Fabien HALKETT

113

Documents

Publications

	A mechanistic-statistical approach to infer dispersal and demography from invasion dynamics, applied to a plant pathogen Méline Saubin , Jérôme Coville , Constance Xhaard , Pascal Frey , Samuel Soubeyrand Peer Community Journal, 2024, 4, pp.e9. ⟨10.24072/pcjournal.356⟩ Journal articles hal-04430456v1
	Approximate Bayesian Computation applied to time series of population genetic data disentangles rapid genetic changes and demographic variations in a pathogen population Méline Saubin , Aurélien Tellier , Solenn Stoeckel , Axelle Andrieux , Fabien Halkett Molecular Ecology, 2023, ⟨10.1111/mec.16965⟩ Journal articles hal-04122413v1
	Improving sustainable crop protection using population genetics concepts Méline Saubin , Clémentine Louet , Lydia Bousset , Frédéric Fabre , Pascal Frey Molecular Ecology, 2023, 32 (10), pp.2461-2471. ⟨10.1111/mec.16634⟩ Journal articles hal-03394837v2
	A point mutation and large deletion at the candidate avirulence locus AvrMlp7 in the poplar rust fungus correlate with poplar RMlp7 resistance breakdown Clémentine Louet , Méline Saubin , Axelle Andrieux , Antoine Persoons , Mathilde Gorse Molecular Ecology, 2023, 32 (10), pp.2472-2483. ⟨10.1111/mec.16294⟩ Journal articles hal-03510966v1
	Airborne versus soilborne inoculum: White mould, where do you come from? Christel Leyronas , Fabien Halkett , Vincent Faloya Plant Pathology, 2023, 72 (4), pp.651-839. ⟨10.1111/ppa.13699⟩ Journal articles hal-03951281v1
	Genomic Signatures of a Major Adaptive Event in the Pathogenic Fungus Melampsora larici-populina Antoine Persoons , Agathe Maupetit , Clémentine Louet , Axelle Andrieux , Anna Lipzen Genome Biology and Evolution, 2022, 14 (1), 14 p. ⟨10.1093/gbe/evab279⟩ Journal articles hal-03606205v1
	Evolution of morphological but not aggressiveness‐related traits following a major resistance breakdown in the poplar rust fungus, Melampsora larici‐populina Agathe Maupetit , Bénédicte Fabre , Jérémy Pétrowski , Axelle Andrieux , Stéphane de Mita Evolutionary Applications, 2021, 14 (2), pp.513-523. ⟨10.1111/eva.13136⟩ Journal articles hal-03052529v1
	Impact of ploidy and pathogen life cycle on resistance durability Méline Saubin , Stéphane de Mita , Xujia Zhu , Bruno Sudret , Fabien Halkett Peer Community In Evolutionary Biology, 2021, ⟨10.24072/pcjournal.10⟩ Journal articles hal-03610230v1
	A dynamic game approach to uninvadable strategies for biotrophic pathogens Ivan Yegorov , Frédéric Grognard , Ludovic L. Mailleret , Fabien Halkett , Pierre Bernhard Dynamic Games and Applications, 2020, 10, pp.257-296. ⟨10.1007/s13235-019-00307-1⟩ Journal articles hal-02147836v1
	Defense Compounds Rather Than Nutrient Availability Shape Aggressiveness Trait Variation Along a Leaf Maturity Gradient in a Biotrophic Plant Pathogen Agathe Maupetit , Romain Larbat , Michaël Pernaci , Axelle Andrieux , Cécile Guinet Frontiers in Plant Science, 2018, 9, pp.1-13. ⟨10.3389/fpls.2018.01396⟩ Journal articles hal-01901489v1
	Émergence de maladies sur peupliers ou la course aux armements entre l’améliorateur et les maladies (Résumé) Pascal Frey , Katherine J. Hayden , Fabien Halkett Revue forestière française, 2018, 70 (6), pp.643-644. ⟨10.4267/2042/70315⟩ Journal articles hal-03447441v1
	Five years investigation of female and male genotypes in périgord black truffle (Tuber melanosporum Vittad.) revealed contrasted reproduction strategies Herminia de La Varga Pastor , François Le Tacon , Mélanie Lagoguet , Flora Todesco , Torda Varga Environmental Microbiology, 2017, 19 (7), pp.2604-2615. ⟨10.1111/1462-2920.13735⟩ Journal articles hal-01595244v1
	ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two-time steps Ronan Becheler , Jean-Pierre Masson , Sophie Arnaud-Haond , Fabien Halkett , Stéphanie Mariette Molecular Ecology Resources, 2017, 17 (6), pp.e251-e267. ⟨10.1111/1755-0998.12698⟩ Journal articles hal-01608371v1
	The escalatory Red Queen Antoine Persoons , Katherine Hayden , Bénédicte Fabre , Pascal Frey , Stéphane de Mita Molecular Ecology, 2017, 26 (7), pp.1902-1918. ⟨10.1111/mec.13980⟩ Journal articles hal-01564550v1
	Genetic Diversity and Origins of the Homoploid-Type Hybrid Phytophthora ×alni Jaime Aguayo , Fabien Halkett , Claude Husson , András Szigethy , József Bakonyi Applied and Environmental Microbiology, 2016, 82 (24), pp.7142-7153. ⟨10.1128/AEM.02221-16⟩ Journal articles hal-01494736v1
	Genetic signatures of a range expansion in natura: when clones play leapfrog Ronan Becheler , Constance Xhaard , Etienne K. Klein , Katherine J. Hayden , Pascal Frey Ecology and Evolution, 2016, 6 (18), pp.6625-6632. ⟨10.1002/ece3.2392⟩ Journal articles hal-01512000v1
	Relationship between the genetic characteristics of Botrytis sp. airborne inoculum and meteorological parameters, seasons and the origin of air masses Christel Leyronas , Fabien Halkett , Philippe C. Nicot Aerobiologia, 2015, 31 (3), pp.367-380. ⟨10.1007/s10453-015-9370-x⟩ Journal articles hal-01268891v1
	Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors Antoine Persoons , Emmanuelle Morin , Christine Delaruelle , Thibaut Payen , Fabien Halkett Frontiers in Plant Science, 2014, 5, ⟨10.3389/fpls.2014.00450⟩ Journal articles hal-01269012v1
	Dynamique de la reproduction sexuée. Claude Murat-Furminieux , Herminia de La Varga Pastor , Emila Akroume , François Le Tacon , Christophe Robin Le Trufficulteur Français, 2014, 87 (2), pp.14 Journal articles hal-01269190v1
	Genome-wide patterns of segregation and linkage disequilibrium: the construction of a linkage genetic map of the poplar rust fungus Melampsora larici-populina Michaël Pernaci , Stéphane de Mita , Axelle Andrieux , Jeremy Petrowski , Fabien Halkett Frontiers in Plant Science, 2014, 5, ⟨10.3389/fpls.2014.00454⟩ Journal articles hal-01269013v1
	Strong Genetic Differentiation Between North American and European Populations of Phytophthora alni subsp. uniformis. Jaime Aguayo-Silva , Gerard C. Adams , Fabien Halkett , Mursel Catal , Claude Husson Phytopathology, 2013, 103 (2), pp.190-199. ⟨10.1094/PHYTO-05-12-0116-R⟩ Journal articles hal-01136978v1
	Evidence of gene flow between sympatric populations of the Middle East-Asia Minor 1 and Mediterranean putative species of [i]Bemisia tabaci[/i] Abdessalem Tahiri , Fabien Halkett , Martine Granier , Gwenaelle Gueguen , Michel Peterschmitt Ecology and Evolution, 2013, 3 (8), pp.2619-2633. ⟨10.1002/ece3.655⟩ Journal articles hal-01268095v1
	Fine-scale spatial genetic structure of the black truffle (Tuber melanosporum) investigated with neutral microsatellites and functional mating type genes Claude Murat-Furminieux , Andrea Rubini , Claudia Riccioni , Herminia de La Varga Pastor , Emila Akroume New Phytologist, 2013, 199 (1), pp.176-187. ⟨10.1111/nph.12264⟩ Journal articles hal-01268448v1
	Exploring the role of asexual multiplication in poplar rust epidemics: impact on diversity and genetic structure Benoît Barres , Christian Cyril Dutech , Axelle Andrieux , Fabien Halkett , Pascal Frey Molecular Ecology, 2012, 21 (20), pp.4996-5008. ⟨10.1111/mec.12008⟩ Journal articles hal-02646739v1
	Disentangling the genetic origins of a plant pathogen during disease spread using an original molecular epidemiology approach Constance Xhaard , Benoît Barres , Axelle Andrieux , Lydia Bousset , Fabien Halkett Molecular Ecology, 2012, 21 (10), pp.2383-2398. ⟨10.1111/j.1365-294X.2012.05556.x⟩ Journal articles hal-01191214v1
	Variation in aggressiveness is detected among Puccinia triticina isolates of the same pathotype and clonal lineage in the adult plant stage Bénédicte Pariaud , Henriette Goyeau , Fabien Halkett , Corinne Robert , Christian Lannou European Journal of Plant Pathology, 2012, 134 (4), pp.733-743. ⟨10.1007/s10658-012-0049-7⟩ Journal articles hal-01000751v1
	Inferences on pathogenic fungus population structures from microsatellite data: new insights from spatial genetics approaches Adrien Rieux , Fabien Halkett , L. de Lapeyre de Bellaire , M-F. Zapater , F. Rousset Molecular Ecology, 2011, 20 (8), pp.1661 - 1674. ⟨10.1111/j.1365-294X.2011.05053.x⟩ Journal articles hal-02651924v1
	Predicting invasion success of forest pathogenic fungi from species traits Aurore A. Philibert , Marie Laure M. L. Desprez Loustau , Bénédicte Fabre , Pascal Frey , Fabien Halkett Journal of Applied Ecology, 2011, 48 (6), pp.1381 - 1390. ⟨10.1111/j.1365-2664.2011.02039.x⟩ Journal articles hal-01000012v1
	The genetic structure of the plant pathogenic fungus Melampsora larici-populina on its wild host is extensively impacted by host domestication Constance Xhaard , Bénédicte Fabre , Axelle Andrieux , P. Gladieux , Benoît Barres Molecular Ecology, 2011, 20 (13), pp.2739-2755. ⟨10.1111/j.1365-294X.2011.05138.x⟩ Journal articles hal-01136973v1
	Genetic discontinuities and disequilibria in recently established populations of the plant pathogenic fungus Mycosphaerella fijiensis Fabien Halkett , D. Coste , G.G. Rivas Platero , Marie-Françoise Zapater , Catherine Abadie Molecular Ecology, 2010, 19 (18), pp.3909-3923. ⟨10.1111/j.1365-294X.2010.04774.x⟩ Journal articles hal-02656829v1
	A statistical model to detect asymptomatic infectious individuals with an application in the Phytophthora alni-induced alder decline Chabi Fabrice Elegbede , J-Claude Pierrat , Jaime Aguayo-Silva , Claude Husson , Fabien Halkett Phytopathology, 2010, 100 (11), pp.1262-1269. ⟨10.1094/PHYTO-05-10-0140⟩ Journal articles hal-01195036v1
	Aggressiveness and its role in the adaptation of plant pathogens Benedicte B. Pariaud , V. Ravigné , Fabien Halkett , Henriette H. Goyeau , Jean Carlier Plant Pathology, 2009, 58 (3), pp.409-424. ⟨10.1111/j.1365-3059.2009.02039.x⟩ Journal articles hal-02668732v1
	Characterization of 41 microsatellite loci developed from the genome sequence of the poplar rust fungus, Melampsora larici-populina Constance Xhaard , Axelle Andrieux , Fabien Halkett , Pascal Frey Conservation Genetics Resources, 2009, 1 (1), pp.21-25. ⟨10.1007/s12686-009-9005-z⟩ Journal articles hal-02667477v1
	Genetic structure of the invasive pest Bemisia tabaci: evidence of limited but persistent genetic differentiation in glasshouse populations Anne Dalmon , Fabien Halkett , Martine Granier , Hélène Delatte , Michel Peterschmitt Heredity, 2008, 100 (4), pp.316-325. ⟨10.1038/sj.hdy.6801080⟩ Journal articles hal-02664416v1
	Genetic structure of the poplar rust fungus Melampsora larici-populina : Evidence for isolation by distance in Europe and recent founder effects overseas Benoît Barres , Fabien Halkett , Christian Cyril Dutech , Axelle Andrieux , Jean Pinon Infection, Genetics and Evolution, 2008, 8 (5), pp.577-587. ⟨10.1016/j.meegid.2008.04.005⟩ Journal articles hal-02669196v1
	Clonality and host selection in the wheat pathogenic fungus Puccinia triticina Henriette H. Goyeau , Fabien Halkett , Marie-Françoise Zapater , Jean Carlier , Christian C. Lannou Fungal Genetics and Biology, 2007, 44 (6), pp.474-483. ⟨10.1016/j.fgb.2007.02.006⟩ Journal articles hal-02666081v1
	Temporal differentiation and spatial coexistence of sexual and facultative asexual lineages of an aphid species at mating sites Fabien Halkett , P. Kindlmann , Manuel Plantegenest , P. Sunnucks , Jean-Christophe Simon Journal of Evolutionary Biology, 2006, 19 (3), pp.809-815. ⟨10.1111/j.1420-9101.2005.01055.x⟩ Journal articles hal-02663205v1
	Admixed sexual and facultatively asexual aphid lineages at mating sites Fabien Halkett , Manuel Plantegenest , Nathalie Prunier-Leterme , Lucie Mieuzet , François F. Delmotte Molecular Ecology, 2005, 14 (1), pp.325-336. ⟨10.1111/j.1365-294X.2004.02358.x⟩ Journal articles hal-02675684v1
	Tackling the population genetics of clonal and partially clonal organisms Fabien Halkett , Jean-Christophe Simon , F. Balloux Trends in Ecology & Evolution, 2005, 20 (4), pp.194-201. ⟨10.1016/j.tree.2005.01.001⟩ Journal articles hal-02682235v1
	Dynamics of Production of Sexual Forms in Aphids: Theoretical and Experimental Evidence for Adaptive “Coin‐Flipping” Plasticity Fabien Halkett , Richard Harrington , Maurice Hulle , Pavel Kindlmann , Frédéric Menu The American Naturalist, 2004, 163 (6), pp.E112-E125. ⟨10.1086/383618⟩ Journal articles hal-02683454v1

	Poplar rust dispersal along the Durance River valley: inference of dispersal kernel and consequences Frédéric Fabre , Méline Saubin , Jérôme Coville , Constance Xhaard , Pascal Frey Workshop on Evolutionary Dynamical Systems and Applications (EDySA) and Training on Mathematics and Modeling, Nov 2023, Thiès, Senegal Conference papers hal-04428063v1
	The Durance River valley: a great ecological system to study dispersal Fabien Halkett , Méline Saubin , Xhaard Constance , Becheler Ronan , Stoeckel Solenn Journée thématique du LabEx ARBRE "Maladies forestières et changements globaux", Mireia Gomez-Gallego, Jun 2023, Champenoux, France, France Conference papers hal-04125869v1
	Genetic signatures of a range expansion in natura: how clones play leapfrog? Méline Saubin , Ronan Becheler , Jérôme Coville , Lucie Develay , Bénédicte Fabre Congress of the European Society for Evolutionary Biology, Lukáš Kratochvíl, Aug 2022, Prague, Czech Republic Conference papers hal-04137682v1
	Temporal genetic signatures of rapid demographic changes caused by directional selection, the case of a pathogen population overcoming plant resistance Méline Saubin , Solenn Stoeckel , Aurélien Tellier , Fabien Halkett Petit Pois Déridé 2022; 40ème réunion du Groupe d'Étude de Biologie et Génétique des Populations, May 2022, Lille, France Conference papers hal-04137858v1
	Demographic and genomic consequences of a rapid adaptation event in the poplar rust pathogen Méline Saubin , Clémentine Louet , Solenn Stoeckel , Fabien Halkett , Aurélien Tellier Congress of the European Society for Evolutionary Biology, Lukáš Kratochvíl, Aug 2022, Prague, Czech Republic Conference papers hal-04137689v1
	Demographic and genetic consequences of a rapid adaptation event in the poplar rust pathogen Méline Saubin , Solenn Stoeckel , Aurélien Tellier , Fabien Halkett 2ème Réunion du Réseau E3GP3, Nov 2022, Paris, France Conference papers hal-04137651v1
	Temporal genetic signatures of rapid demographic changes caused by directional selection, the case of a pathogen population overcoming plant resistance Méline Saubin , Solenn Stoeckel , Aurélien Tellier , Fabien Halkett Séminaire MEE (Modélisation en écologie et évolution), May 2022, Montpellier, France Conference papers hal-04137877v1
	White and grey molds, where do you come from? A comparative study on inoculum of B. cinerea and S. sclerotiorum Christel Leyronas , Fabien Halkett , Cindy E. Morris , Maria Choufany , Samuel Soubeyrand 18. International Botrytis Symposium & 17. International Sclerotinia Workshop, Unité de pathologie végétale, Avignon, INRAE; Unité de recherche Plantes et systèmes de culture horticoles, INRAE; Unité Biologie gestion des risques en agriculture, INRAE; Avignon université, Jun 2022, Avignon, France Conference papers hal-03695253v1
	Les populations d'agents pathogènes, une cible mouvante et qui s'adapte rapidement Fabien Halkett Colloque « Concevoir et utiliser des variétés résistantes pour une agriculture plus durable », Oct 2022, Paris, France Conference papers hal-04138053v1
	Une mutation ponctuelle et une large délétion au locus candidat d’avirulence AvrMlp7 chez la rouille du peuplier sont corrélés avec le contournement de la résistance RMlp7 exprimée par le peuplier Clémentine Louet , Méline Saubin , Axelle Andrieux , Antoine Persoons , Mathilde Gorse Journées Jean Chevaugeon, 13èmes Rencontres de Phytopathologie - Mycologie, Sep 2022, Aussois, France Conference papers hal-04137634v1
	Effect of ploidy and life cycle on plant resistance durability Méline Saubin , Clémentine Louet , Fabien Halkett 1ère Réunion du Réseau E3GP3, Dec 2021, Paris (online), France Conference papers hal-04137504v1
	Association of two co-occurring mutations at the AvrMlp7 avirulence locus in poplar rust during the breakdown of RMlp7 resistance gene Louet C , Méline Saubin , Axelle Andrieux , A. Persoons , Gorce M Molecular Mechanism & Structure— Zooming in on Plant Immunity, Jul 2021, e-symposia, Germany Conference papers hal-03588311v1
	From population genomics to molecular approaches to identify and analyse the first avirulence gene in the poplar rust fungus Melampsora larici-populina Clémentine Louet , Méline Saubin , Antoine Persoons , Axelle Andrieux , Bénédicte Fabre Réunion 2020 du groupe "champignons phytopathogènes", Nov 2020, aucune (visio), France Conference papers hal-03336539v1
	Impact of the light on poplar rust infection Bénédicte Fabre , Fabien Halkett , Pascal Frey Workshop PathoLED: light sources & plant pathology test outcomes, May 2019, Angers (FR), France Conference papers hal-04137334v1
	Towards evolutionary and functional characterization of an avirulence gene in the poplar rust fungus Pascal Frey , Clémentine Louet , Agathe Maupetit , Méline Saubin , Antoine Persoons IUFRO Joint Conference: Genetics of Five-Needle Pines & Rusts of Forest Trees, Jul 2019, Invermere, United States Conference papers hal-04137412v1
	Towards evolutionary and functional characterization of an avirulence gene in the poplar rust fungus Pascal Frey , Clémentine Louet , Agathe Maupetit , Méline Saubin , Fabien Halkett 3rd Wild Plant Pathosystems Conference, Marco Thines, Sep 2019, Frankfurt,, Germany Conference papers hal-04137365v1
	Optimal infection dynamics in spore producing pathogens: reconciling theory with experiment for the study of host-parasite interactions Fabien Halkett , Ivan Yegorov , Frédéric Fabre , Virginie Ravigné , Pascal Frey 3rd Wild Plant Pathosystems Conference, Sep 2019, Frankfurt, Germany Conference papers hal-03336458v1
	From mutation to population extinction: The butterfly effect of resistance breakdown in the poplar rust fungus Melampsora larici- populina Antoine Persoons , Fabien Halkett , Sébastien Duplessis , Pascal Frey , Stéphane de Mita XVIII International Congress on Molecular Plant-Microbe Interactions (IS-MPMI), Jul 2019, Glasgow, United Kingdom. pp.S1.1-S1.243 Conference papers hal-04137226v1
	First avirulence gene in the poplar rust fungus Melampsora larici-populina, from genetic characterization to functional validation Clémentine Louet , Méline Saubin , Antoine Persoons , Agathe Maupetit , Stéphane de Mita 12th Effectome Meeting, Oct 2019, Lauret, France Conference papers hal-04137237v1
	Uninvadable strategies for biotrophic pathogens, from dynamic games to adaptive dynamics Frédéric Grognard , Ivan Yegorov , Julien Guegan , Ludovic Mailleret , Fabien Halkett 11th European Conference on Mathematical and Theoretical Biology (ECMTB), Jul 2018, Lisbon, Portugal Conference papers hal-01940820v1
	Evolutionary potential of aggressiveness related traits in the poplar rust fungus, Melampsora larici-populina Agathe Maupetit , Katherine Hayden , Pascal Frey , Stéphane de Mita , Fabien Halkett 12. Rencontres de Phytopathologie - Mycologie - JJC 2018 Journée Jean Chevaugeon, Jan 2018, Aussois, France Conference papers hal-03336266v1
	Evolutionary potential of aggressiveness traits in the poplar rust fungus, Melampsora larici-populina Agathe Maupetit , Antoine Persoons , Katherine Hayden , Vincent Segura , Thomas Coudoux II Joint Congress on Evolutionary Biology, Aug 2018, Montpellier, France Conference papers hal-04137309v1
	Emergence de maladies sur peupliers ou la course aux armements entre l’améliorateur et les maladies Pascal Frey , Katherine Hayden , Fabien Halkett Regefor Atelier Recherche et Gestion Forestières. Emergence de bioagresseurs en forêt : Comment identifier et atténuer les risques ?, Jun 2017, Champenoux, France Conference papers hal-02791243v1
	When a plant pathogen runs down a river Pascal Frey , Constance Xhaard , Michaël Pernaci , Ronan Becheler , Katherine Hayden 12. European Foundation for Plant Pathology (EFPP) ; 10. French Society for Plant Pathology (SFP) Conference, May 2017, Dunkerque Malo-les-Bains, France Conference papers hal-02788429v1
	Genome-wide QTL mapping of aggressiveness traits in the poplar rust fungus Michaël Pernaci , Agathe Maupetit , Stéphane de Mita , Bénédicte Fabre , Sébastien Duplessis International Conference on Population Genomics of Fungal and Oomycete Diseases of Animals and Plants, May 2017, Monte Verità Conference Center, Ascona, Switzerland Conference papers hal-02785090v1
	Demographic and genomic consequences of a major selective event in the poplar rust Fabien Halkett , Antoine Persoons , Agathe Maupetit , Sébastien Duplessis , Pascal Frey International Conference on Population Genomics of Fungal and Oomycete Diseases of Animals and Plants, May 2017, Ascona, Switzerland Conference papers hal-02790211v1
	Conséquences génomiques de l’adaptation à l’hôte chez l’agent de la rouille du peuplier Agathe Maupetit , Antoine Persoons , Vincent Segura , Thomas Coudoux , Pascal Frey 38. colloque Le Petit Pois Déridé, réunion du Groupe de Génétique et Biologie des Populations, Jun 2017, Saclay, France. 1 p Conference papers hal-02788070v1
	Optimal resource allocation for biotrophic plant pathogens Ivan Yegorov , Frédéric Grognard , Ludovic Mailleret , Fabien Halkett IFAC 2017 - 20th World Congress of the International Federation of Automatic Control, International Federation of Automatic Control (IFAC). AUT., Jul 2017, Toulouse, France. pp.1-6, ⟨10.1016/j.ifacol.2017.08.328⟩ Conference papers hal-01572090v1
	Adaptation of poplar rust to the poplar varietal landscape Katherine Hayden , Bénédicte Fabre , Fabien Halkett , Pascal Frey 11. Rencontres de Phytopathologie - Mycologie - JJC 2016 Journée Jean Chevaugeon, Jan 2016, Aussois, France Conference papers hal-01604529v1
	Update on Melampsora larici-populina genomics Sébastien Duplessis , Stéphane de Mita , Fabien Halkett , Pascal Frey 11. Rencontres de Phytopathologie - Mycologie - JJC 2016 Journée Jean Chevaugeon, Jan 2016, Aussois, France Conference papers hal-02741208v1
	Exemple de « vieilles » lignées asexuées chez les rouilles Ronan Becheler , Henriette Goyeau , Solenn Stoeckel , Fabien Halkett Réunion 2016 du groupe "champignons phytopathogènes", Nov 2016, Paris, France Conference papers hal-02795478v1
	Mapping QTL of aggressiveness traits in the poplar rust fungus Michaël Pernaci , Stéphane de Mita , Bénédicte Fabre , Sébastien Duplessis , Fabien Halkett 9eme Colloque de la Société Française de Phytopathologie, Jun 2015, Colmar, France Conference papers hal-02792933v1
	Quantitative trait evolution within a qualitative resistance breakdown Katherine Hayden , Bénédicte Fabre , Jeremy Petrowski , Fabien Halkett , Pascal Frey 5. International Conference on Genetics of Tree-Parasite Interactions: Novel challenges and opportunities for resistance to pests and pathogens, Aug 2015, Orléans, France Conference papers hal-02794919v1
	Identification of candidate effectors in the poplar rust fungus Melampsora larici-populina through a population genomics approach Antoine Persoons , Fabien Halkett , Stéphane de Mita , Sébastien Duplessis 28. Fungal Genetics Conference, Mar 2015, Asilomar, Pacific Grove, CA, United States Conference papers hal-02792660v1
	Mapping QTL of aggressiveness traits in the poplar rust fungus Michaël Pernaci , Stéphane de Mita , Bénédicte Fabre , Sébastien Duplessis , Fabien Halkett 5. International Conference on Genetics of Tree-Parasite Interactions : Novel challenges and opportunities for resistance to pests and pathogens, Aug 2015, Orléans, France Conference papers hal-02793206v1
	On the road to mapping QTLs of morphological and aggressiveness traits in the poplar rust fungus Michaël Pernaci , Stéphane de Mita , Bénédicte Fabre , Sébastien Duplessis , Fabien Halkett Réunion annuelle 2015 du Réseau Ecologie des Interactions Durables, Mar 2015, Lyon, France Conference papers hal-02792666v1
	Identification d’effecteurs de Melampsora larici-populina par une approche originale : de la génomique des populations à la génomique fonctionnelle Antoine Persoons , Stéphane de Mita , Fabien Halkett , Sébastien Duplessis 10. Rencontres de Phytopathologie - Mycologie - JJC 2014 Journée Jean Chevaugeon, Jan 2014, Aussois, France. 116 p Conference papers hal-02742734v1
	On the road to mapping QTLs of morphological and aggressiveness traits in the poplar rust fungus Michaël Pernaci , Stéphane de Mita , Bénédicte Fabre , Axelle Andrieux , Fabien Halkett IUFRO Joint Meeting on Genetics of Five-Needle Pines and Rusts in Mountain Landscapes, Jun 2014, Fort Collins, United States Conference papers hal-02792679v1
	Étude du déterminisme génétique des traits de vie qualitatifs et quantitatifs de Melampsora larici-populina, agent de la rouille foliaire du peuplier Michaël Pernaci , Stéphane de Mita , Bénédicte Fabre , Axelle Andrieux , Fabien Halkett 10. Rencontres de Phytopathologie - Mycologie - JJC 2014 Journée Jean Chevaugeon, Jan 2014, Aussois, France Conference papers hal-02800971v1
	Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors Antoine Persoons , Emmanuelle Morin , Christine Delaruelle , Thibaut Payen , Fabien Halkett Max-Planck-ARBRE inter-departmental workshop on plant-fungus interactions, Nov 2014, Nancy, France Conference papers hal-02794927v1
	Pathogen adaptation to a shifting host landscape Katherine Hayden , Bénédicte Fabre , Jeremy Petrowski , Fabien Halkett , Pascal Frey Max-Planck-ARBRE inter-departmental workshop on plant-fungus interactions, Max Planck Institute for Terrestrial Microbiology. DEU., Nov 2014, Nancy, France Conference papers hal-02800432v1
	Adaptation de la rouille du peuplier au paysage variétal populicole en France Katherine Hayden , Constance Xhaard , Bénédicte Fabre , Fabien Halkett , Pascal Frey 14. Rencontres du Groupe Français de Pathologie Forestière, Oct 2014, Hendaye, France Conference papers hal-01606751v1
	Adaptation of poplar rust to the poplar varietal landscape Katherine Hayden , Constance Xhaard , Bénédicte Fabre , Fabien Halkett , Pascal Frey IUFRO Joint Meeting on Genetics of Five-Needle Pines and Rusts in Mountain Landscapes, Jun 2014, Fort Collins, United States Conference papers hal-02792367v1
	Genomics, transcriptomics and effectoromics of the poplar leaf rust fungus Melampsora larici-populina Benjamin Petre , Stéphane S. Hacquard , Antoine Persoons , Emilie Tisserant , Emmanuelle Morin IUFRO Joint Meeting on Genetics of Five-Needle Pines and Rusts in Mountain Landscapes, Jun 2014, Fort Collins, United States Conference papers hal-02801804v1
	Origine de l'inoculum aérien de [i]Botrytis cinerea[/i] : sources locales vs introduction à partir de sources éloignées ? Christel Leyronas , Samuel Soubeyrand , Olivier Martin , Fabien Halkett , Philippe C. Nicot Journée sur la biologie des populations introduites, Nov 2013, Sophia-Antipolis, France Conference papers hal-01268386v1
	Inférence des processus épidémiques chez la rouille du peuplier dans la vallée de la Durance Constance Xhaard , Frédéric Fabre , Jérôme Coville , Pascal Frey , Samuel Soubeyrand 34. Réunion annuelle du Groupe d’Etude de Biologie et Génétique des Populations (Petit Pois Déridé 2012), Aug 2012, Avignon, France Conference papers hal-01267867v1
	Modélisation spatio-temporelle du déroulement d’une épidémie de rouille du peuplier dans la vallée de la Durance Constance Xhaard , Frédéric Fabre , Jérôme Coville , Fabien Halkett , Samuel Soubeyrand 7. Rencontres Statistiques au Sommet de Rochebrune, Apr 2012, Megève, France Conference papers hal-01267965v1
	Un cadre théorique pour étudier les interactions plantes - champignons pathogènes foliaires Fabien Halkett , Audrey Andanson , Bénédicte Fabre , Elisabeth E. Fournier , Pascal Frey 8. Congrès national de la Société Française de Phytopathologie, Jun 2012, Paris, France. p.54 Conference papers hal-02802411v1
	Predicting invasion success in forest pathogenic fungi from species traits? Marie Laure Desprez Loustau , Pascal Frey , Fabien Halkett , Claude Husson , Brigitte Lung Conference Jacques Monod on ‘New and Emerging Fungal Diseases of Animals and Plants”, Jun 2011, Roscoff, France Conference papers hal-01173287v1
	Un cadre théorique pour étudier les interactions plantes - champignons pathogènes foliaires Audrey Andanson , Elisabeth E. Fournier , F. Grognard , Fabien Halkett , Ludovic Mailleret 8. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2010, Aussois, France Conference papers hal-02756003v1
	Un cadre théorique pour étudier les interactions plantes-champignons pathogènes foliaires Virginie Ravigné , Audrey Andanson , Bénédicte Fabre , Pascal Frey , Elisabeth Fournier Premier Colloque National d'Ecologie Scientifique, 2010, Montpellier, France Conference papers hal-00853204v1
	Que nous raconte l'analyse des structures génétiques sur la dispersion des champignons phytopathogènes ? Cyril Dutech , Virginie Ravigné , Fabien Halkett , Elisabeth Fournier , Jean Carlier 7. Rencontres de Phytopathologie - Mycologie de la Société Française de Phytopathologie. Journées Jean Chevaugeon, Jan 2008, Aussois, France. 14 diapositives Conference papers hal-02816891v1

	Poplar rust never sleeps: evolutionary characterization of the first avirulence gene in the poplar rust fungus Melampsora larici-populina Clémentine Louet , Méline Saubin , Sébastien Duplessis , Fabien Halkett , Pascal Frey 12th International Congress of Plant Pathology, Aug 2023, Lyon, France. 2023 Conference poster hal-04230809v1
	Evolutionary and functional studies of the variability of reproductive modes in the poplar rust fungus, Melampsora larici-populina Ammar Abdalrahem , Pascal Frey , Fabien Halkett , Sébastien Duplessis CJM3-2023 : Le sexe dans tous ses états : sexe, asexe, sexes, Sep 2023, Roscoff, France Conference poster hal-04233782v1
	Impact of ploidy and pathogen life cycle on resistance durability Méline Saubin , Stéphane de Mita , Fabien Halkett 18th Ecology and Evolution of Infectious Diseases, Jun 2021, (Online), France Conference poster hal-03336582v1
	Evolutionary dynamics of virulence spread: effects of life cycle, genetic determinism and host resistance deployment Méline Saubin , Clémentine Louet , Stéphane de Mita , Antoine Persoons , Axelle Andrieux Sex and Asex: The Genetics of Complex Life-Cycles, Jun 2019, Portland (Oregon), United States Conference poster hal-03336443v1
	ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two time steps Ronan Becheler , Jean-Pierre Masson , Sophie Arnaud-Haond , Fabien Halkett , Stéphanie Mariette Jacques Monod conference "Sex uncovered: the evolutionary biology of reproductive systems", Apr 2018, Roscoff, France Conference poster hal-03336667v1
	Genetic architecture of pathogenicity-associated traits in the poplar rust fungus, Melampsora larici-populina Agathe Maupetit , Katherine Hayden , Vincent Segura , Romain Larbat , Stéphane de Mita Evolution 2018 Montpellier, Aug 2018, Montpellier, France Conference poster hal-03336361v1
	Genetic architecture of pathogenicity-related life history traits in the poplar rust fungus Agathe Maupetit , Michaël Pernaci , Bénédicte Fabre , Sébastien Duplessis , Stéphane de Mita 11. Rencontres de Phytopathologie - Mycologie - JJC 2016 Journée Jean Chevaugeon, Jan 2016, Aussois, France. , 96 p., 2016, 11èmes Journées Jean Chevaugeon. 25–29 janvier 2016. Centre Paul Langevin, Aussois (France) Conference poster hal-02740999v1
	Update on Melampsora larici-populina genomics Sébastien Duplessis , Stéphane de Mita , Fabien Halkett , Pascal Frey 13th European Conference on Fungal Genertics (ECFG13), Apr 2016, Paris, France Conference poster hal-03253579v1
	Caractérisation de l'inoculum aérien de[i] Botrytis cinerea[/i] pour la prévision des épidémies de pourriture grise Christel Leyronas , Philippe C. Nicot , Fabien Halkett , Olivier Martin , Samuel Soubeyrand 9. colloque de la Société Française de Phytopathologie, Jun 2015, Colmar, France. , 2015, 9. Colloque de la société française de phytopathologie. Livre des résumés. Du 2 au 5 juin 2015, Colmar, "la cité de Bartholdi" Conference poster hal-01269044v1
	Adaptation of poplar rust to the poplar varietal landscape Katherine Hayden , Bénédicte Fabre , Fabien Halkett , Pascal Frey 10. Rencontres de Phytopathologie - Mycologie. Journées Jean Chevaugeon, Jan 2014, Aussois, France. 2014, Journées Jean Chevaugeon 2014. 10es Rencontres de phytopathologie-mycologie de la Société Française de Phytopahologie (SFP). 27 au 31 janvier 2014. Centre Paul Langevin, CAES du CNRS Aussois (Savoie) – France Conference poster hal-02739666v1
	Structure génétique spatiale de la truffe noire du Périgord (Tuber melanosporum) dans une plantation productive analysée par marqueurs microsatellites et les gènes de compatibilité sexuelle Claude Murat , Herminia de La Varga , Emila Akroume , François Le Tacon , Christophe Robin 10. Rencontres de Phytopathologie - Mycologie. Journées Jean Chevaugeon, Jan 2014, Aussois, France. 2014, Journées Jean Chevaugeon 2014. 10es Rencontres de phytopathologie-mycologie de la Société Française de Phytopahologie (SFP). 27 au 31 janvier 2014. Centre Paul Langevin, CAES du CNRS Aussois (Savoie) – France Conference poster hal-02743213v1
	Evolution temporelle des caractéristiques génétiques de l’inoculum aérien de Botrytis cinerea un champignon pathogène extrêmement polyphage Christel Leyronas , Philippe C. Nicot , Fabien Halkett 34. Réunion annuelle du Groupe d’Etude de Biologie et Génétique des Populations (Petit Pois Déridé 2012), Aug 2012, Avignon, France. 2012, Petit Pois Déridé 2012. Avignon, du 28 au 31 août 2012. Actes du colloque. Session 7 «Dispersion, épidémiologie et biologie des invasions» Conference poster hal-01267798v1
	Évolution des populations aériennes de [i]Botrytis cinerea[/i] : un exemple d’aéromicrobiologie Christel Leyronas , Fabien Halkett , Magali Duffaud , Philippe C. Nicot Journées des Microbiologistes de l’INRA 2012, Nov 2012, L'Isle-sur-la-Sorgue, France. 2012, Journées des Microbiologistes de l'Inra 2012. L'Isle-sur-La-Sorgue- 13-15 novembre 2012 Conference poster hal-01267866v1

	Coévolution plantes-parasites en populations naturelles Virginie Ravigné , Fabien Halkett , Charlotte Tollenaere L'immunité des plantes. Pour des cultures résistantes aux maladies, Editions Quae, pp.115-123, 2021, 9782759232338 Book sections hal-04141298v1
	Un effet papillon dans les peupleraies françaises : les répercussions d’un contournement de résistance sur les méthodes de sélection variétale Bénédicte Fabre , Catherine Bastien , Claude Husson , Benoit Marçais , Pascal Frey L'immunité des plantes. Pour des cultures résistantes aux maladies, Editions Quae, pp.329-339, 2021, 9782759232338 Book sections hal-03324138v1
	L'adaptation des agents pathogènes de plantes aux systèmes cultivés : une évolution sous contraintes anthropiques Fabien Halkett , Christian Lannou , Christophe Le May , Josselin Montarry , Julien Papaïx L'immunité des plantes. Pour des cultures résistantes aux maladies, Editions Quae, pp.125-134, 2021, 9782759232338 Book sections hal-03316033v1
	Les contournements de résistance : Mécanismes, dynamiques et conséquences Henriette Goyeau , Fabien Halkett , Bruno Le Cam , Josselin Montarry , Christophe Le May L'immunité des plantes. Pour des cultures résistantes aux maladies, Editions Quae, pp.135-145, 2021, 9782759232338 Book sections hal-03316038v1

	ClonEstiMate 1.01 Ronan Becheler , Jean-Pierre Masson , Sophie Arnaud-Haond , Fabien Halkett , Stéphanie Mariette 2016 Other publications hal-01608300v1

	INTERPOPGER Interactions entre peupleraies naturelles et cultivées et pressions évolutives liées à leurs modes de gestion. Bilan scientifique 2005‐2008 Catherine Bastien , Jose-Luis Almeida Falcon , Nicolas Chenault , Arnaud A. Dowkiw , Vanina Guérin 2008 Reports hal-02824228v1

	Evolution et Adaptation des agents pathogènes Fabien Halkett , Jacominus van Baalen , Manuel Plantegenest Master Biologie et écologie pour la Forêt, l’Agronomie et la Gestion des Ecosystèmes (FAGE) : UE8.16 (Evolution et Adaptation des agents pathogènes), 2017, 79 p Lectures hal-02788489v1
	Introduction à la génétique et à la génomique des populations Fabien Halkett , Stéphane de Mita Master FAGE UE8.16 (Introduction à la génétique des populations), 2017, 68 p Lectures hal-02789805v1

Fabien HALKETT

Publications

A mechanistic-statistical approach to infer dispersal and demography from invasion dynamics, applied to a plant pathogen

Approximate Bayesian Computation applied to time series of population genetic data disentangles rapid genetic changes and demographic variations in a pathogen population

Improving sustainable crop protection using population genetics concepts

A point mutation and large deletion at the candidate avirulence locus AvrMlp7 in the poplar rust fungus correlate with poplar RMlp7 resistance breakdown

Airborne versus soilborne inoculum: White mould, where do you come from?

Genomic Signatures of a Major Adaptive Event in the Pathogenic Fungus Melampsora larici-populina

Evolution of morphological but not aggressiveness‐related traits following a major resistance breakdown in the poplar rust fungus, Melampsora larici‐populina

Impact of ploidy and pathogen life cycle on resistance durability

A dynamic game approach to uninvadable strategies for biotrophic pathogens

Defense Compounds Rather Than Nutrient Availability Shape Aggressiveness Trait Variation Along a Leaf Maturity Gradient in a Biotrophic Plant Pathogen

Émergence de maladies sur peupliers ou la course aux armements entre l’améliorateur et les maladies (Résumé)

Five years investigation of female and male genotypes in périgord black truffle (Tuber melanosporum Vittad.) revealed contrasted reproduction strategies

ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two-time steps

The escalatory Red Queen

Genetic Diversity and Origins of the Homoploid-Type Hybrid Phytophthora ×alni

Genetic signatures of a range expansion in natura: when clones play leapfrog

Relationship between the genetic characteristics of Botrytis sp. airborne inoculum and meteorological parameters, seasons and the origin of air masses

Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors

Dynamique de la reproduction sexuée.

Genome-wide patterns of segregation and linkage disequilibrium: the construction of a linkage genetic map of the poplar rust fungus Melampsora larici-populina

Strong Genetic Differentiation Between North American and European Populations of Phytophthora alni subsp. uniformis.

Evidence of gene flow between sympatric populations of the Middle East-Asia Minor 1 and Mediterranean putative species of [i]Bemisia tabaci[/i]

Fine-scale spatial genetic structure of the black truffle (Tuber melanosporum) investigated with neutral microsatellites and functional mating type genes

Exploring the role of asexual multiplication in poplar rust epidemics: impact on diversity and genetic structure

Disentangling the genetic origins of a plant pathogen during disease spread using an original molecular epidemiology approach

Variation in aggressiveness is detected among Puccinia triticina isolates of the same pathotype and clonal lineage in the adult plant stage

Inferences on pathogenic fungus population structures from microsatellite data: new insights from spatial genetics approaches

Predicting invasion success of forest pathogenic fungi from species traits

The genetic structure of the plant pathogenic fungus Melampsora larici-populina on its wild host is extensively impacted by host domestication

Genetic discontinuities and disequilibria in recently established populations of the plant pathogenic fungus Mycosphaerella fijiensis

A statistical model to detect asymptomatic infectious individuals with an application in the Phytophthora alni-induced alder decline

Aggressiveness and its role in the adaptation of plant pathogens

Characterization of 41 microsatellite loci developed from the genome sequence of the poplar rust fungus, Melampsora larici-populina

Genetic structure of the invasive pest Bemisia tabaci: evidence of limited but persistent genetic differentiation in glasshouse populations

Genetic structure of the poplar rust fungus Melampsora larici-populina : Evidence for isolation by distance in Europe and recent founder effects overseas

Clonality and host selection in the wheat pathogenic fungus Puccinia triticina

Temporal differentiation and spatial coexistence of sexual and facultative asexual lineages of an aphid species at mating sites

Admixed sexual and facultatively asexual aphid lineages at mating sites

Tackling the population genetics of clonal and partially clonal organisms

Dynamics of Production of Sexual Forms in Aphids: Theoretical and Experimental Evidence for Adaptive “Coin‐Flipping” Plasticity

Poplar rust dispersal along the Durance River valley: inference of dispersal kernel and consequences

The Durance River valley: a great ecological system to study dispersal

Genetic signatures of a range expansion in natura: how clones play leapfrog?

Temporal genetic signatures of rapid demographic changes caused by directional selection, the case of a pathogen population overcoming plant resistance

Demographic and genomic consequences of a rapid adaptation event in the poplar rust pathogen

Demographic and genetic consequences of a rapid adaptation event in the poplar rust pathogen

Temporal genetic signatures of rapid demographic changes caused by directional selection, the case of a pathogen population overcoming plant resistance

White and grey molds, where do you come from? A comparative study on inoculum of B. cinerea and S. sclerotiorum

Les populations d'agents pathogènes, une cible mouvante et qui s'adapte rapidement

Une mutation ponctuelle et une large délétion au locus candidat d’avirulence AvrMlp7 chez la rouille du peuplier sont corrélés avec le contournement de la résistance RMlp7 exprimée par le peuplier

Effect of ploidy and life cycle on plant resistance durability

Association of two co-occurring mutations at the AvrMlp7 avirulence locus in poplar rust during the breakdown of RMlp7 resistance gene

From population genomics to molecular approaches to identify and analyse the first avirulence gene in the poplar rust fungus Melampsora larici-populina

Impact of the light on poplar rust infection

Towards evolutionary and functional characterization of an avirulence gene in the poplar rust fungus

Towards evolutionary and functional characterization of an avirulence gene in the poplar rust fungus

Optimal infection dynamics in spore producing pathogens: reconciling theory with experiment for the study of host-parasite interactions

From mutation to population extinction: The butterfly effect of resistance breakdown in the poplar rust fungus Melampsora larici- populina

First avirulence gene in the poplar rust fungus Melampsora larici-populina, from genetic characterization to functional validation

Uninvadable strategies for biotrophic pathogens, from dynamic games to adaptive dynamics

Evolutionary potential of aggressiveness related traits in the poplar rust fungus, Melampsora larici-populina

Evolutionary potential of aggressiveness traits in the poplar rust fungus, Melampsora larici-populina

Emergence de maladies sur peupliers ou la course aux armements entre l’améliorateur et les maladies

When a plant pathogen runs down a river

Genome-wide QTL mapping of aggressiveness traits in the poplar rust fungus

Demographic and genomic consequences of a major selective event in the poplar rust

Conséquences génomiques de l’adaptation à l’hôte chez l’agent de la rouille du peuplier

Optimal resource allocation for biotrophic plant pathogens

Adaptation of poplar rust to the poplar varietal landscape

Update on Melampsora larici-populina genomics

Exemple de « vieilles » lignées asexuées chez les rouilles

Mapping QTL of aggressiveness traits in the poplar rust fungus

Quantitative trait evolution within a qualitative resistance breakdown

Identification of candidate effectors in the poplar rust fungus Melampsora larici-populina through a population genomics approach

Mapping QTL of aggressiveness traits in the poplar rust fungus

On the road to mapping QTLs of morphological and aggressiveness traits in the poplar rust fungus

Identification d’effecteurs de Melampsora larici-populina par une approche originale : de la génomique des populations à la génomique fonctionnelle

On the road to mapping QTLs of morphological and aggressiveness traits in the poplar rust fungus