Florence Débarre Directrice de Recherche, CNRS

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Publications

Article dans une revue (37)

Recently reported SARS-CoV-2 genomes suggested to be intermediate between the two early main lineages are instead likely derived Jonathan E Pekar,Niema Moshiri,Philippe Lemey,Alexander Crits-Christoph,Florence Débarreet al. Virus Evolution, 2025, 11 (1), pp.veaf008. ⟨10.1093/ve/veaf008⟩ Article dans une revue hal-05238665v1
The Spatial Spread and the Persistence of Gene Drives Are Affected by Demographic Feedbacks, Density Dependence and Allee Effects Léna Kläy,Léo Girardin,Vincent Calvez,Florence Débarre Molecular Ecology, 2025, 34 (16), pp.e70028. ⟨10.1111/mec.70028⟩ Article dans une revue hal-05238661v1
Theories of the origin of SARS-CoV-2 in the light of its continuing evolution Florence Débarre,Zach Hensel Comptes Rendus. Biologies, 2025, 348 (G1), pp.189-209. ⟨10.5802/crbiol.183⟩ Article dans une revue (article de synthèse) hal-05269180v1
Correspondence regarding “Geospatial analysis of open-source intelligence data to early detect laboratory-acquired infections, using the 2019 brucellosis laboratory leak in China as a case study” Georgios Pappas,Florence Débarre Infection, In press, ⟨10.1007/s15010-025-02675-w⟩ Article dans une revue hal-05341876v1
A Critical Reexamination of Recovered SARS-CoV-2 Sequencing Data Florence Débarre,Zach Hensel Molecular Biology and Evolution, 2025, 42 (6), pp.msaf109. ⟨10.1093/molbev/msaf109⟩ Article dans une revue hal-05232660v1
What we can and cannot learn from SARS-CoV-2 and animals in metagenomic samples from the Huanan market Florence Débarre Virus Evolution, 2024, 10 (1), pp.1-7. ⟨10.1093/ve/vead077⟩ Article dans une revue hal-04753095v1
Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic Alexander Crits-Christoph,Joshua I Levy,Jonathan E Pekar,Stephen A Goldstein,Reema Singhet al. Cell, 2024, 187 (19), pp.5468-5482.e11. ⟨10.1016/j.cell.2024.08.010⟩ Article dans une revue hal-05238565v1
Using early detection data to estimate the date of emergence of an epidemic outbreak Sofía Jijón,Peter Czuppon,François Blanquart,Florence Débarre PLoS Computational Biology, 2024, 20 (3), pp.e1011934. ⟨10.1371/journal.pcbi.1011934⟩ Article dans une revue hal-04660551v1
Modelling daisy quorum drive: A short-term bridge across engineered fitness valleys Frederik J H de Haas,Léna Kläy,Florence Débarre,Sarah P Otto PLoS Genetics, 2024, 20 (5), pp.e1011262. ⟨10.1371/journal.pgen.1011262⟩ Article dans une revue hal-04646014v1
Temporal, age, and geographical variation in vaccine efficacy against infection by the Delta and Omicron variants in the community in France, December 2021 to March 2022 François Blanquart,Clémence Abad,Joevin Ambroise,Mathieu Bernard,Florence Débarreet al. International Journal of Infectious Diseases, 2023, 133, pp.89-96. ⟨10.1016/j.ijid.2023.04.410⟩ Article dans une revue hal-04275605v1
Pulled, pushed or failed: the demographic impact of a gene drive can change the nature of its spatial spread Léna Kläy,Léo Girardin,Vincent Calvez,Florence Débarre Journal of Mathematical Biology, 2023, 87, pp.30. ⟨10.1007/s00285-023-01926-4⟩ Article dans une revue hal-03830886v2
A stochastic analysis of the interplay between antibiotic dose, mode of action, and bacterial competition in the evolution of antibiotic resistance Peter Czuppon,Troy Day,Florence Débarre,François Blanquart PLoS Computational Biology, 2023, 19 (8), pp.e1011364. ⟨10.1371/journal.pcbi.1011364⟩ Article dans une revue hal-04275613v1
The French Covid-19 vaccination policy did not solve vaccination inequities: a nationwide study on 64.5 million people Florence Débarre,Emmanuel Lecoeur,Lucie Guimier,Marie Jauffret-Roustide,Anne-Sophie Jannot European Journal of Public Health, 2022, 32 (5), pp.825-830. ⟨10.1093/eurpub/ckac125⟩ Article dans une revue hal-03508547v2
Selection for infectivity profiles in slow and fast epidemics, and the rise of SARS-CoV-2 variants François Blanquart,Nathanaël Hozé,Benjamin John Cowling,Florence Débarre,Simon Cauchemez eLife, 2022, 11, pp.e75791. ⟨10.7554/eLife.75791⟩ Article dans une revue hal-03835687v1
SARS-CoV-2 viral dynamics in infections with Alpha and Beta variants of concern in the French community Gina Cosentino,Mathieu Bernard,Joëvin Ambroise,Jean-Marc Giannoli,Jérémie Guedjet al. Journal of Infection, 2022, 84 (1), pp.94-118. ⟨10.1016/j.jinf.2021.07.031⟩ Article dans une revue hal-03835698v1
The stochastic dynamics of early epidemics: probability of establishment, initial growth rate, and infection cluster size at first detection Peter Czuppon,Emmanuel Schertzer,François Blanquart,Florence Débarre Journal of the Royal Society Interface, 2021, 18 (184), pp.20210575. ⟨10.1098/rsif.2021.0575⟩ Article dans une revue hal-03439370v1
Characterisation of vaccine breakthrough infections of SARS-CoV-2 Delta and Alpha variants and within-host viral load dynamics in the community, France, June to July 2021 François Blanquart,Clémence Abad,Joëvin Ambroise,Mathieu Bernard,Gina Cosentinoet al. Eurosurveillance, 2021, 26 (37), pp.2100824. ⟨10.2807/1560-7917.ES.2021.26.37.2100824⟩ Article dans une revue hal-03370775v1
Success of prophylactic antiviral therapy for SARS-CoV-2: predicted critical efficacies and impact of different drug-specific mechanisms of action Peter Czuppon,Florence Débarre,Antonio Gonçalves,Olivier Tenaillon,Alan S Perelsonet al. PLoS Computational Biology, 2021, 17 (3), pp.e1008752. ⟨10.1371/journal.pcbi.1008752⟩ Article dans une revue hal-03003001v3
The Effect of Habitat Choice on Evolutionary Rescue in Subdivided Populations Peter Czuppon,François Blanquart,Hildegard Uecker,Florence Débarre The American Naturalist, 2021, 197 (6), pp.625-643. ⟨10.1086/714034⟩ Article dans une revue hal-03439344v1
Demographic feedbacks can hamper the spatial spread of a gene drive Léo Girardin,Florence Débarre Journal of Mathematical Biology, 2021, 83, pp.67. ⟨10.1007/s00285-021-01702-2⟩ Article dans une revue hal-03121911v2
MetaPopGen 2.0: a multilocus genetic simulator to model populations of large size Marco Andrello,Christelle Noirot,Florence Débarre,Stéphanie Manel Molecular Ecology Resources, 2020, 21 (2), pp.596-608. ⟨10.1111/1755‐0998.13270⟩ Article dans une revue hal-03002459v1
Can a Population Targeted by a CRISPR-Based Homing Gene Drive Be Rescued? Nicolas O. Rode,Virginie Courtier-Orgogozo,Florence Débarre G3, 2020, 10 (9), pp.3403-3415. ⟨10.1534/g3.120.401484⟩ Article dans une revue hal-02978494v1
Factors favouring the evolution of multidrug resistance in bacteria Eliott Jacopin,Sonja Lehtinen,Florence Débarre,François Blanquart Journal of the Royal Society Interface, 2020, 17 (168), ⟨10.1098/rsif.2020.0105⟩ Article dans une revue hal-03002992v1
Imperfect Strategy Transmission Can Reverse the Role of Population Viscosity on the Evolution of Altruism Florence Débarre Dynamic Games and Applications, 2019, 10, pp.732-763. ⟨10.1007/s13235-019-00326-y⟩ Article dans une revue hal-02406568v1
The split-and-drift random graph, a null model for speciation François Bienvenu,Florence Débarre,Amaury Lambert Stochastic Processes and their Applications, 2019, 129 (6), pp.2010-2048. ⟨10.1016/j.spa.2018.06.009⟩ Article dans une revue hal-01533404v3
Population management using gene drive: molecular design, models of spread dynamics and assessment of ecological risks Nicolas O. Rode,Arnaud A Estoup,Denis Bourguet,Virginie Courtier-Orgogozo,Florence Débarre Conservation Genetics, 2019, 20 (4), pp.671-690. ⟨10.1007/s10592-019-01165-5⟩ Article dans une revue (article de synthèse) hal-02338278v1
Detecting the macroevolutionary signal of species interactions Luke J Harmon,Cecilia S Andreazzi,Florence Débarre,Jonathan Drury,Emma E Goldberget al. Journal of Evolutionary Biology, 2019, 32 (8), pp.769-782. ⟨10.1111/jeb.13477⟩ Article dans une revue hal-03002995v1
Catch me if you can: a spatial model for a brake-driven gene drive reversal Léo Girardin,Vincent Calvez,Florence Débarre Bulletin of Mathematical Biology, 2019, 81 (12), pp.5054-5088. ⟨10.1007/s11538-019-00668-z⟩ Article dans une revue hal-01954463v2
Gene Drives: Dynamics and Regulatory Matters—A Report from the Workshop “Evaluation of Spatial and Temporal Control of Gene Drives,” April 4–5, 2019, Vienna Bernd Giese,Johannes L Friess,Nicholas H Barton,Philipp W Messer,Florence Débarreet al. BioEssays, 2019, 10 (9), pp.1900151. ⟨10.1002/bies.201900151⟩ Article dans une revue hal-02321692v1
Environmentally Mediated Social Dilemmas Sylvie Estrela,Eric Libby,Jeremy van Cleve,Florence Débarre,Maxime Deforetet al. Trends in Ecology & Evolution, 2018, 34 (1), pp.6-18. ⟨10.1016/j.tree.2018.10.004⟩ Article dans une revue hal-01941198v1
Linking local adaptation with the evolution of sex differences Tim Connallon,Florence Débarre,Xiang-Yi Li Philosophical Transactions of the Royal Society B: Biological Sciences, 2018, 373 (1757), pp.20170414. ⟨10.1098/rstb.2017.0414⟩ Article dans une revue hal-02406588v1
Chaos and the (Un)Predictability of Evolution in a Changing Environment Artur Rego-Costa,Florence Débarre,Luis-Miguel Chevin Evolution - International Journal of Organic Evolution, 2018, 72 (2), pp.375--385. ⟨10.1111/evo.13407⟩ Article dans une revue hal-03985243v1
Gender equity at scientific events Florence Débarre,Nicolas O. Rode,L. V. Ugelvig Evolution Letters, 2018, 2 (3), pp.148-157. ⟨10.1002/evl3.49⟩ Article dans une revue hal-02622749v1
Fidelity of parent-offspring transmission and the evolution of social behavior in structured populations Florence Débarre Journal of Theoretical Biology, 2017, 420, pp.26 - 35. ⟨10.1016/j.jtbi.2017.02.027⟩ Article dans une revue hal-01484829v1
Evolution of dispersal in spatially and temporally variable environments: the importance of life cycles François Massol,Florence Débarre Evolution - International Journal of Organic Evolution, 2015, 69 (7), pp.1925-1937. ⟨10.1111/evo.12699⟩ Article dans une revue istex hal-01165583v1
Host resistance, population structure and the long-term persistence of bubonic plague: contributions of a modelling approach in the Malagasy focus Fanny Gascuel,Marc Choisy,Jean-Marc J.-M. Duplantier,Florence Débarre,Carine Brouat PLoS Computational Biology, 2013, 9 (5), ⟨10.1371/journal.pcbi.1003039⟩ Article dans une revue hal-02646316v1
Evolution of host life-history traits in a spatially structured host-parasite system Florence Débarre,Sébastien Lion,Minus Van Baalen,Sylvain Gandon The American Naturalist, 2012, 179 (1), pp.52-63. ⟨10.1086/663199⟩ Article dans une revue hal-02122398v1

Pré-publication, Document de travail (7)

A critical reexamination of recovered SARS-CoV-2 sequencing data Florence Débarre,Z. Hensel 2024 Pré-publication, Document de travail hal-04753118v1
Genetic evidence of susceptible wildlife in SARS-CoV-2 positive samples at the Huanan Wholesale Seafood Market, Wuhan: Analysis and interpretation of data released by the Chinese Center for Disease Control Alex Crits-Christoph,Karthik Gangavarapu,Jonathan Pekar,Niema Moshiri,Reema Singhet al. 2023 Pré-publication, Document de travail hal-04275674v1
Using early detection data to estimate the date of emergence of an epidemic outbreak S. Jijón,P. Czuppon,F. Blanquart,Florence Débarre 2023 Pré-publication, Document de travail hal-04275665v1
Spread of the Delta variant, vaccine effectiveness against PCR-detected infections and within-host viral load dynamics in the community in France François Blanquart,Clémence Abad,Joevin Ambroise,Mathieu Bernard,Gina Cosentinoet al. 2021 Pré-publication, Document de travail hal-03289443v1
SARS-CoV-2 viral dynamics in infections with variants of concern in the French community Gina Cosentino,Mathieu Bernard,Joëvin Ambroise,Jean-Marc Giannoli,Jérémie Guedjet al. 2021 Pré-publication, Document de travail hal-03217231v1
Characterization of vaccine-breakthrough infections of SARS-CoV-2 Delta and Alpha variants and within-host viral load dynamics in the community in France François Blanquart,Clémence Abad,Joevin Ambroise,Mathieu Bernard,Gina Cosentinoet al. 2021 Pré-publication, Document de travail hal-03318483v2
The effect of habitat choice on evolutionary rescue in subdivided populations Peter Czuppon,François Blanquart,Hildegard Uecker,Florence Débarre 2020 Pré-publication, Document de travail hal-03002998v1

Article de blog scientifique (1)

Le SARS-CoV-2 : une expérience inédite de surveillance génomique mondiale Hélène Touzet,Mikaël Salson,Claire Lemaitre,Florence Débarre 2023 Article de blog scientifique hal-04155812v1

Autre publication scientifique (2)

Editorial Expression of Concern Daniel I. Bolnick,Jeremy W. Fox,Florence Débarre,Emma I. Dietrich,Steve M. Phelpset al. 2021, pp.313--316. ⟨10.1086/714867⟩ Autre publication scientifique hal-03992181v1
Fisher to the rescue François Blanquart,Florence Débarre 2019, pp.100072. ⟨10.24072/pci.evolbiol.100072⟩ Autre publication scientifique hal-02550744v1

Communication dans un congrès (1)

Can evolutionary biology help better predict the risks associated with population control using gene drives? Nicolas O. Rode,Arnaud A Estoup,Denis Bourguet,V. Courtier-Orgogozo,Florence Débarre 2. Joint Congress on Evolutionary Biology (EVOLUTION 2018), Aug 2018, Montpellier, France Communication dans un congrès hal-02785305v1