis and its regulation in the African Osteoglossiforme of aquacultural interest Heterotis niloticus (Cuvier, 1829) N'Zi Daniel Koua,Jesús Núñez-Rodríguez,Julie Orjuela,Céline Zatylny-Gaudin,Marie-Pierre Duboset al. General and Comparative Endocrinology, 2020, pp.113532. ⟨10.1016/j.ygcen.2020.113532⟩ Article dans une revue hal-02867550v1
Metabolic Complementarity Between a Brown Alga and Associated Cultivable Bacteria Provide Indications of Beneficial Interactions Bertille Burgunter-Delamare,Hetty Kleinjan,Clémence Frioux,Enora Fremy,Margot Wagneret al. Frontiers in Marine Science, 2020, 7, pp.1-11. ⟨10.3389/fmars.2020.00085⟩ Article dans une revue hal-02866101v2
Alterocin, an Antibiofilm Protein Secreted by Pseudoalteromonas sp. Strain 3J6 Albane Jouault,Angélique Gobet,Marjolaine Simon,Emilie Portier,Morgan Perennouet al. Applied and Environmental Microbiology, 2020, 86 (20), pp.e00893-20. ⟨10.1128/AEM.00893-20⟩ Article dans une revue hal-03027967v1
Cryptic species in the parasitic Amoebophrya species complex revealed by a polyphasic approach Ruibo Cai,Ehsan Kayal,Catharina Alves-De-Souza,Estelle Bigeard,Erwan Correet al. Scientific Reports, 2020, 10 (1), pp.2531. ⟨10.1038/s41598-020-59524-z⟩ Article dans une revue hal-02377799v3
Transcriptomic Responses to Darkness and the Survival Strategy of the Kelp Saccharina latissima in the Early Polar Night Huiru Li,Lydia Scheschonk,Sandra Heinrich,Klaus Valentin,Lars Harmset al. Frontiers in Marine Science, 2020, 7, pp.592033. ⟨10.3389/fmars.2020.592033⟩ Article dans une revue hal-04012668v1
Evolutionary Mechanisms of Long-Term Genome Diversification Associated With Niche Partitioning in Marine Picocyanobacteria Hugo Doré,Gregory Farrant,Ulysse Guyet,Julie Haguait,Florian Humilyet al. Frontiers in Microbiology, 2020, 11, pp.e567431. ⟨10.3389/fmicb.2020.567431⟩ Article dans une revue hal-02938656v1
The genome of Ectocarpus subulatus – A highly stress-tolerant brown alga Simon M. Dittami,Erwan Corre,Loraine Brillet-Guéguen,Agnieszka Lipinska,Noé Pontoizeauet al. Marine Genomics, 2020, 52, pp.100740. ⟨10.1016/j.margen.2020.100740⟩ Article dans une revue hal-02866117v1
Diversity of Light Sensing Molecules and Their Expression During the Embryogenesis of the Cuttlefish (Sepia officinalis) Morgane Bonadè,Atsushi Ogura,Erwan Corre,Yann Bassaglia,Laure Bonnaud-Ponticelli Frontiers in Physiology, 2020, 11, pp.521989. ⟨10.3389/fphys.2020.521989⟩ Article dans une revue hal-02989850v1
Genome Sequences of 72 Bacterial Strains Isolated from Ectocarpus subulatus: A Resource for Algal Microbiology Elham Karimi,Enora Geslain,Hetty Kleinjan,Gwenn Tanguy,Erwan Legeayet al. Genome Biology and Evolution, 2020, 12 (1), pp.3647-3655. ⟨10.1093/gbe/evz278⟩ Article dans une revue hal-02553731v1
Inferring Biochemical Reactions and Metabolite Structures to Understand Metabolic Pathway Drift Arnaud Belcour,Jean Girard,Méziane Aite,Ludovic Delage,Camille Trottieret al. iScience, 2020, 23 (2), pp.100849. ⟨10.1016/j.isci.2020.100849⟩ Article dans une revue hal-01943880v2
Seascape genomics reveals population isolation in the reef-building honeycomb worm, Sabellaria alveolata (L.) Anna P Muir,Stanislas F Dubois,Rebecca E Ross,Louise B Firth,Antony M Knightset al. BMC Evolutionary Biology, 2020, 20 (1), ⟨10.1186/s12862-020-01658-9⟩ Article dans une revue hal-02935188v1
Omic Analysis of the Sepia officinalis White Body: New Insights into Multifunctionality and Haematopoiesis Regulation Louis Benoist,Erwan Corre,Benoit Bernay,Joël Henry,Céline Zatylny-Gaudin Journal of Proteome Research, 2020, 19 (8), pp.3072-3087. ⟨10.1021/acs.jproteome.0c00100⟩ Article dans une revue hal-02965333v1
Comparative genomics applied to Mucor species with different lifestyles Annie Lebreton,Erwan Corre,Jean-Luc Jany,Loraine Brillet-Guéguen,Carlos Pèrez-Arqueset al. BMC Genomics, 2020, 21 (1), pp.135. ⟨10.1186/s12864-019-6256-2⟩ Article dans une revue hal-02481326v1
Response of Downy Oak (Quercus pubescens Willd.) to Climate Change: Transcriptome Assembly, Differential Gene Analysis and Targeted Metabolomics Jean-Philippe Mévy,Béatrice B. Loriod,Xi Liu,Erwan Corre,Magali Torreset al. Plants, 2020, 9 (9), pp.1149. ⟨10.3390/plants9091149⟩ Article dans une revue hal-02945417v1
Dinoflagellate Host Chloroplasts and Mitochondria Remain Functional During Amoebophrya Infection Ehsan Kayal,Catharina Alves-De-Souza,Sarah Farhat,Lourdes Velo-Suarez,Joanne Monjolet al. Frontiers in Microbiology, 2020, 11, pp.600823. ⟨10.3389/fmicb.2020.600823⟩ Article dans une revue hal-03146011v1
Methanohalophilus profundi sp. nov., a methylotrophic halophilic piezophilic methanogen isolated from a deep hypersaline anoxic basin Stéphane L'Haridon,Hani Haroun,Erwan Corre,Erwan Roussel,Morgane Chalopinet al. Systematic and Applied Microbiology, 2020, 43 (5), pp.126107. ⟨10.1016/j.syapm.2020.126107⟩ Article dans une revue pasteur-03260922v1
Metabarcoding on planktonic larval stages: an efficient approach for detecting and investigating life cycle dynamics of benthic aliens Marjorie Couton,Thierry Comtet,Sabrina Le Cam,Erwan Corre,Frédérique Viard Management of Biological Invasions, 2019, 10 (4), pp.657-689. ⟨10.3391/mbi.2019.10.4.06⟩ Article dans une revue hal-02431784v1
First Viruses Infecting the Marine Diatom Guinardia delicatula Laure Arsenieff,Nathalie Simon,Fabienne Rigaut-Jalabert,Florence Le Gall,Samuel Chaffronet al. Frontiers in Microbiology, 2019, 9, pp.3235. ⟨10.3389/fmicb.2018.03235⟩ Article dans une revue hal-01994588v1
Comparative analysis of five Mucor species transcriptomes Annie Lebreton,Laurence Meslet-Cladière,Stéphanie Morin-Sardin,Emmanuel Coton,Jean-Luc Janyet al. Genomics, 2019, 111, pp.1306 - 1314. ⟨10.1016/j.ygeno.2018.09.003⟩ Article dans une revue hal-03488854v1
Transcriptomic analysis of clam extra pallial fluids reveals immunity and cytoskeleton alterations in the first week of Brown Ring Disease development Alexandra Rahmani,Erwan Corre,Gaelle Richard,Adeline Bidault,Christophe Lambertet al. Fish and Shellfish Immunology, 2019, 93, pp.940-948. ⟨10.1016/j.fsi.2019.08.025⟩ Article dans une revue hal-02409065v1
Temperature Modulates Sex-Biased Gene Expression in the Gametophytes of the Kelp Saccharina latissima Cátia Monteiro,Sandra Heinrich,Inka Bartsch,Klaus Valentin,Erwan Correet al. Frontiers in Marine Science, 2019, 6, pp.769. ⟨10.3389/fmars.2019.00769⟩ Article dans une revue hal-04012665v1
Is geographical variation driving the transcriptomic responses to multiple stressors in the kelp Saccharina latissima? Cátia Marina Machado Monteiro,Huiru Li,Kai Bischof,Inka Bartsch,Klaus Ulrich Valentinet al. BMC Plant Biology, 2019, 19, pp.513. ⟨10.1186/s12870-019-2124-0⟩ Article dans une revue hal-04012669v1
Stable isotope probing and metagenomics highlight the effect of plants on uncultured phenanthrene-degrading bacterial consortium in polluted soil François Thomas,Erwan Corre,Aurélie Cebron The International Society of Microbiologial Ecology Journal, 2019, 13 (7), pp.1814-1830. ⟨10.1038/s41396-019-0394-z⟩ Article dans une revue hal-02322773v1
Genome–Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus Delphine Nègre,Méziane Aite,Arnaud Belcour,Clémence Frioux,Loraine Brillet-Guéguenet al. Antioxidants , 2019, 8 (11), pp.564. ⟨10.3390/antiox8110564⟩ Article dans une revue hal-02395080v1
Adhesive gland transcriptomics uncovers a diversity of genes involved in glue formation in marine tube-building polychaetes Jean-Philippe Buffet,Erwan Corre,Evelyne Duvernois-Berthet,Jérôme Fournier,Pascal Jean Lopez Acta Biomaterialia, 2018, 72, pp.316-328. ⟨10.1016/j.actbio.2018.03.037⟩ Article dans une revue hal-02323016v1
Design of antimicrobial peptides from a cuttlefish database Baptiste Houyvet,Bruno Zanuttini,Erwan Corre,Gildas Le Corguillé,Joël Henryet al. Amino Acids, 2018, 50 (11), pp.1573-1582. ⟨10.1007/s00726-018-2633-4⟩ Article dans une revue hal-01991164v1
Therapeutic Potential of a New Jumbo Phage That Infects Vibrio coralliilyticus, a Widespread Coral Pathogen Loïc Jacquemot,Yvan Bettarel,Joanne Monjol,Erwan Corre,Sebastien Halaryet al. Frontiers in Microbiology, 2018, 9, pp.2501. ⟨10.3389/fmicb.2018.02501⟩ Article dans une revue hal-01913634v1
Complete Genome Sequence of the Halophilic Methylotrophic Methanogen Archaeon Methanohalophilus portucalensis Strain FDF-1(T) Stéphane L'Haridon,Erwan Corre,Yue Guan,Manikandan Vinu,Violetta La Conoet al. Microbiology Resource Announcements, 2018, 6 (3), pp.01482-17. ⟨10.1128/genomeA.01482-17⟩ Article dans une revue hal-02372884v1
Analysis of the genomic basis of functional diversity in dinoflagellates using a transcriptome-based sequence similarity network. Arnaud Meng,Erwan Corre,Ian Probert,Andres Gutierrez-Rodriguez,Raffaele Sianoet al. Molecular Ecology, 2018, 27 (10), pp.2365-2380. ⟨10.1111/mec.14579⟩ Article dans une revue hal-02879300v1
Identification of a moronecidin-like antimicrobial peptide in the venomous fish Pterois volitans: Functional and structural study of pteroicidin-α Baptiste Houyvet,Yolande Bouchon-Navaro,Claude Bouchon,Didier Goux,Benoît Bernayet al. Fish and Shellfish Immunology, 2018, 72, pp.318-324. ⟨10.1016/j.fsi.2017.11.003⟩ Article dans une revue istex hal-01991168v1
A de novo approach to disentangle partner identity and function in holobiont systems Arnaud Meng,Camille Marchet,Erwan Corre,Pierre Peterlongo,Adriana A. Albertiet al. Microbiome, 2018, pp.1-35. ⟨10.1186/s40168-018-0481-9⟩ Article dans une revue hal-01643153v2
Translatome analysis at the egg-to-embryo transition in sea urchin Héloïse Chassé,Julie Aubert,Sandrine Boulben,Gildas Le corguillé,Erwan Correet al. Nucleic Acids Research, 2018, 46 (9), pp.4607 - 4621. ⟨10.1093/nar/gky258⟩ Article dans une revue hal-01803500v1
Crustacean cardioactive peptides Expression, localization, structure, and a possible involvement in regulation of egg-laying in the cuttlefish Sepia officinalis Maxime Endress,Céline Zatylny-Gaudin,Erwan Corre,Gildas Le Corguille,Louis Benoistet al. General and Comparative Endocrinology, 2018, 260, pp.67-79. ⟨10.1016/j.ygcen.2017.12.009⟩ Article dans une revue hal-01744294v1
Dietary aquaculture by-product hydrolysates: impact on the transcriptomic response of the intestinal mucosa of European seabass (Dicentrarchus labrax) fed low fish meal diets Alexandre Leduc,Céline Zatylny-Gaudin,Marie Robert,Erwan Corre,Gildas Le Corguilleet al. BMC Genomics, 2018, 19, pp.396. ⟨10.1186/s12864-018-4780-0⟩ Article dans une revue hal-01973434v1
Comparative Time-Scale Gene Expression Analysis Highlights the Infection Processes of Two Amoebophrya Strains Sarah Farhat,Isabelle Florent,Benjamin Noël,Ehsan Kayal,Corinne da Silvaet al. Frontiers in Microbiology, 2018, 9, pp.2251. ⟨10.3389/fmicb.2018.02251⟩ Article dans une revue hal-02126891v1
Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms Adrien Bussard,Erwan Corre,Cédric Hubas,Evelyne E. Duvernois-Berthet,Gildas Le Corguilléet al. Environmental Microbiology, 2017, 19 (3), pp.909-925. ⟨10.1111/1462-2920.13398⟩ Article dans une revue mnhn-02283645v1
A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals Paul Simion,Herve Philippe,Denis Baurain,Muriel Jager,Daniel J. Richteret al. Current Biology, 2017, 27 (7), pp.958-967. ⟨10.1016/j.cub.2017.02.031⟩ Article dans une revue hal-01681528v1
Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus Alexandre Cormier,Komlan Avia,Lieven Sterck,Thomas Derrien,Valentin Wucheret al. New Phytologist, 2017, 214 (1), pp.219-232. ⟨10.1111/nph.14321⟩ Article dans une revue hal-03145812v1
Detection of bacterial contaminants and hybrid sequences in the genome of the kelp Saccharina japonica using Taxoblast Simon Dittami,Erwan Corre PeerJ, 2017, 5, pp.e4073. ⟨10.7717/peerj.4073⟩ Article dans une revue hal-01654700v1
Complete Genome Sequence of Methanohalophilus halophilus DSM 3094(T), Isolated from a Cyanobacterial Mat and Bottom Deposits at Hamelin Pool, Shark Bay, Northwestern Australia Stéphane L'Haridon,Erwan Corre,Yue Guan,Manikandan Vinu,Violetta La Conoet al. Microbiology Resource Announcements, 2017, 5 (7), pp.01604-16. ⟨10.1128/genomeA.01604-16⟩ Article dans une revue hal-02372885v1
Chloropicophyceae, a new class of picophytoplanktonic prasinophytes Adriana Lopes dos Santos,Thibaut Pollina,Priscillia Gourvil,Erwan Corre,Dominique Marieet al. Scientific Reports, 2017, 7, pp.14019. ⟨10.1038/s41598-017-12412-5⟩ Article dans une revue hal-01634064v1
Nitric Oxide Mediates Nitrite-Sensing and Acclimation and Triggers a Remodeling of Lipids Lina-Juana Dolch,Josselin Lupette,Guillaume Tourcier,Mariette Bedhomme,Séverine Collinet al. Plant Physiology, 2017, 175 (3), pp.1407 - 1423. ⟨10.1104/pp.17.01042⟩ Article dans une revue hal-01664940v1
Erratum to: Bioinformatics Pipeline for Transcriptome Sequencing Analysis Sarah Djebali,Valentin Wucher,Sylvain Foissac,Christophe Hitte,Erwan Correet al. Methods in Molecular Biology, 2017, 1468, pp.E1. ⟨10.1007/978-1-4939-4035-6_17⟩ Article dans une revue hal-01439359v1
Characterization of the neuropeptidome of a Southern Ocean decapod, the Antarctic shrimp Chorismus antarcticus : Focusing on a new decapod ITP-like peptide belonging to the CHH peptide family Jean-Yves Toullec,Erwan Corre,Perrine Mandon,Marcelo Gonzalez-Aravena,Céline Ollivauxet al. General and Comparative Endocrinology, 2017, 252, pp.60-78. ⟨10.1016/j.ygcen.2017.07.015⟩ Article dans une revue hal-01578105v1
Herbivore-induced chemical and molecular responses of the kelps Laminaria digitata and Lessonia spicata Andrés A Ritter,Léa Cabioch,Loraine A Brillet-Guéguen,Erwan A Corre,Audrey A Cosseet al. PLoS ONE, 2017, 12 (3), pp.e0173315. ⟨10.1371/journal.pone.0173315.s011⟩ Article dans une revue hal-01587420v1
The metagenomic data life-cycle: standards and best practices Petra ten Hoopen,Robert D. Finn,Lars Ailo Ailo Bongo,Erwan Corre,Bruno Fossoet al. GigaScience, 2017, 6 (8), ⟨10.1093/gigascience/gix047⟩ Article dans une revue hal-01593068v1
Responses of the arcto-boreal krill species Thysanoessa inermis to variations in water temperature: coupling Hsp70 isoform expressions with metabolism Kim Huenerlage,Kévin Cascella,Erwan Corre,Lola Toomey,Chi-Ying Leeet al. Cell Stress and Chaperones, 2016, 21 (6), pp.969 - 981. ⟨10.1007/s12192-016-0720-6⟩ Article dans une revue hal-01395071v1
Neuropeptidome of the Cephalopod Sepia officinalis : Identification, Tissue Mapping, and Expression Pattern of Neuropeptides and Neurohormones during Egg Laying Céline Zatylny-Gaudin,Valerie Cornet,Alexandre Leduc,Bruno Zanuttini,Erwan A Correet al. Journal of Proteome Research, 2015, 15 (1), pp.48-67. ⟨10.1021/acs.jproteome.5b00463⟩ Article dans une revue hal-02191510v1
How Egg Case Proteins Can Protect Cuttlefish Offspring? Valérie Cornet,Joël Henry,Didier Goux,Emilie Duval,Benoît Bernayet al. PLoS ONE, 2015, 10 (7), pp.e0132836. ⟨10.1371/journal.pone.0132836⟩ Article dans une revue hal-01991188v1
Sexual Dimorphism and the Evolution of Sex-Biased Gene Expression in the Brown Alga Ectocarpus Agnieszka Lipinska,Alexandre Cormier,Remy Luthringer,Akira F Peters,Erwan Correet al. Molecular Biology and Evolution, 2015, 32 (6), pp.1581-1597. ⟨10.1093/molbev/msv049⟩ Article dans une revue hal-01285048v1
Molecular characterization of peptide fractions of a Tilapia (Oreochromis niloticus) by-product hydrolysate and in vitro evaluation of antibacterial activity Marie Robert,Céline Zatylny-Gaudin,Vincent Fournier,Erwan Corre,Gildas Le Corguilléet al. Process Biochemistry, 2015, 50 (3), pp.487-492. ⟨10.1016/j.procbio.2014.12.022⟩ Article dans une revue istex hal-01991227v1
Diversification, Evolution and Sub-Functionalization of 70kDa Heat-Shock Proteins in Two Sister Species of Antarctic Krill: Differences in Thermal Habitats, Responses and Implications under Climate Change Kévin Cascella,Didier Jollivet,Claire Papot,Nelly Léger,Erwan Correet al. PLoS ONE, 2015, 10 (4), pp.e0121642. ⟨10.1371/journal.pone.0121642⟩ Article dans une revue hal-01142647v1
The Toll/NF-κB pathway in cuttlefish symbiotic accessory nidamental gland Valérie Cornet,Joël Henry,Erwan Corre,Gildas Le Corguillé,Céline Zatylny-Gaudin Developmental and Comparative Immunology, 2015, 53 (1), pp.42-46. ⟨10.1016/j.dci.2015.06.016⟩ Article dans une revue hal-01991195v1
Amelotin Gene Structure and Expression during Enamel Formation in the Opossum Monodelphis domestica Barbara Gasse,Xi Liu,Erwan Corre,Jean-Yves Sire PLoS ONE, 2015, 10 (7), pp.e0133314. ⟨10.1371/journal.pone.0133314⟩ Article dans une revue hal-01233552v1
WiseScaffolder: an algorithm for the semi-automatic scaffolding of Next Generation Sequencing data Gregory K. Farrant,Mark Hoebeke,Frédéric Partensky,Gwendoline Andres,Erwan Correet al. BMC Bioinformatics, 2015, 16 pp.281. ⟨10.1186/s12859-015-0705-y⟩ Article dans une revue hal-01193001v1
Transcriptome analyses to investigate symbiotic relationships between marine protists Sergio Balzano,Erwan Corre,Johan Decelle,Roberto Sierra,Patrick Winckeret al. Frontiers in Microbiology, 2015, 6, pp.98. ⟨10.3389/fmicb.2015.00098⟩ Article dans une revue hal-01143962v1
Comparative Transcriptome of Wild Type and Selected Strains of the Microalgae Tisochrysis lutea Provides Insights into the Genetic Basis, Lipid Metabolism and the Life Cycle Gregory Carrier,Matthieu Garnier,Loïc Le Cunff,Gaël Bougaran,Ian Probertet al. PLoS ONE, 2014, 9 (1), pp.e86889. ⟨10.1371/journal.pone.0086889⟩ Article dans une revue hal-01100651v1
Transcriptomic and peptidomic analysis of protein hydrolysates from the white shrimp (L. vannamei) Marie Robert,Céline Zatylny-Gaudin,Vincent Fournier,Erwan Corre,Gildas Le Corguilléet al. African Journal of Biotechnology, 2014, 186, pp.30-37 Article dans une revue hal-01991237v1
Dual role of the cuttlefish salivary proteome in defense and predation Valérie Cornet,Joël Henry,Erwan Corre,Gildas Le Corguillé,Bruno Zanuttiniet al. Journal of Proteomics, 2014, 108, pp.209-222. ⟨10.1016/j.jprot.2014.05.019⟩ Article dans une revue hal-01991240v1
A Haploid System of Sex Determination in the Brown Alga Ectocarpus sp. Sophia S. Ahmed,J. Mark Cock,Eugenie Pessia,Remy Luthringer,Alexandre Cormieret al. Current Biology, 2014, 24 (17), pp.1945-1957. ⟨10.1016/j.cub.2014.07.042⟩ Article dans une revue hal-01132642v1
Transcriptome and Peptidome Characterisation of the Main Neuropeptides and Peptidic Hormones of a Euphausiid: The Ice Krill, Euphausia crystallorophias Jean-Yves Toullec,Erwan Corre,Benoit Bernay,Michael A. S. Thorne,Kévin Cascellaet al. PLoS ONE, 2013, 8 (8), pp.e71609. ⟨10.1371/journal.pone.0071609⟩ Article dans une revue hal-01250917v1
The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium J. Mark Cock,Lieven Sterck,Sophia Ahmed,Andrew E. Allen,Grigoris Amoutziaset al. Advances in Botanical Research, 2012, 64, pp.141 - 184. ⟨10.1016/B978-0-12-391499-6.00005-0⟩ Article dans une revue hal-02649287v1
Conjugating effects of symbionts and environmental factors on gene expression in deep-sea hydrothermal vent mussels. Isabelle Boutet,Raymond Ripp,Odile Lecompte,Carole Dossat,Erwan Correet al. BMC Genomics, 2011, 12 (1), pp.530. ⟨10.1186/1471-2164-12-530⟩ Article dans une revue inserm-00642454v1
The $Ectocarpus$ genome and the independent evolution of multicellularity in brown algae J. Mark Cock,Lieven Sterck,Pierre Rouzé,Delphine Scornet,Andrew E. Allenet al. Nature, 2010, 465 (7298), pp.617-621. ⟨10.1038/nature09016⟩ Article dans une revue cea-00906990v1
A sequence-tagged genetic map for the brown alga Ectocarpus siliculosus provides large-scale assembly of the genome sequence Svenja Heesch,Ga Youn Cho,Akira F Peters,Gildas Le Corguillé,Cyril Falentinet al. New Phytologist, 2010, 188 (1), pp.42-51. ⟨10.1111/j.1469-8137.2010.03273.x⟩ Article dans une revue hal-01806415v1
Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress Simon M Dittami,Delphine Scornet,Jean-Louis Petit,Béatrice Segurens,Corinne da Silvaet al. Genome Biology, 2009, 10, pp.R66. ⟨10.1186/gb-2009-10-6-r66⟩ Article dans une revue hal-01806423v1
Plastid genomes of two brown algae, Ectocarpus siliculosus and Fucus vesiculosus: further insights on the evolution of red-algal derived plastids Gildas Le Corguillé,Gareth Pearson,Marta Valente,Carla Viegas,Bernhard Gschloesslet al. BMC Evolutionary Biology, 2009, 9, pp.253. ⟨10.1186/1471-2148-9-253⟩ Article dans une revue hal-01806420v1
Life-cycle-generation-specific developmental processes are modified in the immediate upright mutant of the brown alga Ectocarpus siliculosus Akira F. Peters,Delphine Scornet,Morgane Ratin,Bénédicte Charrier,Annabelle Monnieret al. Development (Cambridge, England), 2008, 135 (8), pp.1503-1512. ⟨10.1242/dev.016303⟩ Article dans une revue hal-01806436v1
Novel uncultured Epsilonproteobacteria dominate a filamentous sulphur mat from the 13°N hydrothermal vent field, East Pacific Rise Hélène Moussard,Erwan Corre,Marie-Anne Cambon-Bonavita,Yves Fouquet,Christian Jeanthon FEMS Microbiology Ecology, 2006, 58 (3), pp.449-463. ⟨10.1111/j.1574-6941.2006.00192.x⟩ Article dans une revue hal-00617025v1
NADPH oxidases in Eukaryotes: red algae provide new hints! Catherine Boyen,Cécile Herve,Thierry Tonon,Jonas Collen,Erwan Corre Current Genetics, 2006, 49, pp.190-207 Article dans une revue hal-00091933v1
Identification of stress gene transcripts in Laminaria digitata (Phaeophyceae) protoplast cultures by expressed sequence tag analysis Vincent Roeder,Jonas Collén,Sylvie Rousvoal,Erwan Corre,Catherine Leblancet al. Journal of Phycology, 2005, 41, pp.1227-1235. ⟨10.1111/j.1529-8817.2005.00150.x⟩ Article dans une revue istex hal-00098389v1

Communication dans un congrès (7)

Immune response of Mytilus edulis challenged with low-virulence and high-virulence isolates of F. halioticida Hélène Bouras,Erwan Corre,Benoit Bernay,Jean Louis Blin,Manuel Savaryet al. 22nd International Conference on Disease of Fish and Shellfish, European Association of Fish Pathologist; Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC) - Hellenic Center for Marine Research (HCMR), Sep 2025, Heraklion - Crète, Greece Communication dans un congrès hal-05240201v1
Methods for a species-specific genome-scale metabolic model designed for eukaryotes and applied to the Ascophyllum nodosum macroalga Pauline Hamon-Giraud,Benoît Bergk Pinto,Jeanne Got,Coralie Rousseau,Erwan Correet al. JOBIM 2025 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2025, Bordeaux, France. pp.109-117 Communication dans un congrès hal-05374724v1
Towards a genetic map for the brown alga Saccorhiza polyschides Svenja Heesch,Ga Youn Cho,Akira F. Peters,Gildas Le Corguillé,Cyril Falentinet al. German Botanical Society (DBG) meeting, Mar 2018, Berchtesgaden, Germany Communication dans un congrès hal-02947599v1
A transcriptomic approach to study marine plankton holobionts Arnaud Meng,Erwan Corre,Pierre Peterlongo,Camille Marchet,Adriana A. Albertiet al. International Conference on Holobionts, Apr 2017, Paris, France Communication dans un congrès hal-01575069v1
Nature, nurture and the structure of macroalgal genomes J. Mark Cock,Jonas Collen,Lieven Sterck,Pierre Rouzé,Delphine Scornetet al. 5. European Phycological Congress, Sep 2011, Rhodes, Greece Communication dans un congrès hal-02749757v1
BioDesc : gestion d'un entrepôt multiformat de descriptions de ressources bioinformatiques Philippe Picouet,Z. Doughi,Loraine Brillet,Erwan Corre,Christophe Caronet al. JOBIM, Sep 2010, Montpellier, France Communication dans un congrès inria-00540815v1
BioWorkFlow: Web Services toolkit and workflow applications evaluation to deploy a confidence network Marc Wessner,Martin Senger,Franck Samson,Philippe Picouet,François Moreewset al. Jobim (Journées Ouvertes Biologie Informatique Mathématiques), Jun 2008, Lille, France Communication dans un congrès inria-00327528v1

Poster de conférence (10)

BYTE-Sea: the digital infrastructure of ATLASea, the French marine genome sequencing programme Annie Lebreton,Loraine Brillet-Guéguen,Karine Massau,Alexandre Nicaise,Arthur Le Barset al. JOBIM 2025 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2025, Bordeaux, France. 2025 Poster de conférence hal-05135947v1
EuphausiiDB: A TRANSCRIPTOMIC REFERENCE DATABASE FOR KRILL SPECIES Triskell Cumunel,Fatoumata Binta Barry,Laure Lamothe,Mark Hoebeke,Andreas Wallberget al. JOBIM2025, Jul 2025, Bordeaux, France Poster de conférence hal-05144070v1
Biodiversity Genomic Data Management an IFB Initiative Clara Emery,Lucas Leclère,Eric Pelletier,Vincent Lefort,Yvan Le Braset al. JOBIM 2025, Jul 2025, Bordeaux, France Poster de conférence hal-05135435v1
The cuttlefish $Sepia\ officinalis$: a relevant invertebrate model for the study of Alzheimer's disease? Maureen Pred'Homme,Céline Zatylny-Gaudin,Nadège Villain-Naud,Marie-Pierre Dubos,Didier Gouxet al. FAAST 2025 - France Alzheimer Actualités Scientifiques et Thérapeutiques, Jun 2025, Paris, France. Poster de conférence hal-05548904v1
BYTE-Sea: the digital infrastructure of ATLASea, the French marine genome sequencing programme Karine Massau,Byte-Sea Consortium,Erwan Corre JOBIM 2024 - Journées ouvertes en biologie, informatique et mathématiques, Jun 2024, Toulouse, France. pp.1-1, 2024 Poster de conférence hal-04693601v1
MyGOD : Visualization and analysis interface for marine genomic observatories data Charlotte André,Mark Hoebeke,Nicolas Henry,Cyril Noel,Patrick Durandet al. JOBIM 2022, Jul 2022, Rennes, France. ⟨10.5281/zenodo.6451438⟩ Poster de conférence hal-04029627v1
Gene expression analysis of duck liver steatosis from hybrid and parental species Xi Liu,Frédéric Hérault,Christian Diot,Erwan Corre Journées Ouvertes Biologie, Informatique et Mathématiques (Jobim), Jul 2018, Marseille, France. , 2018, Abstracts Jobim 2018 Poster de conférence hal-01842089v1
TRANS-C³ - The Transcriptome of downy oak (Quercus pubescens Willd.) in Response to Climate Change Xi Liu,Béatrice Loriod,Stefano Caffarri,Erwan Corre,Jean-Philippe Mévy Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM), Jul 2018, Marseille, France Poster de conférence hal-01857993v1
DNA−SIP and metagenomic revealed shifts in active phenanthrene−degrading bacteria of rhizosphere and bulk soil from a historically contaminated site Aurélie Cébron,François Thomas,Erwan Corre 14th Symposium on Bacterial Genetics and Ecology, BAGECO, Jun 2017, Aberdeen, United Kingdom Poster de conférence hal-03145407v1
Transcriptomic response of intestine to low fish meal diet and dietary marine hydrolysates in european seabass (dicentrarchus labrax) Alexandre Leduc,Céline Zatylny-Gaudin,Erwan Corre,Antoine Lefevre-Scelles,Hélène Castelet al. International Conference of the European Aquaculture Society, Oct 2017, Dubrovnik, Croatia Poster de conférence hal-02340456v1

Chapitre d'ouvrage (2)

nBioinformatics Pipeline for Transcriptome Sequencing Analysis Sarah Djebali,Valentin Wucher,Sylvain Foissac,Christophe Hitte,Erwan Correet al. Enhancer RNAs : Methods and Protocols, 1468 (Chapter 14), Humana Press Inc., 2017, Methods in Molecular Biology, 978-1-4939-4033-2. ⟨10.1007/978-1-4939-4035-6_14⟩ Chapitre d'ouvrage hal-02788591v1
Bioinformatics Pipeline for Transcriptome Sequencing Analysis Sarah Djebali,Valentin Wucher,Sylvain Foissac,Christophe Hitte,Erwan Correet al. Enhancer RNAs - Methods and Protocols, 1468, Editions Springer, pp.E1-E1, 2017, Methods in Molecular Biology, 978-1-4939-4035-6. ⟨10.1007/978-1-4939-4035-6⟩ Chapitre d'ouvrage hal-02789209v1

Autre publication scientifique (1)

METdb: A GENOMIC REFERENCE DATABASE FOR MARINE SPECIES Guita Niang,Mark Hoebeke,Arnaud Meng,Xi Liu,Maxim Scheremetjewet al. 2020, ⟨10.7490/f1000research.1118000.1⟩ Autre publication scientifique hal-04394873v1

Pré-publication, Document de travail (3)

Global phylogeography of marine Synechococcus in coastal areas reveals strikingly different communities than in the open ocean Hugo Doré,Jade Leconte,Ulysse Guyet,Solène Breton,Gregory Farrantet al. 2022 Pré-publication, Document de travail hal-03834030v1
Changing microbial activities during low salinity acclimation in the brown alga Ectocarpus subulatus Hetty Kleinjan,Gianmaria Caliafano,Méziane Aite,Enora Fremy,Clémence Friouxet al. 2021 Pré-publication, Document de travail hal-03429533v1
The genome of Ectocarpus subulatus -a highly stress-tolerant brown alga Simon M. Dittami,Erwan Corre,Loraine Brillet-Guéguen,Agnieszka Lipinska,Méziane Aiteet al. 2019 Pré-publication, Document de travail hal-02333021v1

Rapport (3)

Plan de Gestion des Données : PEPR ATLASea : Atlas des génomes marins Erwan Corre,Jean-Marc Aury,Line Le Gall,Patrick Wincker,Hugues Roest Crollius Zenodo. 2024 Rapport (plan de gestion de données/data management plan) hal-04709361v1
EOSC-Life Report on the work of the Open Call Projects Arina Rybina,Pauline Audergon,Claudia Pfander,Bérénice Batut,Martin Beracocheaet al. 3.3, EMBL-HD; CSIC. 2023 Rapport hal-04185373v1
La surveillance de la biodiversité ichtyologique côtière par l'ADN environnemental : Évaluation de l'outil et de sa complémentarité aux comptages visuels en plongée - Rapport final, septembre 2021 Anaïs Rey,Frédérique Viard,Erwan Corre,Anne Lizé,Laurent Lévêqueet al. PatriNat (OFB-CNRS-MNHN). 2021, 85 p. + annexes Rapport mnhn-04168495v1

Thèse (1)

Approches moléculaires de la diversité microbienne de deux environnements extrêmes : les sources hydrothermales profondes et les réservoirs pétroliers Erwan Corre Biologie moléculaire. Université de Bretagne Occidentale, 2000. Français. ⟨NNT : ⟩ Thèse tel-01115381v1