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Fadi Bittar



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Using Genomics to Decipher the Enigmatic Properties and Survival Adaptation of Candidate Phyla Radiation

Mohamad Maatouk , Jean-Marc Rolain , Fadi Bittar
Microorganisms, 2023, 11 (5), pp.1231. ⟨10.3390/microorganisms11051231⟩
Journal articles hal-04155452v1
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New Beta-lactamases in Candidate Phyla Radiation: Owning Pleiotropic Enzymes Is a Smart Paradigm for Microorganisms with a Reduced Genome

Mohamad Maatouk , Ahmad Ibrahim , Lucile Pinault , Nicholas Armstrong , Said Azza
International Journal of Molecular Sciences, 2022, 23 (10), pp.5446. ⟨10.3390/ijms23105446⟩
Journal articles hal-03754479v1

Emergence of Candida auris in intensive care units in Algeria

Hanane Zerrouki , Ahmad Ibrahim , Sid‐ahmed Rebiahi , Yamina Elhabiri , Djamel‐eddine Benhaddouche
Mycoses, 2022, 65 (7), pp.753-759. ⟨10.1111/myc.13470⟩
Journal articles hal-03754554v1

Candidate Phyla Radiation, an Underappreciated Division of the Human Microbiome, and Its Impact on Health and Disease

Sabrina Naud , Ahmad Ibrahim , Camille Valles , Mohamad Maatouk , Fadi Bittar
Clinical Microbiology Reviews, 2022, ⟨10.1128/cmr.00140-21⟩
Journal articles hal-03754522v1
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Reverse Genomics: Design of Universal Epitope Sets to Isolate All Saccharibacteria Members from the Human Oral Cavity

Ahmad Ibrahim , Mohamad Maatouk , Didier Raoult , Fadi Bittar
Microorganisms, 2022, 10 (3), pp.602. ⟨10.3390/microorganisms10030602⟩
Journal articles hal-03663844v1

Adapted Protocol for Saccharibacteria Cocultivation: Two New Members Join the Club of Candidate Phyla Radiation

Ahmad Ibrahim , Mohamad Maatouk , Andriamiharimamy Rajaonison , Rita Zgheib , Gabriel Haddad
Microbiology Spectrum, 2021, 9 (3), ⟨10.1128/spectrum.01069-21⟩
Journal articles hal-03636811v1

Small and Equipped: the Rich Repertoire of Antibiotic Resistance Genes in Candidate Phyla Radiation Genomes

Mohamad Maatouk , Ahmad Ibrahim , Jean-Marc Rolain , Vicky Merhej , Fadi Bittar
mSystems, 2021, 6 (6), ⟨10.1128/mSystems.00898-21⟩
Journal articles hal-03636728v1
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Gorillibacterium timonense sp. nov., isolated from an obese patient

Sokhna Ndongo , Mamadou Beye , Noemie Labas , Fabrizio Di Pinto , Magali Richez
Archives of Microbiology, 2020, ⟨10.1007/s00203-020-01834-x⟩
Journal articles hal-02502401v1
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Comparison of Three Skin Sampling Methods and Two Media for Culturing Malassezia Yeast

Abdourahim Abdillah , Saber Khelaifia , Didier Raoult , Fadi Bittar , Stephane Ranque
Journal of Fungi, 2020, 6 (4), pp.350. ⟨10.3390/jof6040350⟩
Journal articles hal-03141598v1
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Identification of repositionable drugs with novel antimycotic activity by screening Prestwick Chemical Library against emerging invasive molds

Hanane Yousfi , Stéphane Ranque , Carole Cassagne , Jean-Marc Rolain , Fadi Bittar
Journal of Global Antimicrobial Resistance, 2020, ⟨10.1016/j.jgar.2020.01.002⟩
Journal articles hal-02464583v1

Repurposing of ribavirin as an adjunct therapy against invasive Candida strains: In vitro study

Hanane Yousfi , Carole Cassagne , Stephane Ranque , Jean-Marc Rolain , Fadi Bittar
Antimicrobial Agents and Chemotherapy, 2019, ⟨10.1128/AAC.00263-19⟩
Journal articles hal-02263610v1
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Noncontiguous finished genome sequence and description of Raoultibacter massiliensis gen. nov., sp. nov. and Raoultibacter timonensis sp. nov, two new bacterial species isolated from the human gut

Sory Ibrahima Traore , Melhem Bilen , Mamadou Beye , Awa Diop , Maxime Descartes Mbogning Fonkou
MicrobiologyOpen, 2019, 8 (6), pp.e00758. ⟨10.1002/mbo3.758⟩
Journal articles hal-02262558v1
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Draft genome and description of Cohnella massiliensis sp. nov., a new bacterial species isolated from the blood culture of a hemodialysis patient

Rita Abou Abdallah , Jacques Bou Khalil , Claudia Andrieu , Enora Tomei , Nicholas Armstrong
Archives of Microbiology, 2019, 201 (3), pp.305-312. ⟨10.1007/s00203-018-1612-1⟩
Journal articles hal-02202136v1

In vitro polymyxin activity against clinical multidrug-resistant fungi

Hanane Yousfi , Stéphane Ranque , Jean-Marc Rolain , Fadi Bittar
Antimicrobial Resistance and Infection Control, 2019, 8 (1), ⟨10.1186/s13756-019-0521-7⟩
Journal articles hal-02159425v1

Draft genome and description of Chryseobacterium phocaeense sp. nov.: a new bacterial species isolated from the sputum of a cystic fibrosis patient

Rita Abou Abdallah , Liliane Okdah , Jacques Bou Khalil , Hussein Anani , Pierre-Edouard Fournier
Archives of Microbiology, 2019, 1, ⟨10.1007/s00203-019-01704-1⟩
Journal articles hal-02263553v1
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Blastocystis Colonization Is Associated with Increased Diversity and Altered Gut Bacterial Communities in Healthy Malian Children

Aly Kodio , Drissa Coulibaly , Abdoulaye Kassoum Koné , Salimata Konate , Safiatou Doumbo
Microorganisms, 2019, 7 (12), pp.649. ⟨10.3390/microorganisms7120649⟩
Journal articles hal-02454474v1

Phoenicibacter congonensis gen. nov., sp. nov., a new genus isolated from the human gut and its description using a taxonogenomic approach

Melhem Bilen , Maxime Descartes Mbogning Fonkou , Aurélia Caputo , Thi-Thien Nguyen , Fabrizio Di Pinto
Antonie van Leeuwenhoek, 2019, 112 (5), pp.775-784. ⟨10.1007/s10482-018-01211-1⟩
Journal articles hal-02263646v1
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Taxonogenomics description of Parabacteroides timonensis sp. nov. isolated from a human stool sample

Melhem Bilen , Maxime Descartes Mbogning Fonkou , Saber Khelaifia , Enora Tomei , Frederic Cadoret
MicrobiologyOpen, 2018, pp.e00702. ⟨10.1002/mbo3.702⟩
Journal articles hal-02006029v1

Evaluation of two DNA extraction methods for the PCR-based detection of eukaryotic enteric pathogens in fecal samples

Estelle Menu , Charles Mary , Isabelle Toga , Didier Raoult , Stéphane Ranque
BMC Research Notes, 2018, 11 (1), ⟨10.1186/s13104-018-3300-2⟩
Journal articles hal-02006222v1
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Bacillus kwashiorkori sp nov., a new bacterial species isolated from a malnourished child using culturomics

El Hadji Seck , Mamadou Beye , Sory Ibrahima Traore , Saber Khelaifia , Caroline Michelle
MicrobiologyOpen, 2018, 7 (1), pp.e00535. ⟨10.1002/mbo3.535⟩
Journal articles hal-01780644v1
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Metabarcoding analysis of eukaryotic microbiota in the gut of HIV-infected patients

Ibrahim Hamad , Rita Abou Abdallah , Isabelle Ravaux , Saadia Mokhtari , Herve Tissot-Dupont
PLoS ONE, 2018, 13 (1), ⟨10.1371/journal.pone.0191913⟩
Journal articles hal-01765832v1
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Draft Genome and Description of Eisenbergiella massiliensis Strain AT11(T): A New Species Isolated from Human Feces After Bariatric Surgery

Amadou H. Togo , Awa Diop , Matthieu Million , Marie M. Maraninchi , Jean-Christophe J.-C. Lagier
Current Microbiology, 2018, 75 (10), pp.1274-1281. ⟨10.1007/s00284-018-1520-2⟩
Journal articles hal-01910318v1
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Characterization of a New Ezakiella Isolated from the Human Vagina: Genome Sequence and Description of Ezakiella massiliensis sp nov.

Khoudia Diop , Claudia Andrieu , Caroline Michelle , Nicholas Armstrong , Fadi Bittar
Current Microbiology, 2018, 75 (4), pp.456-463. ⟨10.1007/s00284-017-1402-z⟩
Journal articles hal-01780663v1
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First Draft Genome Sequences of Two Bartonella tribocorum Strains from Laos and Cambodia

Linda Hadjadj , Tawisa Jiyipong , Fadi Bittar , Serge Morand , Jean-Marc Rolain
Genome Announcements, 2018, 6 (2), ⟨10.1128/genomeA.01435-17⟩
Journal articles hal-02006202v1

Description of Chryseobacterium timonianum sp nov., isolated from a patient with pneumonia

Rita Abou Abdallah , Teresa Cimmino , Sophie Baron , Frederic Cadoret , Caroline Michelle
Antonie van Leeuwenhoek, 2017, 110 (9), pp.1121-1132. ⟨10.1007/s10482-017-0885-8⟩
Journal articles hal-01730980v1
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Repertoire of human gut microbes

Perrine Hugon , Jean-Christophe J.-C. Lagier , Philippe Colson , Fadi Bittar , Didier Raoult
Microbial Pathogenesis, 2017, 106 (103-112), ⟨10.1016/j.micpath.2016.06.020⟩
Journal articles hal-01478556v1
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Culturomics and Amplicon-based Metagenomic Approaches for the Study of Fungal Population in Human Gut Microbiota

Ibrahim Hamad , Stephane Ranque , Esam I. Azhar , Muhammad Yasir , Asif A. Jiman-Fatani
Scientific Reports, 2017, 7 (1), pp.16788. ⟨10.1038/s41598-017-17132-4⟩
Journal articles hal-01729796v1

Virtual special section `new challenges in antifungal therapy'

Stephane Ranque , Fadi Bittar
International Journal of Antimicrobial Agents, 2017, 50 (6), pp.699. ⟨10.1016/j.ijantimicag.2017.10.005⟩
Journal articles hal-01729790v1
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Molecular survey of Dirofilaria immitis and Dirofilaria repens by new real-time TaqMan® PCR assay in dogs and mosquitoes (Diptera: Culicidae) in Corsica (France)

Djamel Tahir , Fadi Bittar , Hélène Barré-Cardi , Doudou Sow , Mustapha Dahmani
Veterinary Parasitology, 2017, 235, pp.1-7. ⟨10.1016/j.vetpar.2017.01.002⟩
Journal articles hal-01478585v1

Many More Microbes in Humans: Enlarging the Microbiome Repertoire

Jean-Christophe J.-C. Lagier , Michel Drancourt , Remi Charrel , Fadi Bittar , Bernard La Scola
Clinical Infectious Diseases, 2017, 65 (1), pp.S20-S29. ⟨10.1093/cid/cix404⟩
Journal articles hal-01730977v1

Performance of Real-Time Polymerase Chain Reaction Assays for the Detection of 20 Gastrointestinal Parasites in Clinical Samples from Senegal

Doudou Sow , Philippe Parola , Khadime Sylla , Magatte Ndiaye , Pascal Delaunay
American Journal of Tropical Medicine and Hygiene, 2017, 97 (1), pp.173-182. ⟨10.4269/ajtmh.16-0781⟩
Journal articles hal-01774347v1
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Hugonella massiliensis gen. nov., sp nov., genome sequence, and description of a new strictly anaerobic bacterium isolated from the human gut

Ziena Elsawi , Amadou Hamidou Togo , Mamadou Beye , Gregory Dubourg , Claudia Andrieu
MicrobiologyOpen, 2017, 6 (4), ⟨10.1002/mbo3.458⟩
Journal articles hal-01774691v1

‘Clostridium massiliodielmoense’, a new species isolated from the human gut microbiota

Maryam Tidjani Alou , Cheikh Sokhna , Fadi Bittar , Saber Khelaifia , Pierre-Edouard Fournier
New Microbes and New Infections, 2016, 13, pp.27 - 28. ⟨10.1016/j.nmni.2016.05.014⟩
Journal articles hal-01478544v1
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Evaluation of a new extraction protocol for yeast identification by mass spectrometry

Frédérique Gouriet , Farida Ghiab , Carine Couderc , Fadi Bittar , Hervé Tissot Dupont
Journal of Microbiological Methods, 2016, 129, pp.61-65. ⟨10.1016/j.mimet.2016.08.001⟩
Journal articles hal-01478536v1

Non contiguous-finished genome sequence and description of Microbacterium gorillae sp. nov.

Linda Hadjadj , Jaishriram Rathored , Mamadou Bhoye Keita , Caroline Michelle , Anthony Levasseur
Standards in Genomic Sciences, 2016, 11 (1), ⟨10.1186/s40793-016-0152-z⟩
Journal articles hal-01478559v1

Marseillibacter massiliensis gen. nov., sp. nov., a new bacterial genus isolated from the human gut.

S Ndongo , Grégory Dubourg , Fadi Bittar , Cheikh Sokhna , Pierre-Edouard Fournier
New Microbes and New Infections, 2016, 16, pp.30-31. ⟨10.1016/j.nmni.2016.12.006⟩
Journal articles hal-01474968v1

Noncontiguous finished genome sequence and description of Fusobacterium massiliense sp. nov. isolated from human duodenum.

M Mailhe , Davide Ricaboni , V. Vitton , A. Benezech , Grégory Dubourg
New Microbes and New Infections, 2016, 16, pp.3-12. ⟨10.1016/j.nmni.2016.12.003⟩
Journal articles hal-01475451v1

Culture of previously uncultured members of the human gut microbiota by culturomics

Jean-Christophe J.-C. Lagier , Saber Khelaifia , Maryam Tidjani Alou , Sokhna Ndongo , Niokhor Dione
Nature Microbiology, 2016, 1 (12), ⟨10.1038/NMICROBIOL.2016.203⟩
Journal articles hal-01453324v1
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Anaerococcus rubiinfantis sp nov., isolated from the gut microbiota of a Senegalese infant with severe acute malnutrition

Maryam Tidjani Alou , Saber Khelaifia , Caroline Michelle , Claudia Andrieu , Nicholas Armstrong
Anaerobe, 2016, 40, pp.85-94. ⟨10.1016/j.anaerobe.2016.06.007⟩
Journal articles hal-01455591v1

Wild Gorillas as a Potential Reservoir of Leishmania major

Ibrahim Hamad , Claire-Lise Forestier , Martine Peeters , Eric Delaporte , Didier Raoult
Journal of Infectious Diseases, 2015, 211 (2), pp.267 - 273. ⟨10.1093/infdis/jiu380⟩
Journal articles hal-01478638v1

Reply to Bastien et al.

Ibrahim Hamad , Claire-Lise Forestier , Gilbert Greub , Katia Jaton , Didier Raoult
Journal of Infectious Diseases, 2015, 212 (3), pp.506 - 508. ⟨10.1093/infdis/jiv130⟩
Journal articles hal-01478605v1
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Mansonella, including a Potential New Species, as Common Parasites in Children in Gabon

Gaël Mourembou , Florence Fenollar , Jean Bernard Lekana-Douki , Angelique Ndjoyi Mbiguino , Sydney Maghendji Nzondo
PLoS Neglected Tropical Diseases, 2015, 9 (10), pp.e0004155. ⟨10.1371/journal.pntd.0004155⟩
Journal articles hal-01478563v1

Non contiguous-finished genome sequence and description of Bacillus jeddahensis sp. nov.

Fadi Bittar , Fehmida Bibi , Dhamodharan Ramasamy , Jean-Christophe J.-C. Lagier , Esam I. Azhar
Standards in Genomic Sciences, 2015, 10 (1), ⟨10.1186/s40793-015-0024-y⟩
Journal articles hal-01478581v1
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Gorilla gorilla gorilla gut: a potential reservoir of pathogenic bacteria as revealed using culturomics and molecular tools

Fadi Bittar , Mamadou B. Keita , Jean-Christophe J.-C. Lagier , Martine Peeters , Eric Delaporte
Scientific Reports, 2014, 4 (7174 ), ⟨10.1038/srep07174⟩
Journal articles hal-01241992v1
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Non-contiguous finished genome sequence and description of Paenibacillus gorillae sp. nov.

Mamadou Bhoye Keita , Roshan Padhmananabhan , Aurélia Caputo , Catherine Robert , Eric Delaporte
Standards in Genomic Sciences, 2014, 9 (3), pp.1031 - 1045. ⟨10.4056/sigs.5189179⟩
Journal articles hal-01478628v1
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Looking in apes as a source of human pathogens

Mamadou B. Keita , Ibrahim Hamad , Fadi Bittar
Microbial Pathogenesis, 2014, 77, pp.149-154. ⟨10.1016/j.micpath.2014.09.003⟩
Journal articles hal-01478622v1
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Pathogenic Eukaryotes in Gut Microbiota of Western Lowland Gorillas as Revealed by Molecular Survey

Ibrahim Hamad , Mamadou B. Keita , Martine Peeters , Eric Delaporte , Didier Raoult
Scientific Reports, 2014, 4, ⟨10.1038/srep06417⟩
Journal articles hal-01478617v1
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Non-contiguous finished genome sequence and description of Gorillibacterium massiliense gen. nov, sp. nov., a new member of the family Paenibacillaceae

Mamadou Bhoye Keita , Roshan Padhmanabhan , Aurélia Caputo , Catherine Robert , Eric Delaporte
Standards in Genomic Sciences, 2014, 9 (3), pp.807 - 820. ⟨10.4056/sigs.5199182⟩
Journal articles hal-01478632v1
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Detection of Termites and Other Insects Consumed by African Great Apes using Molecular Fecal Analysis

Ibrahim Hamad , Eric Delaporte , Didier Raoult , Fadi Bittar
Scientific Reports, 2014, 4, ⟨10.1038/srep04478⟩
Journal articles hal-01478646v1

Non-contiguous finished genome sequence and description of Bacillus massiliogorillae sp. nov.

Mamadou Bhoye Keita , Seydina M. Diene , Catherine Robert , Didier Raoult , Pierre-Edouard Fournier
Standards in Genomic Sciences, 2013, 9 (1), pp.93 - 105. ⟨10.4056/sigs.4388124⟩
Journal articles hal-01478647v1
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Phenotypic and genotypic properties of Microbacterium yannicii, a recently described multidrug resistant bacterium isolated from a lung transplanted patient with cystic fibrosis in France

Poonam Sharma , Seydina M Diene , Sandrine Thibeaut , Fadi Bittar , Véronique Roux
BMC Microbiology, 2013, 13 (1), ⟨10.1186/1471-2180-13-97⟩
Journal articles hal-01478651v1
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Molecular Detection of Eukaryotes in a Single Human Stool Sample from Senegal

Ibrahim Hamad , Cheikh Sokhna , Didier Raoult , Fadi Bittar
PLoS ONE, 2012, 7 (7), ⟨10.1371/journal.pone.0040888⟩
Journal articles hal-01478657v1
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Molecular Detection of Microorganisms in Distal Airways of Patients Undergoing Lung Cancer Surgery

Xavier Benoit d'Journo , Fadi Bittar , Delphine Trousse , Francoise Gaillat , Christophe Doddoli
Annals of Thoracic Surgery, 2012, 93 (2), pp.413-422. ⟨10.1016/j.athoracsur.2011.09.049⟩
Journal articles hal-01478660v1

Outbreak of Corynebacterium pseudodiphtheriticum Infection in Cystic Fibrosis Patients, France

Fadi Bittar , Carole Cassagne , Emmanuelle Bosdure , Nathalie Stremler , Jean-Christophe Dubus
Emerging Infectious Diseases, 2010, 16 (8), pp.1231 - 1236. ⟨10.3201/eid1608.100193⟩
Journal articles hal-01478672v1

Nocardia farcinica lung infection in a patient with cystic fibrosis: a case report

Fadi Bittar , Nathalie Stremler , Jean-Pierre Audié , Jean-Christophe Dubus , Jacques Sarles
Journal of Medical Case Reports, 2010, 4 (1), ⟨10.1186/1752-1947-4-84⟩
Journal articles hal-01478680v1

Genomic analysis of an emerging multiresistant Staphylococcus aureus strain rapidly spreading in cystic fibrosis patients revealed the presence of an antibiotic inducible bacteriophage

Jean-Marc Rolain , Patrice Francois , David Hernandez , Fadi Bittar , Herve Richet
Biology Direct, 2009, 4 (1), ⟨10.1186/1745-6150-4-1⟩
Journal articles hal-01478692v1
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MALDI-TOF-MS for rapid detection of staphylococcal Panton–Valentine leukocidin

Fadi Bittar , Zoulikha Ouchenane , Farida Smati , Didier Raoult , Jean-Marc Rolain
International Journal of Antimicrobial Agents, 2009, 34 (5), pp.467. ⟨10.1016/j.ijantimicag.2009.03.017⟩
Journal articles hal-00556340v1

Inquilinus limosus and Cystic Fibrosis

Fadi Bittar , Anne Leydier , Emmanuelle Bosdure , Alexandre Toro , Martine Reynaud-Gaubert
Emerging Infectious Diseases, 2008, 14 (6), pp.993 - 995. ⟨10.3201/eid1406.071355⟩
Journal articles hal-01478698v1

First isolation of two colistin-resistant emerging pathogens, Brevundimonas diminuta and Ochrobactrum anthropi, in a woman with cystic fibrosis: a case report

Magalie Menuet , Fadi Bittar , Nathalie Stremler , Jean-Christophe Dubus , Jacques Sarles
Journal of Medical Case Reports, 2008, 2 (1), ⟨10.1186/1752-1947-2-373⟩
Journal articles hal-01478694v1
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Molecular Detection of Multiple Emerging Pathogens in Sputa from Cystic Fibrosis Patients

Fadi Bittar , Hervé Richet , Jean-Christophe Dubus , Martine Reynaud-Gaubert , Nathalie Stremler
PLoS ONE, 2008, 3 (8), ⟨10.1371/journal.pone.0002908⟩
Journal articles hal-01477648v1

Acetobacter indonesiensis Pneumonia after Lung Transplant

Fadi Bittar , Martine Reynaud-Gaubert , Pascal Thomas , Stéphanie Boniface , Didier Raoult
Emerging Infectious Diseases, 2008, 14 (6), pp.997 - 998. ⟨10.3201/eid1406.071236⟩
Journal articles hal-01478697v1