Filipe Borges

Publications

Article dans une revue (24)

Pseudouridine guides germline small RNA transport and epigenetic inheritance Rowan P Herridge,Jakub Dolata,Valentina Migliori,Cristiane de Santis Alves,Filipe Borgeset al. Nature Structural and Molecular Biology, 2025, 32 (2), ⟨10.1038/s41594-024-01392-6⟩ Article dans une revue hal-04943311v1
Targeted suppression of siRNA biogenesis in Arabidopsis pollen promotes triploid seed viability Kannan Pachamuthu,Matthieu Simon,Filipe Borges Nature Communications, 2024, 15 (1), pp.4612. ⟨10.1038/s41467-024-48950-6⟩ Article dans une revue hal-04642232v1
Epigenetic control of transposons during plant reproduction: From meiosis to hybrid seeds Kannan Pachamuthu,Filipe Borges Current Opinion in Plant Biology, 2023, 75, pp.102419. ⟨10.1016/j.pbi.2023.102419⟩ Article dans une revue hal-04179221v1
Specificities and Dynamics of Transposable Elements in Land Plants Corinne Mhiri,Filipe Borges,Marie-Angèle Grandbastien Biology, 2022, 11 (4), pp.488. ⟨10.3390/biology11040488⟩ Article dans une revue hal-04179211v1
Bypassing reproductive barriers in hybrid seeds using chemically induced epimutagenesis Jonathan Huc,Katarzyna Dziasek,Kannan Pachamuthu,Tristan Woh,Claudia Köhleret al. The Plant cell, 2022, 34 (3), pp.989-1001. ⟨10.1093/plcell/koab284⟩ Article dans une revue hal-04179207v1
Male fertility in Arabidopsis requires active DNA demethylation of genes that control pollen tube function Souraya Khouider,Filipe Borges,Chantal Leblanc,Alexander Ungru,Arp Schnittgeret al. Nature Communications, 2021, 12 (1), ⟨10.1038/s41467-020-20606-1⟩ Article dans une revue hal-03113753v1
Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation Filipe Borges,Mark T.A. Donoghue,Chantal Leblanc,Emily Wear,Milos Tanurdžićet al. Current Biology, 2021, 31 (3), pp.591-600. ⟨10.1016/j.cub.2020.10.098⟩ Article dans une revue hal-03332098v1
DEFECTIVE EMBRYO AND MERISTEMS genes are required for cell division and gamete viability in Arabidopsis Chin Hong Lee,Nathaniel Hawker,Jonathan Peters,Thierry Lonhienne,Nial Gursansckyet al. PLoS Genetics, 2021, 17 (5), pp.e1009561. ⟨10.1371/journal.pgen.1009561⟩ Article dans une revue hal-03363693v1
Contrasting epigenetic control of transgenes and endogenous genes promotes post-transcriptional transgene silencing in Arabidopsis Nicolas Butel,Agnès Yu,Ivan Le Masson,Filipe Borges,Taline Elmayanet al. Nature Communications, 2021, 12 (1), pp.1-12. ⟨10.1038/s41467-021-22995-3⟩ Article dans une revue hal-03318287v1
Polymerase IV Plays a Crucial Role in Pollen Development in Capsella Zhenxing Wang,Nicolas Butel,Juan Santos-González,Filipe Borges,Jun Yiet al. The Plant cell, 2020, 32 (4), pp.950-966. ⟨10.1105/tpc.19.00938⟩ Article dans une revue hal-02935298v1
Selection and validation of reference genes for qPCR analysis of miRNAs and their targets during somatic embryogenesis in tamarillo (Solanum betaceum Cav.) Daniela Cordeiro,Miguel Rito,Filipe Borges,Jorge Canhoto,Sandra Correia Plant Cell, Tissue and Organ Culture, 2020, 143 (1), pp.109-120. ⟨10.1007/s11240-020-01901-7⟩ Article dans une revue hal-03157305v1
Transposon-derived small RNAs triggered by miR845 mediate genome dosage response in &lt;em&gt;Arabidopsis&lt;/em&gt; Filipe Borges,Jean-Sébastien Parent,Frédéric van Ex,Philip Wolff,German Martinezet al. Nature Genetics, 2018, 50 (2), pp.186-192. ⟨10.1038/s41588-017-0032-5⟩ Article dans une revue hal-02625249v1
Epigenetic activation of meiotic recombination near &lt;em&gt;Arabidopsis thaliana&lt;/em&gt; centromeres via loss of H3K9me2 and non-CG DNA methylation Charles J. Underwood,Kyuha Choi,Christophe Lambing,Xiaohui Zhao,Heïdi Serraet al. Genome Research, 2018, 28 (4), pp.519-531. ⟨10.1101/gr.227116.117⟩ Article dans une revue hal-02624267v1
The expanding world of small RNAs in plants Filipe Borges,Robert A. Martienssen Nature Reviews Molecular Cell Biology, 2015, 16 (12), pp.727-741. ⟨10.1038/nrm4085⟩ Article dans une revue hal-02641568v1
Transcriptional profiling of Arabidopsis root hairs and pollen defines an apical cell growth signature Jörg D. Becker,Seiji Takeda,Filipe Borges,Liam Dolan,José A. Feijó BMC Plant Biology, 2014, 14, pp.1-14. ⟨10.1186/s12870-014-0197-3⟩ Article dans une revue hal-02639633v1
miRNAs trigger widespread epigenetically activated siRNAs from transposons in &lt;em&gt;Arabidopsis&lt;/em&gt; Kate M. Creasey,Jixian Zhai,Filipe Borges,Frédéric van Ex,Michael Regulskiet al. Nature, 2014, 508 (7496), pp.411-415. ⟨10.1038/nature13069⟩ Article dans une revue hal-02638598v1
Establishing epigenetic variation during genome reprogramming Filipe Borges,Robert A. Martienssen RNA Biology, 2013, 10 (4), pp.490. ⟨10.4161/rna.24085⟩ Article dans une revue hal-02646292v1
Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA Joseph P. Calarco,Filipe Borges,Mark T. A. Donoghue,Frédéric van Ex,Pauline E. Jullienet al. Cell, 2012, 151 (1), pp.194-205. ⟨10.1016/j.cell.2012.09.001⟩ Article dans une revue hal-02652232v1
FACS-based purification of Arabidopsis microspores, sperm cells and vegetative nuclei Filipe Borges,Rui Gardner,Telma Lopes,Joseph P. Calarco,Leonor C. Boavidaet al. Plant Methods, 2012, 8 (1), pp.1-8. ⟨10.1186/1746-4811-8-44⟩ Article dans une revue hal-02649137v1
MicroRNA activity in the Arabidopsis male germline Filipe Borges,Patrícia A. Pereira,R. Keith Slotkin,Robert A. Martienssen,Jörg D. Becker Journal of Experimental Botany, 2011, 62 (5), pp.1611-1619. ⟨10.1093/jxb/erq452⟩ Article dans une revue hal-02652234v1
Glutamate receptor-like genes form Ca2+ channels in pollen tubes and are regulated by pistil D-serine Erwan Michard,Pedro T. Lima,Filipe Borges,Ana Catarina Silva,Maria Teresa Porteset al. Science, 2011, 332 (6028), pp.434-437. ⟨10.1126/science.1201101⟩ Article dans une revue hal-02649951v1
Whole genome analysis of gene expression reveals coordinated activation of signaling and metabolic pathways during pollen-pistil interactions in Arabidopsis Leonor C. Boavida,Filipe Borges,Jörg D. Becker,José A. Feijó Plant Physiology, 2011, 155 (4), pp.2066-2080. ⟨10.1104/pp.110.169813⟩ Article dans une revue hal-02646294v1
Epigenetic reprogramming and small RNA silencing of transposable elements in pollen R. Keith Slotkin,Matthew Vaughn,Filipe Borges,Milos Tanurdzic,Jörg D. Beckeret al. Cell, 2009, 136 (3), pp.461-472. ⟨10.1016/j.cell.2008.12.038⟩ Article dans une revue hal-02666128v1
Comparative transcriptomics of Arabidopsis sperm cells Filipe de Sousa Borges,Gabriela Gomes,Rui Gardner,Nuno Moreno,Sheila Mccormicket al. Plant Physiology, 2008, 148 (2), pp.1168. ⟨10.1104/pp.108.125229⟩ Article dans une revue hal-02660167v1

Pré-publication, Document de travail (2)

Targeted suppression of siRNA biogenesis in Arabidopsis pollen reveals distinct Pol IV activities in the sperm and vegetative cell lineages Kannan Pachamuthu,Matthieu Simon,Filipe Borges 2023 Pré-publication, Document de travail hal-04179205v1
Chemically-induced epimutagenesis allows bypassing reproductive barriers in hybrid seeds Jonathan Huc,Katarzyna Dziasek,Kannan Pachamuthu,Tristan Woh,Claudia Köhleret al. 2021 Pré-publication, Document de travail hal-03295512v2