Fabrice Legeai Bioinformatics Project manager at IGEPP (INRAE)

Identifiants chercheurs

IdHAL :

fabrice-legeai

ORCID :

0000-0002-6472-4839

IdRef :

273916432

Présentation

Research Engineer and Project Manager in bioinformatics

Research interests :❖ Genomics of insect crop pests and their interactions with plants❖ Integration of omics data with Semantic Web technologies

Tools:❖ Askomics: Integration and data extraction with Semantic Web tools❖ AskoR: R library for RNA-Seq data analysis❖ MTG-Link: Gap-filling with linked-reads data❖ LRez: library for manipulation of linked-reads data❖ Leviathan: Identification of structural variants with linked-reads data❖ MinYS: reconstruction of symbiont genomes❖ FEELnc: Prediction of long non-coding RNAs

Publications

Article dans une revue (106)

Contrasting glucosinolate profiles in rapeseed genotypes shape the rhizosphere-insect continuum and microbial detoxification potential in a root herbivore Juliette M. Carpentier,Stéphane Derocles,Sylvain Chéreau,Bruno Marquer,Juliette Linglinet al. mSystems, 2025, 10 (12), pp.e01269-25. ⟨10.1128/msystems.01269-25⟩ Article dans une revue hal-05391655v1
Chromosome level assembly of five Brassica rapa and oleracea accessions expand the resistance genes reservoir Cyril Falentin,William J.W. Thomas,Matéo Boudet,Pauline Le Boulch,Alexis Bourdaiset al. Scientific Data , 2025, 12 (1), pp.2016. ⟨10.1038/s41597-025-06261-5⟩ Article dans une revue hal-05421264v1
Towards identification of a holocentromere marker in the lepidopteran model &lt;i&gt;Spodoptera frugiperda&lt;/i&gt; Sylvie Gimenez,Magali Eychenne,Fabrice Legeai,Sally Gamble,Emmanuelle d'Alençon Chromosoma Biology of the Nucleus, 2025, 134 (1), pp.2. ⟨10.1007/s00412-025-00828-2⟩ Article dans une revue hal-05039973v1
Comprehensive annotation of olfactory and gustatory receptor genes and transposable elements revealed their evolutionary dynamics in aphids Sergio Gabriel Olvera-Vazquez,Xilong Chen,Aurélie Mesnil,Camille Meslin,Fabricio Almeida-Silvaet al. Molecular Biology and Evolution, 2025, 42 (12), pp.msaf238. ⟨10.1093/molbev/msaf238⟩ Article dans une revue anses-05299488v1
Life Cycle Simplifications in Aphids Drive Changes in Evolutionary Rates and Selection Regimes Théo Vericel,Gaorui Gong,Fabrice Legeai,Aurelie Etier,Julie Jaquiéryet al. Molecular Biology and Evolution, 2025, 42 (12), pp.msaf307. ⟨10.1093/molbev/msaf307⟩ Article dans une revue hal-05421198v1
Transposable element accumulation drives genome size increase in Hylesia metabus (Lepidoptera: Saturniidae), an urticating moth species from South America Charles Perrier,Rémi Allio,Fabrice Legeai,Mathieu Gautier,Frédéric Bénéluzet al. Journal of Heredity, 2025, 116 (3), pp.344-353. ⟨10.1093/jhered/esae069⟩ Article dans une revue hal-04792049v3
Chromosome-Level Assembly and Annotation of the Pearly Heath Coenonympha arcania Butterfly Genome Fabrice Legeai,Sandra Romain,Thibaut Capblancq,Paul Doniol-Valcroze,Mathieu Joronet al. Genome Biology and Evolution, 2024, 16 (3), pp.evae055. ⟨10.1093/gbe/evae055⟩ Article dans une revue hal-04530573v1
Identification of a viral gene essential for the genome replication of a domesticated endogenous virus in ichneumonid parasitoid wasps Ange Lorenzi,Fabrice Legeai,Véronique Jouan,Pierre-Alain Girard,Michael R Strandet al. PLoS Pathogens, 2024, 20 (4), pp.e1011980. ⟨10.1371/journal.ppat.1011980⟩ Article dans une revue hal-04572197v1
Transcriptomic basis of sex loss in the pea aphid M D Huguet,Stéphanie Robin,Sylvie Hudaverdian,Sylvie Tanguy,Nathalie Prunier-Letermeet al. BMC Genomics, 2024, Bmc Genomics, 25 (1), pp.202. ⟨10.1186/s12864-023-09776-6⟩ Article dans une revue hal-04484084v1
Genomic insights into Spiroplasma endosymbionts that induce male-killing and protective phenotypes in the pea aphid Hiroshi Arai,Fabrice Legeai,Daisuke Kageyama,Akiko Sugio,Jean-Christophe Simon FEMS Microbiology Letters, 2024, 371, ⟨10.1093/femsle/fnae027⟩ Article dans une revue hal-04818782v1
Generic and queryable data integration schema for transcriptomics and epigenomics studies Yael Tirlet,Matéo Boudet,Emmanuelle Becker,Fabrice Legeai,Olivier Dameron Computational and Structural Biotechnology Journal, 2024, 23, pp.4232-4241. ⟨10.1016/j.csbj.2024.11.022⟩ Article dans une revue hal-04818860v1
Identification of transcriptional modules linked to the drought response of Brassica napus during seed development and their mitigation by early biotic stress Grégoire Bianchetti,Vanessa Clouet,Fabrice Legeai,Cécile Baron,Kévin Gazengelet al. Physiologia Plantarum, 2024, Physiologia Plantarum, 176 (1), pp.e14130. ⟨10.1111/ppl.14130⟩ Article dans une revue hal-04443649v1
Multiple deletions of candidate effector genes lead to the breakdown of partial grapevine resistance to downy mildew Manon Paineau,Andrea Minio,Pere Mestre,Frédéric Fabre,Isabelle D Mazetet al. New Phytologist, 2024, 243 (4), pp.1490-1505. ⟨10.1111/nph.19861⟩ Article dans une revue hal-04633322v1
First chromosome scale genomes of ithomiine butterflies (Nymphalidae: Ithomiini): comparative models for mimicry genetic studies Jérémy Gauthier,Joana Meier,Fabrice Legeai,Melanie McClure,Annabel Whibleyet al. Molecular Ecology Resources, In press, 23 (4), pp.872-885. ⟨10.1111/1755-0998.13749⟩ Article dans une revue hal-03926527v2
Genome-wide identification of lncRNAs associated with viral infection in Spodoptera frugiperda Stéphanie Robin,Fabrice Legeai,Véronique Jouan,Mylène Ogliastro,Isabelle Darboux Journal of General Virology, 2023, 104 (2), ⟨10.1099/jgv.0.001827⟩ Article dans une revue hal-04006610v1
MTG-Link: leveraging barcode information from linked-reads to assemble specific loci Anne Guichard,Fabrice Legeai,Denis Tagu,Claire Lemaitre BMC Bioinformatics, 2023, 24 (1), pp.284. ⟨10.1186/s12859-023-05395-w⟩ Article dans une revue hal-04166273v1
Contrasting Evolutionary Patterns Between Sexual and Asexual Lineages in a Genomic Region Linked to Reproductive Mode Variation in the pea aphid Maud Rimbault,Fabrice Legeai,Jean Peccoud,Lucie Mieuzet,Elsa Callet al. Genome Biology and Evolution, 2023, 15 (9), pp.evad168. ⟨10.1093/gbe/evad168⟩ Article dans une revue hal-04232477v1
Masculinization of the X-chromosome in aphid soma and gonads Julie Jaquiéry,Jean-Christophe Simon,Stéphanie Robin,Gautier Richard,Jean Peccoudet al. Peer Community Journal, 2022, 2, pp.e53. ⟨10.24072/pcjournal.166⟩ Article dans une revue hal-03999192v1
Host-plant adaptation as a driver of incipient speciation in the fall armyworm ( Spodoptera frugiperda ) Estelle Fiteni,Karine Durand,Sylvie Gimenez,Robert L. Meagher Jr.,Robert L Meagher Jr.et al. BMC Ecology and Evolution, 2022, 22, pp.133. ⟨10.1186/s12862-022-02090-x⟩ Article dans une revue hal-03813221v1
The evolutionary process of invasion in the fall armyworm (Spodoptera frugiperda) Sudeeptha Yainna,Wee Tek Tay,Karine Durand,Estelle Fiteni,Frédérique Hilliouet al. Scientific Reports, 2022, 12, pp.21063. ⟨10.1038/s41598-022-25529-z⟩ Article dans une revue hal-03926301v1
Multi-omic investigation of low-nitrogen conditional resistance to clubroot reveals Brassica napus genes involved in nitrate assimilation Y Aigu,Stéphanie Daval,Kévin Gazengel,Nathalie Marnet,C Lariagonet al. Frontiers in Plant Science, 2022, 13, pp.790563. ⟨10.3389/fpls.2022.790563⟩ Article dans une revue hal-03531145v1
Spodoptera littoralis genome mining brings insights on the dynamic of expansion of gustatory receptors in polyphagous noctuidae Camille Meslin,Pauline Mainet,Nicolas Montagné,Stéphanie Robin,Fabrice Legeaiet al. G3, 2022, 12 (8), pp.jkac131. ⟨10.1093/g3journal/jkac131⟩ Article dans une revue hal-03713321v1
Proteo-Trancriptomic Analyses Reveal a Large Expansion of Metalloprotease-Like Proteins in Atypical Venom Vesicles of the Wasp Meteorus pulchricornis (Braconidae) Jean-Luc Gatti,Maya Belghazi,Fabrice Legeai,Marc Ravallec,Marie Frayssinetet al. Toxins, 2021, 13 (7), pp.1-36. ⟨10.3390/toxins13070502⟩ Article dans une revue hal-03292170v1
AskoR, A R Package for Easy RNASeq Data Analysis Susete Alves Carvalho,Kévin Gazengel,Anthony Bretaudeau,Stéphanie Robin,Stéphanie Davalet al. Proceedings of The 1st International Electronic Conference on Entomology, 2021, ⟨10.3390/iece-10646⟩ Article dans une revue hal-04717074v1
LRez: C ++ API and toolkit for analyzing and managing Linked-Reads data Pierre Morisse,Claire Lemaitre,Fabrice Legeai Bioinformatics Advances, 2021, 1 (1), pp.1-4. ⟨10.1093/bioadv/vbab022⟩ Article dans une revue hal-03421103v1
Author Correction: Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization Jérémy Gauthier,Hélène Boulain,Joke J F A van Vugt,Lyam Baudry,Emma Persynet al. Communications Biology, 2021, 4, ⟨10.1038/s42003-021-02480-9⟩ Article dans une revue hal-04686846v1
Transcriptome Profiling of Starvation in the Peripheral Chemosensory Organs of the Crop Pest Spodoptera littoralis Caterpillars Erwan Poivet,Aurore Gallot,Nicolas Montagné,Pavel Senin,Christelle Monsempèset al. Insects, 2021, 12 (7), pp.573. ⟨10.3390/insects12070573⟩ Article dans une revue hal-03278298v1
Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization Jérémy Gauthier,Hélène Boulain,Joke J F A van Vugt,Lyam Baudry,Emma Persynet al. Communications Biology, 2021, 4 (1), pp.1-15. ⟨10.1038/s42003-020-01623-8⟩ Article dans une revue hal-03127732v1
Comparative transcriptome analysis at the onset of speciation in a mimetic butterfly—The Ithomiini Melinaea marsaeus Florence Piron-Prunier,Emma Persyn,Fabrice Legeai,Melanie Mcclure,Camille Meslinet al. Journal of Evolutionary Biology, 2021, 34 (11), pp.1704-1721. ⟨10.1111/jeb.13940⟩ Article dans une revue hal-03381525v1
Global patterns in genomic diversity underpinning the evolution of insecticide resistance in the aphid crop pest Myzus persicae Kumar Saurabh Singh,Erick Cordeiro,Bartlomiej Troczka,Adam Pym,Joanna Mackisacket al. Communications Biology, 2021, 4 (1), pp.847. ⟨10.1038/s42003-021-02373-x⟩ Article dans une revue hal-03313531v1
Plant‐phenotypic changes induced by parasitoid ichnoviruses enhance the performance of both unparasitized and parasitized caterpillars Antonino Cusumano,S Urbach,Fabrice Legeai,Marc Ravallec,Marcel Dickeet al. Molecular Ecology, 2021, 30 (18), pp.4567-4583. ⟨10.1111/mec.16072⟩ Article dans une revue hal-03287280v1
RNA sequencing data for responses to drought stress and/or clubroot infection in developing seeds of Brassica napus Grégoire Bianchetti,Vanessa Clouet,Fabrice Legeai,Cécile Baron,Kévin Gazengelet al. Data in Brief, 2021, 38, pp.1-11. ⟨10.1016/j.dib.2021.107392⟩ Article dans une revue (data paper) hal-03379739v1
Whole genome sequence of the soybean aphid, Aphis glycines. Jacob A Wenger,Bryan J Cassone,Fabrice Legeai,J Spencer Johnston,Raman Bansalet al. Insect Biochemistry and Molecular Biology, 2020, 123, pp.102917. ⟨10.1016/j.ibmb.2017.01.005⟩ Article dans une revue hal-01555244v1
Selection following Gene Duplication Shapes Recent Genome Evolution in the Pea Aphid Acyrthosiphon pisum Rosa Fernández,Marina Marcet-Houben,Fabrice Legeai,Gautier Richard,Stéphanie Robinet al. Molecular Biology and Evolution, 2020, 37 (9), pp.2601-2615. ⟨10.1093/molbev/msaa110⟩ Article dans une revue hal-03065353v1
The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest Claude Rispe,Fabrice Legeai,Paul Nabity,Rosa Fernández,Arinder Aroraet al. BMC Biology, 2020, 18 (1), pp.90. ⟨10.1186/s12915-020-00820-5⟩ Article dans une revue hal-02917617v1
Functional insights from the GC-poor genomes of two aphid parasitoids, &quot;Aphidius ervi&quot; and &quot;Lysiphlebus fabarum Alice Dennis,Gabriel Ballesteros,Stéphanie Robin,Lukas Schrader,Jens Bastet al. BMC Genomics, 2020, 21 (Art. 376), pp.1-27. ⟨10.1186/s12864-020-6764-0⟩ Article dans une revue hal-02649295v1
Adaptation by copy number variation increases insecticide resistance in the fall armyworm Sylvie Gimenez,Heba Abdelgaffar,Gaëlle Le Goff,Frédérique Hilliou,Carlos Blancoet al. Communications Biology, 2020, 3 (1), pp.1-10. ⟨10.1038/s42003-020-01382-6⟩ Article dans une revue hal-03065279v1
Big Genes, Small Effectors: Pea Aphid Cassette Effector Families Composed From Miniature Exons Matthew Dommel,Jonghee Oh,Jose Carlos Huguet-Tapia,Endrick Guy,Hélène Boulainet al. Frontiers in Plant Science, 2020, 11, pp.1-11. ⟨10.3389/fpls.2020.01230⟩ Article dans une revue hal-03065308v1
MinYS: mine your symbiont by targeted genome assembly in symbiotic communities Cervin Guyomar,Wesley Delage,Fabrice Legeai,Christophe Mougel,Jean-Christophe Simonet al. NAR Genomics and Bioinformatics, 2020, 2 (3), pp.1-11. ⟨10.1093/nargab/lqaa047⟩ Article dans une revue hal-02891885v1
Soybean aphid biotype 1 genome: Insights into the invasive biology and adaptive evolution of a major agricultural pest Rosanna Giordano,Ravi Kiran Donthu,Aleksey Zimin,Irene Consuelo Julca Chavez,Toni Gabaldonet al. Insect Biochemistry and Molecular Biology, 2020, 120, pp.1-24. ⟨10.1016/j.ibmb.2020.103334⟩ Article dans une revue hal-03065382v1
Genomic architecture of endogenous ichnoviruses reveals distinct evolutionary pathways leading to virus domestication in parasitic wasps Fabrice F. Legeai,Bernardo F Santos,Stéphanie Robin,Anthony Bretaudeau,Rebecca B Dikowet al. BMC Biology, 2020, 18 (1), pp.1-23. ⟨10.1186/s12915-020-00822-3⟩ Article dans une revue hal-02918230v1
Contrasting genomic and phenotypic outcomes of hybridization between pairs of mimetic butterfly taxa across a suture zone Jérémy Gauthier,Donna Lisa De‐silva,Zachariah Gompert,Annabel Whibley,Céline Houssinet al. Molecular Ecology, 2020, 29 (7), pp.1328-1343. ⟨10.1111/mec.15403⟩ Article dans une revue hal-02800429v1
Correction to: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest Claude Rispe,Fabrice Legeai,Paul Nabity,Rosa Fernández,Arinder Aroraet al. BMC Biology, 2020, 18 (1), pp.123. ⟨10.1186/s12915-020-00864-7⟩ Article dans une revue hal-05190973v1
Evidence for an ichnovirus machinery in parasitoids of coleopteran larvae Stéphanie Robin,Marc Ravallec,Marie Frayssinet,James Whitfield,Véronique Jouanet al. Virus Research, 2019, 263, pp.189-206. ⟨10.1016/j.virusres.2019.02.001⟩ Article dans une revue hal-02059774v1
Cytonuclear interactions remain stable during allopolyploid evolution despite repeated whole-genome duplications in Brassica Julie Ferreira de Carvalho,Jérémy Lucas,Gwenaëlle Deniot,Cyril Falentin,Olivier Filangiet al. The Plant Journal, 2019, 98 (3), pp.434-447. ⟨10.1111/tpj.14228⟩ Article dans une revue hal-02019346v1
RNA interference identifies domesticated viral genes involved in assembly and trafficking of virus-derived particles in ichneumonid wasps Ange Lorenzi,Marc Ravallec,Magali Eychenne,Véronique Jouan,Stéphanie Robinet al. PLoS Pathogens, 2019, 15 (12), pp.e1008210. ⟨10.1371/journal.ppat.1008210⟩ Article dans une revue hal-02483831v1
Differential Expression of Candidate Salivary Effector Genes in Pea Aphid Biotypes With Distinct Host Plant Specificity Hélène Boulain,Fabrice Legeai,Julie Jaquiéry,Endrick Guy,Stéphanie Morliereet al. Frontiers in Plant Science, 2019, 10, pp.1301. ⟨10.3389/fpls.2019.01301⟩ Article dans une revue hal-02378266v1
Characterization and expression profiling of microRNAs in response to plant feeding in two host-plant strains of the lepidopteran pest Spodoptera frugiperda Yves Moné,Sandra Nhim,Sylvie Gimenez,Fabrice Legeai,Imène Séninetet al. BMC Genomics, 2018, 19 (1), pp.1-15. ⟨10.1186/s12864-018-5119-6⟩ Article dans une revue hal-01926342v1
Fast Evolution and Lineage-Specific Gene Family Expansions of Aphid Salivary Effectors Driven by Interactions with Host-Plants Hélène Boulain,Fabrice Legeai,Endrick Guy,Stéphanie Morliere,Nadine Douglaset al. Genome Biology and Evolution, 2018, 10 (6), pp.1554-1572. ⟨10.1093/gbe/evy097⟩ Article dans une revue hal-01891942v1
Disentangling the Causes for Faster-X Evolution in Aphids Julie Jaquiéry,Jean Peccoud,Tiphaine Ouisse,Fabrice Legeai,Nathalie Prunier Letermeet al. Genome Biology and Evolution, 2018, 10 (2), pp.507-520. ⟨10.1093/gbe/evy015⟩ Article dans une revue hal-03276874v1
Genome sequence of the wheat stem sawfly, Cephus cinctus, representing an early-branching lineage of the Hymenoptera, illuminates evolution of hymenopteran chemoreceptors Robert Robertson,Robert Waterhouse,Kimberly Walden,Livio Ruzzante,Maarten Reijnderset al. Genome Biology and Evolution, 2018, 10 (11), pp.2997-3011. ⟨10.1093/gbe/evy232⟩ Article dans une revue hal-01926352v1
MiR-202 controls female fecundity by regulating medaka oogenesis Stéphanie Gay,Jérôme Bugeon,Amine Bouchareb,Laure Henry,Clara Delahayeet al. PLoS Genetics, 2018, 14 (9), pp.1-26. ⟨10.1371/journal.pgen.1007593⟩ Article dans une revue hal-01871468v1
Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches Cervin Guyomar,Fabrice Legeai,Emmanuelle Jousselin,Christophe Mougel,Claire Lemaitreet al. Microbiome, 2018, 6 (1), pp.1-21. ⟨10.1186/s40168-018-0562-9⟩ Article dans une revue hal-01926402v1
Identifying genomic hotspots of differentiation and candidate genes involved in the adaptive divergence of pea aphid host races Pierre Nouhaud,Mathieu Gautier,Anaïs Gouin,Julie Jaquiéry,Jean Peccoudet al. Molecular Ecology, 2018, 27 (16), pp.3287 - 3300. ⟨10.1111/mec.14799⟩ Article dans une revue hal-01892027v1
First extensive characterization of the venom gland from an egg parasitoid: structure, transcriptome and functional role Antonino Cusumano,Bernard Duvic,Véronique Jouan,Marc Ravallec,Fabrice Legeaiet al. Journal of Insect Physiology, 2018, 107, pp.68-80. ⟨10.1016/j.jinsphys.2018.02.009⟩ Article dans une revue hal-01837314v1
Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species Thomas C. Mathers,Yazhou Chen,Gemy Kaithakottil,Fabrice Legeai,Sam T. Mugfordet al. Genome Biology, 2017, 18 (1), pp.27. ⟨10.1186/s13059-016-1145-3⟩ Article dans une revue hal-01500475v1
Genome scans on experimentally evolved populations reveal candidate regions for adaptation to plant resistance in the potato cyst nematode Globodera pallida. Delphine Eoche-Bosy,Mathieu Gautier,Magali Esquibet,Fabrice Legeai,Anthony Bretaudeauet al. Molecular Ecology, 2017, 26 (18), pp.4700-4711. ⟨10.1111/mec.14240⟩ Article dans une revue hal-01605681v2
FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome Valentin Wucher,Fabrice Legeai,Benoit Hedan,Guillaume Rizk,Laëtitia Lagoutteet al. Nucleic Acids Research, 2017, 45 (8), pp.12. ⟨10.1093/nar/gkw1306⟩ Article dans une revue hal-01532061v1
Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges Anaïs Gouin,Anthony Bretaudeau,Kiwoong Nam,Sylvie Gimenez,Jean-Marc Auryet al. Scientific Reports, 2017, 7 (1), pp.1-12. ⟨10.1038/s41598-017-10461-4⟩ Article dans une revue hal-01633879v1
Long noncoding RNA repertoire in chicken liver and adipose tissue Kévin Muret,Christophe Klopp,Valentin Wucher,Diane Esquerré,Fabrice Legeaiet al. Genetics Selection Evolution, 2017, 49 (1), pp.6. ⟨10.1186/s12711-016-0275-0⟩ Article dans une revue hal-01431420v1
Dosage compensation and sex-specific epigenetic landscape of the X chromosome in the pea aphid. Gautier Richard,Fabrice Legeai,Nathalie Prunier-Leterme,Anthony Bretaudeau,Denis Taguet al. Epigenetics & Chromatin, 2017, 10 (1), pp.1-17. ⟨10.1186/s13072-017-0137-1⟩ Article dans une revue hal-01555242v1
Expression differences in Aphidius ervi (Hymenoptera: Braconidae) females reared on different aphid host species Gabriel I Ballesteros,Jürgen Gadau,Fabrice Legeai,Angelica Gonzalez-Gonzalez,Blas Lavanderoet al. PeerJ, 2017, 5, ⟨10.7717/peerj.3640⟩ Article dans une revue hal-02628911v1
Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species Thomas C. Mathers,Yazhou Chen,Gemy Kaithakottil,Fabrice Legeai,Sam T. Mugfordet al. Genome Biology, 2017, 18 (1), pp.63. ⟨10.1186/s13059-017-1202-6⟩ Article dans une revue hal-01588181v1
Differential gene expression according to race and host plant in the pea aphid Isobel Eyres,Julie Jaquiéry,Akiko Sugio,Ludovic Duvaux,Karim Gharbiet al. Molecular Ecology, 2016, 25 (17), pp.4197-4215. ⟨10.1111/mec.13771⟩ Article dans une revue hal-01371828v1
De novo transcriptome assembly of the grapevine phylloxera allows identification of genes differentially expressed between leaf- and root-feeding forms Claude Rispe,Fabrice Legeai,Daciana Papura,Anthony Bretaudeau,Sylvie Hudaverdianet al. BMC Genomics, 2016, 17 (1), pp.219. ⟨10.1186/s12864-016-2530-8⟩ Article dans une revue hal-01286528v1
Spodoptera frugiperda (Lepidoptera: Noctuidae) host-plant variants: two host strains or two distinct species? Pascaline Dumas,Fabrice Legeai,Claire Lemaitre,Erwan Scaon,Marion Orsucciet al. Genetica, 2015, 143 (3), pp.305-316. ⟨10.1007/s10709-015-9829-2⟩ Article dans une revue hal-01208780v2
Identification of long non-coding RNAs in insects genomes Fabrice Legeai,Thomas Derrien Current Opinion in Insect Science, 2015, 7, pp.37 - 44. ⟨10.1016/j.cois.2015.01.003⟩ Article dans une revue (article de synthèse) hal-01240461v1
Differential expression of the chemosensory transcriptome in two populations of the stemborer Sesamia nonagrioides Nicolas Glaser,Aurore Gallot,Fabrice Legeai,Myriam Harry,Laure Kaiseret al. Insect Biochemistry and Molecular Biology, 2015, 65, pp.28-34. ⟨10.1016/j.ibmb.2015.07.008⟩ Article dans une revue istex hal-03419818v1
BioMAJ2Galaxy: automatic update of reference data in Galaxy using BioMAJ Anthony Bretaudeau,Cyril Monjeaud,Yvan Le Bras,Fabrice Legeai,Olivier Collin GigaScience, 2015, 4, pp.22. ⟨10.1186/s13742-015-0063-8⟩ Article dans une revue hal-01240449v1
Whole-genome re-sequencing of non-model organisms: lessons from unmapped reads Anaïs Gouin,Fabrice Legeai,Pierre Nouhaud,Annabel Whibley,Jean-Christophe Simonet al. Heredity, 2015, 114, pp.494-501. ⟨10.1038/hdy.2014.85⟩ Article dans une revue hal-01081094v1
Genetic control of contagious asexuality in the pea aphid Julie Jaquiéry,Jean Peccoud,Tiphaine Ouisse,Fabrice Legeai,Nathalie Prunier-Letermeet al. PLoS Genetics, 2014, 10 (12), pp.e1004838. ⟨10.1371/journal.pgen.1004838⟩ Article dans une revue hal-01701165v1
Establishment and analysis of a reference transcriptome for Spodoptera frugiperda Fabrice Legeai,Sylvie Gimenez,Bernard Duvic,Jean-Michel Escoubas,Anne-Sophie Gosselin Grenetet al. BMC Genomics, 2014, 15 (1), pp.704. ⟨10.1186/1471-2164-15-704⟩ Article dans une revue hal-01058982v1
A Comparison of the Olfactory Gene Repertoires of Adults and Larvae in the Noctuid Moth Spodoptera littoralis Erwan E. Poivet,Aurore Gallot,Nicolas Montagne,Nicolas Glaser,Fabrice Legeaiet al. PLoS ONE, 2013, 8 (4), pp.e60263. ⟨10.1371/journal.pone.0060263⟩ Article dans une revue hal-01971440v1
Masculinization of the X Chromosome in the Pea Aphid Julie Jaquiéry,Claude Rispe,Denis Roze,Fabrice Legeai,Gaël Le Trionnaireet al. PLoS Genetics, 2013, 9 (8), pp.e1003690. ⟨10.1371/journal.pgen.1003690⟩ Article dans une revue hal-00916967v1
A comparison of the olfactory gene repertoires of adults and larvae in the noctuid moth Spodoptera littoralis Erwan Poivet,Aurore Gallot,Nicolas Montagné,Nicolas Glaser,Fabrice Legeaiet al. PLoS ONE, 2013, 8 (4), pp.e60263. ⟨10.1371/journal.pone.0060263⟩ Article dans une revue hal-00916952v1
Candidate Chemosensory Genes in the Stemborer Sesamia nonagrioides Nicolas Glaser,Aurore Gallot,Fabrice Legeai,Nicolas Montagne,Erwan E. Poivetet al. International Journal of Biological Sciences, 2013, 9 (5), pp.481-495. ⟨10.7150/ijbs.6109⟩ Article dans une revue hal-01971488v1
Candidate chemosensory genes in female antennae of the noctuid moth Spodoptera littoralis. Emmanuelle Jacquin-Joly,Fabrice Legeai,Nicolas Montagné,Christelle Monsempes,Marie-Christine Françoiset al. International Journal of Biological Sciences, 2012, 8 (7), pp.1036-50. ⟨10.7150/ijbs.4469⟩ Article dans une revue hal-00753414v1
Transcriptomic profiling of the reproductive mode switch in the pea aphid in response to natural autumnal photoperiod. Gaël Le Trionnaire,Stéphanie Jaubert-Possamai,Joël Bonhomme,Jean-Pierre Gauthier,Grégory Guernecet al. Journal of Insect Physiology, 2012, 58 (12), pp.1517-1524. ⟨10.1016/j.jinsphys.2012.07.009⟩ Article dans une revue istex hal-00753429v1
TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes. Philippe Leroy,Nicolas Guilhot,Hiroaki Sakai,Aurélien Bernard,Frédéric Chouletet al. Frontiers in Plant Science, 2012, 3, pp.5. ⟨10.3389/fpls.2012.00005⟩ Article dans une revue hal-00753407v1
Genome scans reveal candidate regions involved in the adaptation to host plant in the pea aphid complex. Julie Jaquiéry,Solenn Stoeckel,P. Nouhaud,L. Mieuzet,F. Mahéoet al. Molecular Ecology, 2012, 21 (21), pp.5251-64. ⟨10.1111/mec.12048⟩ Article dans une revue istex hal-00753439v1
Accelerated evolution of sex chromosomes in aphids, an X0 system. Julie Jaquiéry,Solenn Stoeckel,Claude Rispe,Lucie Mieuzet,Fabrice Legeaiet al. Molecular Biology and Evolution, 2012, 29 (2), epub ahead of print. ⟨10.1093/molbev/msr252⟩ Article dans une revue hal-00639983v1
Comparison of gene repertoires and patterns of evolutionary rates in eight aphid species that differ by reproductive mode. M. Ollivier,T. Gabaldón,J. Poulain,Frédérick F. Gavory,N. Letermeet al. Genome Biology and Evolution, 2012, 4 (2), pp.155-67. ⟨10.1093/gbe/evr140⟩ Article dans une revue hal-00753402v1
An Expressed Sequence Tag collection from the male antennae of the Noctuid moth Spodoptera littoralis: a resource for olfactory and pheromone detection research. Fabrice Legeai,Sébastien Malpel,Nicolas Montagné,Christelle Monsempes,François Cousseranset al. BMC Genomics, 2011, 12 (86), pp.86. ⟨10.1186/1471-2164-12-86⟩ Article dans une revue hal-00723049v1
Cabomba as a model for studies of early angiosperm evolution. Aurelie C M Vialette-Guiraud,Michael Alaux,Fabrice Legeai,Cedric Finet,Pierre Chambrieret al. Annals of Botany, 2011, 108 (4), pp.589-98. ⟨10.1093/aob/mcr088⟩ Article dans une revue hal-00855948v1
Genomic approach to study floral development genes in Rosa sp. Annick Dubois,Arnaud A. Remay,Olivier Raymond,Sandrine Balzergue,Aurélie Chauvetet al. PLoS ONE, 2011, 6 (12), ⟨10.1371/journal.pone.0028455⟩ Article dans une revue hal-00753396v1
Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements. E. d'Alençon,H. Sezutsu,Fabrice Legeai,E. Permal,S. Bernard-Samainet al. Proceedings of the National Academy of Sciences of the United States of America, 2010, 107 (17), pp.7680-5. ⟨10.1073/pnas.0910413107⟩ Article dans une revue inria-00537908v1
Comparative analysis of the Acyrthosiphon pisum genome and expressed sequence tag-based gene sets from other aphid species. Morgane Ollivier,Fabrice Legeai,Claude Rispe Insect Molecular Biology, 2010, 19 Suppl 2 (s2), pp.33-45. ⟨10.1111/j.1365-2583.2009.00976.x⟩ Article dans une revue istex inria-00537902v1
Analysis of virion structural components reveals vestiges of the ancestral ichnovirus genome. Anne-Nathalie Volkoff,Véronique Jouan,Serge Urbach,Sylvie Samain,Max Bergoinet al. PLoS Pathogens, 2010, 6 (5), pp.e1000923. ⟨10.1371/journal.ppat.1000923⟩ Article dans une revue inria-00537901v1
AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome. Fabrice Legeai,Shuji Shigenobu,Jean-Pierre Gauthier,John Colbourne,Claude Rispeet al. Insect Molecular Biology, 2010, 19 (s2), pp.5-12. ⟨10.1111/j.1365-2583.2009.00930.x⟩ Article dans une revue hal-02658827v1
Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum. Fabrice Legeai,Guillaume Rizk,Thomas Walsh,Owain Edwards,Karl Gordonet al. BMC Genomics, 2010, 11 (1), pp.281. ⟨10.1186/1471-2164-11-281⟩ Article dans une revue inserm-00482283v1
Transcriptomic and proteomic analyses of seasonal photoperiodism in the pea aphid. Gaël Le Trionnaire,F. Francis,S. Jaubert-Possamai,J. Bonhomme,E. de Pauwet al. BMC Genomics, 2009, 10, pp.456. ⟨10.1186/1471-2164-10-456⟩ Article dans une revue inria-00435791v1
New resources for studying the rose flowering process. F. Foucher,M. Chevalier,C. Corre,Vanessa Soufflet-Freslon,F. Legeaiet al. Genome, 2008, 51 (10), pp.827-37. ⟨10.1139/G08-067⟩ Article dans une revue hal-00729892v1
A physical map of the heterozygous grapevine 'Cabernet Sauvignon' allows mapping candidate genes for disease resistance Marco Moroldo,Sophie Paillard,Raffaella Marconi,Fabrice Legeai,Aurélie Canaguieret al. BMC Plant Biology, 2008, 8 (66), pp.1-14. ⟨10.1186/1471-2229-8-66⟩ Article dans une revue inria-00329169v1
Large Gene Family Expansion and Variable Selective Pressures for Cathepsin B in Aphids Claude Rispe,Mayako Kutsukabe,Vincent Doublet,Sylvie Hudaverdian,Fabrice Legeaiet al. Molecular Biology and Evolution, 2007, 25 (Oct 13), pp.5-17. ⟨10.1093/molbev/msm222⟩ Article dans une revue inria-00180087v1
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Olivier Jaillon,Jean-Marc Aury,Benjamin Noel,Alberto Policriti,Christian Clepetet al. Nature, 2007, 449 (7161), pp.463-7. ⟨10.1038/nature06148⟩ Article dans une revue inria-00180136v1
AphidBase: a database for aphid genomic resources Jean-Pierre Gauthier,Fabrice Legeai,Alain Zasadzinski,Claude Rispe,Denis Tagu Bioinformatics, 2007, 23 (6), pp.783-784. ⟨10.1093/bioinformatics/btl682⟩ Article dans une revue inria-00180141v1
Strong Heterogeneity in Nucleotidic Composition and Codon Bias in the Pea Aphid (Acyrthosiphon pisum) Shown by EST-Based Coding Genome Reconstruction. Claude Rispe,Fabrice Legeai,Jean-Pierre Gauthier,Denis Tagu Journal of Molecular Evolution, 2007, Oct 10 (4), pp.413-424. ⟨10.1007/s00239-007-9023-y⟩ Article dans une revue istex inria-00180094v1
Anchoring of a large set of markers onto a BAC library for the development of a draft physical map of the grapevine genome Didier Lamoureux,Anne Bernole,Isabelle Le Clainche,Sarah Tual,Vincent Thareauet al. TAG Theoretical and Applied Genetics, 2006, 113 (2), pp.344-356. ⟨10.1007/s00122-006-0301-7⟩ Article dans une revue istex inria-00180148v1
Large-scale gene discovery in the pea aphid Acyrthosiphon pisum (Hemiptera) Beatriz Sabater-Munoz,Fabrice Legeai,Claude Rispe,Joël Bonhomme,Peter Deardenet al. Genome Biology, 2006, 7-3 (r21), pp.1-11. ⟨10.1186/gb-2006-7-3-r21⟩ Article dans une revue inria-00180157v1
Anchoring of a large set of markers onto a BAC library for the development of a draft physical map of the grapevine genome. D. Lamoureux,A. Bernole,I. Le Clainche,S. Tual,V. Thareauet al. Theor Appl Genet., 2006, 113, pp.344-356 Article dans une revue hal-00108235v1
Expressed sequence tags from the phytopathogenic fungus Botrytis cinerea Muriel Viaud,F. Legeai,J.M. Pradier,Yves Brygoo,Frédérique Bittonet al. European Journal of Plant Pathology, 2005, 111, pp.139-146 Article dans une revue hal-02671863v1
Annotated expressed sequence tags for studies of the regulation of reproductive modes in aphids Denis Tagu,N. Prunier-Leterme,F. Legeai,J.-P Gauthier,A Duclertet al. Insect Biochemistry and Molecular Biology, 2004, 34, pp.809 - 822. ⟨10.1016/j.ibmb.2004.05.001⟩ Article dans une revue hal-02915291v1
Predotar: a tool for rapidly screening proteomes for N-terminal targeting sequences Ian Small,Nemo Peeters,F. Legeai,Claire Lurin Proteomics, 2004, 4 (6), pp.1581-1590. ⟨10.1002/pmic.200300776⟩ Article dans une revue istex hal-02683504v1
Study of simple sequence repeat (SSR) markers from wheat expressed sequence tags (ESTs) N. Nicot,V. Chiquet,B. Gandon,Laurence Amilhat,F. Legeaiet al. TAG Theoretical and Applied Genetics, 2004, 109 (4), pp.800-805. ⟨10.1007/s00122-004-1685-x⟩ Article dans une revue istex hal-02682409v1
Large-scale identification of genes in the fungus Hebeloma cylindrosporum paves the way to molecular analyses of ectomycorrhizal symbiosis R. Lambilliote,R. Cooke,Dylan Samson,Cécile Fizames,Frédéric Gaymardet al. New Phytologist, 2004, 164 (3), pp.505-513. ⟨10.1111/j.1469-8137.2004.01185.x⟩ Article dans une revue hal-02673408v1
GénoPlante-Info (GPI): a collection of databases and bioinformatics resources for plant genomics Dylan Samson,F. Legeai,Emmanuelle Karsenty,Sébastien Reboux,J.B. Veyrieraset al. Nucleic Acids Research, 2003, 31 (1), pp.179-182. ⟨10.1093/nar/gkg060⟩ Article dans une revue hal-02682546v1

Communication dans un congrès (56)

Modular composition of SPARQL queries for focusing on what to look for rather than how to get it Yael Tirlet,Jerven Bolleman,Emmanuelle Becker,Fabrice Legeai,Olivier Dameron SWAT4HCLS 2026 - Semantic Web Applications and Tools for Healthcare and Life Sciences, Mar 2026, Amsteram, Netherlands Communication dans un congrès hal-05500877v1
Enhanced Genome Assemblies of French-Bred Dactylis glomerata and Medicago sativa: Achieving High-Quality Tetraploid Genomes Marie Pegard,Adela Poublan-Couzardot,Philippe Barre,Simon de Givry,Christine Gaspinet al. FCAG 2025 - 36th Meeting of the EUCARPIA Fodder Crops and Amenity Grasses Section, Aberystwyth University, Sep 2025, Aberystwyth, United Kingdom. pp.1-2 Communication dans un congrès hal-05265025v1
SVJedi-Tag : a novel method for genotyping large inversions with linked-read data Mélody Temperville,Fantine Benoit,Claire Mérot,Fabrice Legeai,Claire Lemaitre JOBIM 2025 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2025, Bordeaux, France. pp.1-9 Communication dans un congrès hal-05393269v1
Search for key regulators of endogenous viruses replication in ichneumonid wasps through differential gene expression analysis Yael Tirlet,Mélanie Ribeiro Lopes,Véronique Jouan,Pierre-Alain Girard,Stéphanie Robinet al. 8. International Entomophagous Insects Conference (IEIC), Jul 2025, Tours, France Communication dans un congrès hal-05290690v1
Understanding the limits of pangenome graphs for the analysis of large inversions in a complex of butterfly species Sandra Romain,Fabrice Legeai,Claire Lemaitre 2024 - International Environmental and Agronomical Genomics symposium, Feb 2024, Toulouse, France. pp.1-1 Communication dans un congrès hal-04721489v1
Plam weevil odorant receptors: Omics, functional characterization, and evolution Emmanuelle Jacquin-Joly,Stéphanie Robin,Fabrice Legeai,Anthony Bretaudeau,Rémi Capoduroet al. Entomology Society of America annual meeting, Entomology 2023, ESA, Nov 2023, National Harbor (Maryland), United States Communication dans un congrès hal-05567453v1
The red palm weevil chemical ecology in the OMICS and post-genomic eras Emmanuelle Jacquin-Joly,Stéphanie Robin,Fabrice Legeai,Anthony Bretaudeau,Rémi Capoduroet al. Annual meeting of the International Society of Chemical Ecology, International Society of Chemical Ecology, Jul 2023, Bangalore, India Communication dans un congrès hal-05567992v1
Multiple expansion and contraction events in two major chemosensory gene families in aphids Sergio Gabriel Olvera-Vazquez,Xilong Chen,Camille Meslin,Yann Bourgeois,Lougmani, Céliaet al. Congrès de la Société Européenne de Biologie Evolutive, Aug 2022, Prague, Czech Republic Communication dans un congrès anses-04546901v1
The red palm weevil Rhynchophorus ferrugineus in the OMICS and post-genomic eras Stéphanie Robin,Fabrice Legeai,Anthony Bretaudeau,Carole Vincent-Monégat,Nicolas Parisotet al. Seventh International Date Palm Conference, Khalifa, Mar 2022, Abu Dabi, United Arab Emirates Communication dans un congrès hal-05567958v1
Intégration de données de phénotypiques, environnementales et de biodiversité à l'aide des technologies du Web Sémantique Olivier Dameron,Yael Tirlet,Matéo Boudet,Fabrice Legeai SYSINFO-INRAe 2022 - Journées INRAE systèmes d'information pour les données agro-environnementales, Nov 2022, Clermont-Ferrand, France Communication dans un congrès hal-03893738v1
Red palm weevil omics bring insights into its chemical ecology and the evolution of Coleoptera pheromone receptors Nicolas Montagné,Rémi Capoduro,Arthur Comte,Stéphanie Robin,Fabrice Legeaiet al. 17th European Symposium for insect taste and olfaction, May 2022, Kristianstadt, Sweden Communication dans un congrès hal-05567471v1
AskoR, A R Package for Easy RNASeq Data Analysis Susete Alves Carvalho,Kévin Gazengel,Anthony Bretaudeau,Stéphanie Robin,Stéphanie Davalet al. IECE 2021 - 1st International Electronic Conference on Entomology, Jul 2021, Virtual, France. pp.1-8, ⟨10.3390/IECE-10646⟩ Communication dans un congrès hal-03347665v1
MTG-Link: filling gaps in draft genome assemblies with linked read data Anne Guichard,Fabrice Legeai,Denis Tagu,Claire Lemaitre JOBIM 2021 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2021, Paris, France. pp.1-8 Communication dans un congrès hal-03441914v1
LEVIATHAN: efficient discovery of large structural variants by leveraging long-range information from Linked-Reads data Pierre Morisse,Fabrice Legeai,Claire Lemaitre JOBIM 2021 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2021, Paris, France. pp.1-8 Communication dans un congrès hal-03441874v1
Reference-guided genome assembly in metagenomic samples Cervin Guyomar,Wesley Delage,Fabrice Legeai,Christophe Mougel,Jean-Christophe Simonet al. JOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. pp.1-8 Communication dans un congrès hal-02308257v1
The virus particles of Bathyplectes spp., parasitoids of the alfalfa weevil, are related to ichnoviruses Stéphanie Robin,Marc Ravallec,Marie Frayssinet,James B. Whitfield,Véronique Jouanet al. 6. International Entomophagous Insects Conference, Sep 2019, Perugia, Italy Communication dans un congrès hal-02463374v1
Co-evolution of chloroplast and nuclear genomes in flowering plants and impact of allopolyploidy on fine tune cytonuclear interactions. Mathieu Rousseau-Gueutin,Julie Ferreira de Carvalho,Jérémy Lucas,Gwenaëlle Deniot,Cyril Falentinet al. International Conference on Polyploidy, Jun 2019, Ghent, Belgium Communication dans un congrès hal-03318182v1
Cytonuclear interactions remain stable during allopolyploid evolution despite repeated wholegenome duplications Julie Ferreira de Carvalho,Jérémy Lucas,Gwenaëlle Deniot,Cyril Falentin,Olivier Filangiet al. 21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2019, Saint Malo, France Communication dans un congrès hal-04665569v1
AskOmics: a user-friendly interface to Semantic Web technologies for integrating local datasets with reference resources Xavier Garnier,Anthony Bretaudeau,Fabrice Legeai,Anne Siegel,Olivier Dameron JOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. pp.1 Communication dans un congrès hal-02401750v1
Structural and functional evolutionary dynamics of duplicated genes and genomes in nascent and natural B. napus Mathieu Rousseau-Gueutin,Jérémy Lucas,France Denoeud,Julie Ferreira de Carvalho,Zhesi Heet al. 21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2019, Saint-Malo, France Communication dans un congrès hal-03318226v1
Key Note speaker Plant resistance and architecture for protection of pulses against biotic stresses Marie-Laure Pilet-Nayel,A-A. Josselin,Gilles Boutet,Angélique Lesné,Fabrice Legeaiet al. 9. International Conference on Legume Genetics and Genomics (ICLGG 2019), Let's harness the potential of legumes, May 2019, Dijon, France Communication dans un congrès hal-02737260v1
Plant resistance and architecture for protection of pulses against pathogens Marie-Laure Pilet-Nayel,Ambre-Aurore Josselin,Gilles Boutet,Angélique Lesné,Fabrice Legeaiet al. Transversal Symposium GIS BV, Investment for the future, Projects in plant Biology, Oct 2019, Paris, France Communication dans un congrès hal-02737585v1
Identification of differentially expressed long non-coding RNAs (lncRNAs) in response to viral infection in S. frugiperda hemocytes Fabrice Legeai,Stéphanie Robin,Marie Helene Ogliastro,Isabelle Darboux 10. International Workshop on Molecular Biology and Genetics of the Lepidoptera, Aug 2018, Kolympari, Greece Communication dans un congrès hal-01988642v1
Influence of nitrogen constraint on quantitative resistance to clubroot in Brassica napus Antoine Gravot,Anne Laperche,Stéphanie Daval,Yoann Aigu,Solenn Guichardet al. 21st Crucifer Genetics Conference - Brassica - Wokshop Clubroot, 2018, Saint-Malo, France Communication dans un congrès hal-03348628v1
How a polyploid becomes a new species: example from the Brassica model. Mathieu Rousseau-Gueutin,Julie Ferreira de Carvalho,J. Lucas,France Denoeud,Fabrice Legeaiet al. International Conference on Environmental and Agronomical Genomics, 2018, Paris, France Communication dans un congrès hal-03318223v1
From diploids to a huge diversity ready-to-use for oilseed rape breeding. Sophie Paillard,Maryse Lodé-Taburel,Gwenn Trotoux,Frederique Eber,Marie-Madeleine Giletet al. 21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2018, Saint-Malo, France Communication dans un congrès hal-03318160v1
Quantitative resistance to clubroot and interactions with abiotic stresses Antoine Gravot,Anne Laperche,Stéphanie Daval,Yoann Aigu,Solenn Guichardet al. IOBC-WPRS WG 'Pesticides and Beneficial Organisms', 2018, Zagreb, Croatia. pp.25-26 Communication dans un congrès hal-03349115v1
Influence of nitrogen constraint on quantitative resistance to clubroot in Brassica napus Antoine Gravot,Yoann Aigu,Anne Laperche,Stéphanie Daval,Solenn Guichardet al. International Clubroot Workshop, 2018, Edmonton, Canada Communication dans un congrès hal-03349054v1
Cytonuclear interactions overcome inter-genomic conflict resulting from interspecific hybridization and genome doubling Julie Ferreira de Carvalho,Jérémy Lucas,Cyril Falentin,Gwenaëlle Deniot,Olivier Filangiet al. Second Joint Congress on Evolutionary Biology, Aug 2018, Montpellier, France Communication dans un congrès hal-03318235v1
Integrative genomics and gene networks for studying phenotypic plasticity in the pea aphid Valentin Wucher,Fabrice Legeai,Lucas Bourneuf,Thomas Derrien,Aurore Gallotet al. 10th Arthropod Genomics Symposium, Jun 2017, Notre Dame, United States Communication dans un congrès hal-01566438v1
AskOmics, a web tool to integrate and query biological data using semantic web technologies Xavier Garnier,Anthony Bretaudeau,Olivier Filangi,Fabrice Legeai,Anne Siegelet al. JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France. pp.1 Communication dans un congrès hal-01577425v1
Integration of Linked Data into Galaxy using Askomics Xavier Garnier,Olivier Dameron,Olivier Filangi,Fabrice Legeai,Anthony Bretaudeau Galaxy Community Conference, Jun 2017, Montpellier, France Communication dans un congrès hal-01576870v1
Spodoptera genomes in the BIPAA information system Stéphanie Robin,Fabrice Legeai International Conference on Management of Destructive Agricultural Pests Spodoptera (Noctuidae), Nov 2017, Chongqing, China Communication dans un congrès hal-04176810v1
Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches Cervin Guyomar,Fabrice Legeai,Christophe Mougel,Claire Lemaitre,Jean-Christophe Simon International Conference on Holobionts, Apr 2017, Paris, France Communication dans un congrès hal-01638839v1
Recurrent domestication of viral genomes leads to different virulence strategies in ichneumonid wasps Jean Marc Aury,Valérie Barbe,Annie Bezier,Jean-Michel Drezen,Véronique Jouanet al. Réunion du réseau ADALEP, 2016, Paris, France Communication dans un congrès hal-01991475v1
BIPAA/Askomics, a new and easy approach for querying genomics and epigenomics elements in interaction Fabrice Legeai,Charles Bettembourg,Anthony Bretaudeau,Yvanne Chaussin,Olivier Dameronet al. XXVth International Congress of Entomology 2016, Sep 2016, Orlando, Florida, United States Communication dans un congrès hal-01391080v1
Mechanisms of transfer of virulence molecules in ichneumonid wasps Anne-Nathalie Volkoff,Apolline Pichon,Magali Eychenne,Marc Ravallec,Antoine Bézieret al. 25th International Congress of Entomology (ICE 2016), Sep 2016, Orlando, United States Communication dans un congrès hal-01988646v1
Genome scans on experimentaly evolved globodera pallida populations to identify molceular basis of adaptation to GPAV(VRN) potato resistance Delphine Eoche-Bosy,Magali Esquibet,Sylvain Fournet,Mathieu Gautier,Fabrice Legeaiet al. Joint Meeting of the Society of Nematologists and the Organization of Nematologists of Tropical America (ONTA), 2016, Jul 2016, Montreal, Canada. 387 p Communication dans un congrès hal-01602955v1
Using genomic tools to unravel parasitic wasp genome evolution via acquisition of viral genomes Anne-Nathalie Volkoff,Jean-Michel Drezen,Serge Urbach,Apolline Pichon,Véronique Jouanet al. Arthropod Genomics Symposium, 2015, Manhattan, Kansas, United States Communication dans un congrès hal-01991470v1
The chemosensory transcriptome of the cotton leafworm Spodoptera littoralis Emmanuelle Joly,Erwan Poivet,Aurore Gallot,Fabrice Legeai,Nicolas Montagné 24. Annual Meeting of the European-Chemoreception-Research-Organization (ECRO), 2015, NA, France Communication dans un congrès hal-01208791v1
AskOmics : Intégration et interrogation de réseaux de régulation génomique et post-génomique Charles Bettembourg,Olivier Dameron,Anthony Bretaudeau,Fabrice Legeai IN OVIVE (INtégration de sources/masses de données hétérogènes et Ontologies, dans le domaine des sciences du VIVant et de l’Environnement), Institut National de Recherche en Informatique et en Automatique (INRIA). Rennes, FRA., Jun 2015, Rennes, France. pp.7 Communication dans un congrès hal-01184903v1
The grape phylloxera genome sequencing project François Delmotte,Daciana Papura,Claude Rispe,Fabrice Legeai,Julie Jaquiéryet al. 6. International Phylloxera Symposium, Aug 2013, Bordeaux, France Communication dans un congrès hal-01208725v1
Integration of miRNAs data into a gene network of the pea aphid. Valentin Wucher,Jacques Nicolas,Fabrice F. Legeai,Hervé Seitz,Denis Tagu 7th International Symposium on Molecular Insect Science., 2014, Amsterdam, Netherlands Communication dans un congrès hal-01566284v1
Long non-­‐coding RNA in the pea aphid; identification and comparative expression in sexual and asexual embryos Fabrice Legeai,Thomas Derrien,Valentin Wucher,David Audrey,Gaël Le Trionnaireet al. Arthropod Genomics Symposium, Jun 2014, Urbana, United States Communication dans un congrès hal-01091304v1
A study of phylloxera transcriptomes, comparing root and leaf feeding morphs Claude Rispe,Daciana Papura,Fabrice Legeai,Julie Jaquiéry,Anthony Bretaudeauet al. 6. International Phylloxera Symposium, Institut National de Recherche Agronomique (INRA). UMR Ecophysiologie et Génomique Fonctionnelle de la Vigne (1287)., Aug 2013, Bordeaux, France. 59 p Communication dans un congrès hal-01208647v1
Whole genome re-sequencing : lessons from unmapped reads Anaïs Gouin,Pierre Nouhaud,Fabrice Legeai,Guillaume Rizk,Jean-Christophe Simonet al. Journées Ouvertes Biologie Informatique Mathématiques, Jul 2013, Toulouse, France Communication dans un congrès hal-00907446v1
AphidAtlas : avancées récentes Anthony Bretaudeau,Olivier Dameron,Fabrice Legeai,Yvan Rahbé BAPOA 2013 MOP, Oct 2013, Montpellier, France Communication dans un congrès hal-00913155v1
The antennal transcriptome of a moth Emmanuelle Jacquin-Joly,Fabrice Legeai,Sébastien Malpel,Nicolas Montagné,Christelle Monsempeset al. The 20th Congress of the European Chemoreception Research Organisation (ECRO), Sep 2010, Avignon, France. pp.E29 Communication dans un congrès hal-00714719v1
Physical mapping and re-sequencing of a set of resistance related genes in grapevine Marco Moroldo,Sophie Paillard,R. Marconi,Fabrice Legeai,Aurelie Canaguieret al. 17. Conference Plant and Animal Genomes, Labo/service de l'auteur, Ville service, Pays service., Jan 2009, San Diego, United States. 1 p Communication dans un congrès hal-01462667v1
URGI genome annotation system:an integrated system for structural and functional genome annotation Joelle J. Amselem,Michael Alaux,Nathalie Choisne,Nicolas Lapalu,Baptiste Braultet al. 12. Edition du colloque JOBIM : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2011, Paris, France. 2 p Communication dans un congrès hal-01019754v1
The antennal transcriptome of a moth Emmanuelle Jacquin-Joly,Fabrice Legeai,Sebastien S. Malpel,Nicolas Montagné,Christelle Monsempeset al. 20. Congress of European Chemoreception Research Organization (ECRO-2010), Sep 2010, Avignon, France. pp.E29-E30 Communication dans un congrès hal-01001560v1
Prediction and analyzes of non coding RNA sequences in the pea aphid genome Fabrice Legeai,Guillaume Rizk,T. Walsh,Owain Edwards,Jacques Nicolaset al. Arthropods Genomics, Jun 2010, Kansas City, United States Communication dans un congrès inria-00537927v1
GnpAnnot community annotation system: features, qualifiers, values Stéphanie Sidibe-Bocs,Fabrice Legeai,Gaëtan Droc,Mathieu Rouard,Michael M. Alauxet al. 3. International Biocuration Conference, Apr 2009, Berlin, Germany Communication dans un congrès hal-02758372v1
Lepido-DB, a new bioinformatic resource for the annotation and cross-comparisons of lepidopteran genomes. Fabrice Legeai,Emmanuelle d'Alençon,François Cousserans,Hideki Sezutsu,Emmanuelle Permalet al. The Eighth International Workshop on MOLECULAR BIOLOGY AND GENETICS OF THE LEPIDOPTERA, Aug 2009, Kolimpari, Greece Communication dans un congrès inria-00435820v1
From AphidBase and Lepido-DB to an Information System for Insect Plant pest genomics studies. Fabrice Legeai,Jean-Pierre Gauthier,François Cousserans,Emmanuelle d'Alençon,Olivier Collinet al. 1st Workshop on Information System for Insect Pest, Nov 2009, Rennes, France Communication dans un congrès inria-00435823v1
Apollo: a tool for the manual annotation of the pea aphid genome Fabrice Legeai,Jean-Pierre Gauthier,Denis Tagu Pea Aphid Genome Annotation Workshop, Jul 2008, Princeton, United States Communication dans un congrès inria-00329196v1

Poster de conférence (31)

BReIF: une e-infrastructure pour accélérer l'utilisation de ressources biologiques diversifiées Anne-Françoise Adam-Blondon,Christine Gaspin,Michèle Tixier-Boichard,Hélène Chiapello,Frédéric Chouletet al. Trans Numériques 2026, Feb 2026, Rennes, France. Poster de conférence hal-05514911v1
Holograph: a generic RDF schema to handle data from agroecological holobionts Marie Lahaye,Alice Mataigne,Edmond Berne,Matéo Boudet,Olivier Dameronet al. SWAT4HCLS, Mar 2026, Amsterdam, France. 2026 Poster de conférence hal-05486358v1
A Strategy for Balanced Haplotype-Resolved De Novo Assembly of the Autotetraploid Genome of Medicago sativa Adela Poublan-Couzardot,Bernadette Julier,Marie Pégard,Simon De Givry,Christine Gaspinet al. JOBIM 2025 (Journées ouvertes de Bio-Informatique 2025), Jul 2025, Bordeaux, France Poster de conférence hal-05208435v1
GWASpipe: a Nexflow pipeline for GWAS analyses incorporating quality control Sophia Marguerit,Marc Galland,Cervin Guyomar,Jacques Lagnel,Fabrice Legeaiet al. JOBIM, événement annuel de la bioinformatique et de la biostatistique francophone, Jul 2025, Bordeaux, France. ⟨10.15454/1.5572369328961167E12⟩ Poster de conférence hal-05265454v1
Data modeling in agroecology: a schema to characterize plant holobiont and environmental data A Mataigne,M Lahaye,V Loux,A-F Adam-Blondon,A Siegelet al. JOBIM, Jul 2025, Bordeaux, France Poster de conférence hal-05124712v1
GrAuFlow: A snakemake workflow for pangenome graph augmentation using short read data Antoine Malet,Fabrice Legeai,Ludovic Duvaux,Elisabeth Fournier,Pierre Gladieuxet al. Journées Ouvertes Biologie, Informatique, Mathématiques (JOBIM2025), Jul 2025, Bordeaux, France Poster de conférence hal-05209521v1
Discovering domestication mutations in cauliflower Mathis Pochon,Alexis Mergez,Fabrice Legeai,Jeremy Lucas,Cyril Falentinet al. Journées scientifiques 2025 Agroécologie et Numérique, Jan 2025, Dijon, France. Poster de conférence cea-04932621v1
A characterization of piRNAs, their biogenesis and their targets in Spodoptera frugiperda (Lepidoptera, Noctuidae) Imène Seninet,Mélanie Gasser,Sylvie Gimenez,Fabrice Legeai,Bernard Duvicet al. The 12th International workshop on Molecular Biology and Genetics of the Lepidoptera, Jul 2025, Kolympari, Greece Poster de conférence hal-05374300v1
Identification of viral gene involved in genome replication of domesticated endogenous virus in parasitoid wasp Ange Lorenzi,Fabrice Legeai,Véronique Jouan,Pierre-Alain Girard,Michael R. Strandet al. Jacques Monod Conference on “Virus evolution: the mutualism-antagonism continuum of virus- virus interactions”, Oct 2024, Roscoff, France Poster de conférence hal-04873290v1
Establishment of pangenome graphs for the analysis and monitoring of fungal plant pathogen populations Nicolas Lapalu,Antoine Loth,Fabrice Legeai,Ludovic Duvaux,Elisabeth Fournieret al. ISCLB 2024 International Symposium on Cereal Leaf Blights, Jun 2024, Zürich, Switzerland. ⟨10.15454/1.5572369328961167E12⟩ Poster de conférence hal-04623680v1
BIPAA, Bioinformatics Platform for the Agroecosystems Arthropods. Stéphanie Robin,Fabrice Legeai,Anthony Bretaudeau JOBIM 2023 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2023, Plouzané (Brest Métropole), France. pp.1-1, 2023 Poster de conférence hal-04176786v1
AskoR, an R package for easy RNA-Seq data analysis. Susete Alves Carvalho,Kévin Gazengel,Anthony Bretaudeau,Stéphanie Robin,Stéphanie Davalet al. Journées Ouvertes en Biologie, Informatique et Mathématiques (Jobim), Jun 2023, Tours, France. pp.263, 2018, JOBIM2023. ⟨10.1080/02664763.2018.1454894⟩ Poster de conférence hal-04720296v1
AskoR, an R package for easy RNA-Seq data analysis illustrated by the analysis of plant/pathogen/microbiote interactions. Susete Alves Carvalho,Kévin Gazengel,Masanelli Sylvin,Anthony Bretaudeau,Stéphanie Robinet al. Journées Ouvertes en Biologie, Informatique et Mathématiques (Jobim), Jul 2022, Rennes, France Poster de conférence hal-04720279v1
BIPAA, Bioinformatics Platform for the Agroecosystems Arthropods. Stéphanie Robin,Anthony Bretaudeau,Fabrice Legeai The 11th international workshop on Molecular Biology and Genetics of the Lepidoptera, Aug 2022, Kolympari, Greece Poster de conférence hal-04176792v1
LRez: C++ API and toolkit for analyzing and managing Linked-Reads data Pierre Morisse,Claire Lemaitre,Fabrice Legeai JOBIM 2021 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2021, Paris, France. pp.1 Poster de conférence hal-03441917v1
MTG-Link: filling gaps in draft genome assemblies with linked read data Anne Guichard,Fabrice Legeai,Arthur Le Bars,Paul Jay,Mathieu Joronet al. JOBIM 2020 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jun 2020, Montpellier, France. Poster de conférence hal-03073966v1
MTG-Link: filling gaps in draft genome assemblies with linked read data Anne Guichard,Fabrice Legeai,Arthur Le Bars,Paul Jay,Mathieu Joronet al. Biodiversity Genomics 2020, Oct 2020, Online, France. Poster de conférence hal-03074227v1
Functional consequences of transposable elements on duplicated gene transcription and retention in polyploid Brassica species Julie Ferreira de Carvalho,Julien Boutte,Loeiz Maillet,Thomas Chaussepied,Sébastien Letortet al. International Conference on Polyploidy, Jun 2019, Ghent, Belgium Poster de conférence hal-03318194v1
Identification and functional characterization of ovarian and maternally-inherited miRNAs in medaka Stéphanie Gay,Jérôme Montfort,Fabrice Legeai,Thuy Thao Vi Nguyen,Thomas Desvigneset al. 7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. , pp.153-153, 2019 Poster de conférence hal-02282325v1
Reference guided genome assembly in metagenomic samples Cervin Guyomar,Wesley Delage,Fabrice Legeai,Christophe Mougel,Jean-Christophe Simonet al. RECOMB 2018 - 22nd International Conference on Research in Computational Molecular Biology, Apr 2018, Paris, France. pp.1 Poster de conférence hal-01934823v1
BIPAA, Bioinformatics Platform for the Agroecosystems Arthropods. Stéphanie Robin,Anthony Bretaudeau,Fabrice Legeai Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jul 2018, Marseille (FR), France Poster de conférence hal-04176797v1
Une nouvelle facette du génome de poule : les genes “longs non-codants Kévin Muret,Christophe Klopp,Valentin Wucher,Diane Esquerre,Fabrice Legeaiet al. 12. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Apr 2017, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 2017, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras Poster de conférence hal-01605848v1
Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches Cervin Guyomar,Fabrice Legeai,Christophe Mougel,Claire Lemaitre,Jean-Christophe Simon JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France Poster de conférence hal-01638884v1
Integration and query of biological datasets with Semantic Web technologies: AskOmics Aurélie Evrard,Charles Bettembourg,Mélanie Jubault,Olivier Dameron,Olivier Filangiet al. Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2016), Jun 2016, Lyon, France Poster de conférence hal-01391087v1
Comparative genomic analysis of Clubroot resistance in the Brassicaceae family Aurélie Evrard,Charles Bettembourg,Olivier Dameron,Olivier Filangi,Anthony Bretaudeauet al. Brassica2016, Oct 2016, Melbourne, Australia. Poster de conférence hal-01391707v1
Long-non coding RNAs repertoire in liver and adipose tissue in chicken Kévin Muret,Christophe Klopp,Valentin Wucher,Diane D. Esquerre,Fabrice Legeaiet al. XXIV International Plant & Animal Genome (Pag), Jan 2016, San Diego, United States. 2016 Poster de conférence hal-02799305v1
Improvement of the assembly of heterozygous genomes of non-model organisms Anaïs Gouin,Anthony Bretaudeau,Emmanuelle d'Alençon,Claire Lemaitre,Fabrice Legeai Genome Informatics, Oct 2015, Cold Spring Harbor Laboratory, United States. 2015 Poster de conférence hal-01231793v1
Improvement of the assembly of heterozygous genomes of non-model organisms, a case study of the genomes of two Spodoptera frugiperda host strains Anaïs Gouin,Anthony Bretaudeau,K Labadie,Jean-Marc Aury,Emmanuelle d'Alençonet al. Arthropod Genomics 2015, Jun 2015, Manhattan (Kansas), United States. 2015 Poster de conférence hal-01240443v1
How to Design a good RNA-Seq experiment in an interdisciplinary context? Julie Aubert,Christelle Hennequet-Antier,Cyprien Guerin,Delphine Labourdette,Anne de La Foyeet al. European conference on Computational Biology, Sep 2014, Strasbourg, France. , 2014 Poster de conférence hal-01462728v1
Identification and correction of genome mis-assemblies due to heterozygosity Anaïs Gouin,Anthony Bretaudeau,Claire Lemaitre,Fabrice Legeai European Conference on Computational Biology (ECCB), Sep 2014, Strasbourg, France. , ECCB 2014, 2014 Poster de conférence hal-01092959v1
A tale of genome, annotations, metabolism and phylogenomics: the pea aphid genome resources Fabrice Legeai,Stefano Colella,Jaime Huerta-Cepas,Jean-Pierre Gauthier,Augusto Vellozoet al. 10. Cold Spring Harbor Laboratory / Wellcome Trust conference on Genome Informatics, Sep 2010, Hinxton, United Kingdom. 1 p., 2010 Poster de conférence hal-01231276v1

Chapitre d'ouvrage (5)

Analyse des données RNA-seq (RNA-sequencing) Stéphanie Robin,Fabrice Legeai Principes des techniques de biologie moléculaire et génomique : 3e édition revue et augmentée, Quae, 2018, Savoir Faire, 978-2-7592-2389-3 Chapitre d'ouvrage hal-03318969v1
Assemblage de génomes Anthony Bretaudeau,Fabrice Legeai Principes des techniques de biologie moléculaire et génomique : 3e édition revue et augmentée, Quae, 2018, Savoir Faire, 978-2-7592-2389-3 Chapitre d'ouvrage hal-03319003v1
La programmation Fabrice Legeai Principes des techniques de biologie moléculaire et génomique : 3e édition revue et augmentée, Quae, 2018, Savoir Faire, 978-2-7592-2389-3 Chapitre d'ouvrage hal-03318975v1
Genomics of Phenotypic plastity in Aphids Jenn A. Brisson,Julie Jaquiéry,Fabrice Legeai,Gaël Le Trionnaire,Denis Tagu Henryk Czosnek; Murad Ghanim. Management of Insect Pests to Agriculture, Springer International Publishing, pp.65-96, 2016, 978-3-319-24049-7. ⟨10.1007/978-3-319-24049-7_3⟩ Chapitre d'ouvrage hal-01314988v1
Whole genome sequencing projects of the plant pathogenic fungi Botrytis Cinerea and Sclerotinia Sclerotiorum Sabine, Helma Fillinger,Joelle J. Amselem,Francois Artiguenave,Arnaud Billault,Mathias Choqueret al. Macromolecules and secondary metabolites of grapevine and wine : fruit development, biotic and abiotic stresses, mechanisms of plant defense responses, proteins, glycoproteins, polysaccharides, polyphenolics, aroma compounds and secondar, EDITIONS TEC ET DOC, 2007, 978-2-7430-0965-9 Chapitre d'ouvrage hal-02820038v1

Autre publication scientifique (2)

SfruDB: Spodoptera frugiperda genome assembly, version 6 Ki Woong Nam,Fabrice Legeai 2019 Autre publication scientifique hal-02154693v1
LepidoDB Information system Emmanuelle d'Alençon,Fabrice Legeai,Anthony Bretaudeau,Stéphanie Robin,Nicolas Negreet al. 2017 Autre publication scientifique hal-02154691v1

Pré-publication, Document de travail (14)

A roadmap for the adoption of pangenomics in agronomy Stéphanie Bocs,Camille Carrette,Johann Confais,Siegfried Dubois,Ludovic Duvauxet al. 2025 Pré-publication, Document de travail (preprint/prepublication) hal-05357866v2
Investigating the topological motifs of inversions in pangenome graphs Sandra Romain,Siegfried Dubois,Fabrice Legeai,Claire Lemaitre 2025 Pré-publication, Document de travail hal-05204329v1
A characterization of piARNs, their biogenesis and their targets in Spodoptera frugiperda (Lepidoptera, Noctuidae) Imène Seninet,Mélanie Gasser,Sylvie Gimenez,Fabrice Legeai,Karine Durandet al. 2025 Pré-publication, Document de travail hal-05374380v1
Untangling the contribution of adaptive versus non-adaptive processes in the evolution of reproductive isolation between Coenonympha butterflies Thibaut Capblancq,Camille Roux,Frédéric Boyer,Fabrice Legeai,Mathieu Joronet al. 2024 Pré-publication, Document de travail (preprint/prepublication) hal-04850079v1
Identification of a viral gene essential for the genome replication of a domesticated endogenous virus in ichneumonid parasitoid wasps Ange Lorenzi,Fabrice Legeai,Véronique Jouan,Pierre-Alain Girard,Michael R Strandet al. 2024 Pré-publication, Document de travail hal-04558930v1
A fi rst characterization of kinetochore proteins in theholocentric insect Spodoptera frugiperda Emmanuelle d'Alençon,Sylvie Gimenez,Magali Eychenne,Fabrice Legeai,Sally Gamble 2025 Pré-publication, Document de travail hal-04941032v1
MTG-Link: leveraging barcode information from linked-reads to assemble specific loci Anne Guichard,Fabrice Legeai,Denis Tagu,Claire Lemaitre 2022 Pré-publication, Document de travail (preprint/prepublication) hal-03886951v1
Spodoptera littoralis genome mining brings insights on the dynamic of expansion of gustatory receptors in polyphagous noctuidae Camille Meslin,Pauline Mainet,Nicolas Montagné,Stéphanie Robin,Fabrice Legeaiet al. 2021 Pré-publication, Document de travail hal-04706490v1
Chromosomal resolution reveals symbiotic virus colonization of parasitic wasp genomes Jérémy Gauthier,Hélène Boulain,Joke J.F.A. van Vugt,Lyam Baudry,Emma Persynet al. 2020 Pré-publication, Document de travail hal-03090838v1
Genomic balancing selection is key to the invasive success of the fall armyworm Sudeeptha Yainna,Wee Tek Tay,Estelle Fiteni,Fabrice Legeai,Anne-Laure Clamenset al. 2020 Pré-publication, Document de travail hal-02945606v1
Functional insights from the GC-poor genomes of two aphid parasitoids, &lt;em&gt;Aphidius ervi&lt;/em&gt; and &lt;em&gt;Lysiphlebus fabarum&lt;/em&gt; Alice B. Dennis,Gabriel I. Ballesteros,Stéphanie Robin,Lukas Schrader,Jens Bastet al. 2019 Pré-publication, Document de travail (preprint/prepublication) hal-02788571v1
Adaptation by copy number variation increases insecticide resistance in fall armyworms Ki Woong Nam,Sylvie Gimenez,Frederique Hilliou,Carlos A Blanco,Sabine Hännigeret al. 2019 Pré-publication, Document de travail hal-02945633v1
Conserved and specific genomic features of endogenous polydnaviruses revealed by whole genome sequencing of two ichneumonid wasps Fabrice Legeai,Bernardo F. Santos,Stéphanie Robin,Anthony Bretaudeau,Rebecca B. Dikowet al. 2019 Pré-publication, Document de travail (preprint/prepublication) hal-02788577v1
A clonally reproducing generalist aphid pest colonises diverse host plants by rapid transcriptional plasticity of duplicated gene clusters Thomas Mathers,Yazhou Chen,Gemy Kaithakottil,Fabrice Legeai,Sam Mugfordet al. 2020 Pré-publication, Document de travail (preprint/prepublication) hal-02936181v1

Rapport (2)

Rapport d'étape chantier entrepôt et annuaire institutionnels pour les données de la recherche Windpouire Esther Dzale Yeumo,Lydie Soler,Sophie Aubin,Christine Boizot-Szantaï,Patrice Bucheet al. [0] 2014, 18 p Rapport hal-02801608v1
bioperl : Bibliothèque perl pour la modélisation et le traitement de données issues de la biologie Fabrice Legeai [Technical Report] 2008 Rapport (rapport technique) inria-00331279v1

Logiciel (4)

Pan1c (Pangenome at chromosome level) Alexis Mergez,Martin Racoupeau,Christophe Klopp,Christine Gaspin,Fabrice Legeaiet al. 2024, ⟨swh:1:dir:c0488c055238c5436ecd16007b018041b52be37c;origin=https://hal.archives-ouvertes.fr/hal-05034842;visit=swh:1:snp:181d70393b5e0afaaeb079e5f3aea770378d1427;anchor=swh:1:rel:23b2f168566f279e7605b4db88d4a7c140f04985;path=/⟩ Logiciel hal-05034842v1
MTG-Link Anne Guichard,Claire Lemaitre,Fabrice Legeai 2022, ⟨swh:1:dir:0dca26b1d2e4596e2a8978d5c4f20839bd3619a1;origin=https://github.com/anne-gcd/MTG-Link;visit=swh:1:snp:cee99bddef6535a83bd6043c7526c764938727c6;anchor=swh:1:rev:af1c25ea7f041c389035d7bbaaa211b75b1c5305⟩ Logiciel hal-04823104v1
LEVIATHAN Pierre Morisse,Fabrice Legeai,Claire Lemaitre 2021, ⟨swh:1:dir:ffa82af8711e81be89e083cce35917f0b9127972;origin=https://github.com/morispi/LEVIATHAN;visit=swh:1:snp:cfc0266ff811384a7f1174ca453791f41632bb0f;anchor=swh:1:rev:4d36c8d7559789a1b099e5b36707f3dbdbe69547⟩ Logiciel hal-04823122v1
LRez Pierre Morisse,Claire Lemaitre,Fabrice Legeai 2021, ⟨swh:1:dir:67c160e419ec76ee9fd865d01d422a2cdab32878;origin=https://github.com/morispi/LRez;visit=swh:1:snp:cfc56b2267c8121b6f0617b3f00cfbd3b184dd3c;anchor=swh:1:rev:3dfa5435decf92ef3feddb7672d8de38d517f14a⟩ Logiciel hal-04823115v1