Florence Hommais

Publications

Article dans une revue (23)

Quantitative spatial analysis of bacterial transcriptome and chromosome structural data with GRATIOSA: application to twin-supercoiled domain distribution Maïwenn Pineau,Raphaël Forquet,Sylvie Reverchon,William Nasser,Florence Hommaiset al. Nucleic Acids Research, 2025, 53, ⟨10.1093/nar/gkaf452⟩ Article dans une revue hal-05098795v1
What is a supercoiling-sensitive gene? Insights from topoisomerase I inhibition in the Gram-negative bacterium Dickeya dadantii Maïwenn Pineau,Shiny Martis Badiadka,Raphaël Forquet,Jessica Baude,Camille Villardet al. Nucleic Acids Research, 2022, 50 (16), pp.9149-9161. ⟨10.1093/nar/gkac679⟩ Article dans une revue hal-03774489v1
Mapping the Complex Transcriptional Landscape of the Phytopathogenic Bacterium Dickeya dadantii Raphaël Forquet,Xuejiao Jiang,William Nasser,Florence Hommais,Sylvie Reverchonet al. mBio, 2022, 13, ⟨10.1128/mbio.00524-22⟩ Article dans une revue hal-03715992v1
Agrobacterium fabrum C58 involved nitrate reductase NapA and antisense RNA NorR to denitrify Solène Lecomte,Xavier Nesme,Théophile Franzino,Camille Villard,Mariane Pivardet al. FEMS Microbiology Ecology, 2021, 97 (1), ⟨10.1093/femsec/fiaa233⟩ Article dans une revue hal-03238010v1
RNA Chaperones Hfq and ProQ Play a Key Role in the Virulence of the Plant Pathogenic Bacterium Dickeya dadantii Simon Leonard,Camille Villard,William Nasser,Sylvie Reverchon,Florence Hommais Frontiers in Microbiology, 2021, 12, pp.687484. ⟨10.3389/fmicb.2021.687484⟩ Article dans une revue hal-03336963v1
Quorum Sensing Regulation in Phytopathogenic Bacteria Julie Baltenneck,Sylvie Reverchon,Florence Hommais Microorganisms, 2021, 9 (2), pp.239. ⟨10.3390/microorganisms9020239⟩ Article dans une revue hal-03336957v1
Plasmid‐chromosome crosstalks Ludovic Vial,Florence Hommais Environmental Microbiology, 2020, 22 (2), pp.540-556. ⟨10.1111/1462-2920.14880⟩ Article dans une revue (article de synthèse) hal-02389634v1
The nucleoid-associated protein IHF acts as a ‘transcriptional domainin’ protein coordinating the bacterial virulence traits with global transcription Sylvie Reverchon,Sam Meyer,Raphaël Forquet,Florence Hommais,Georgi Muskhelishviliet al. Nucleic Acids Research, 2020, ⟨10.1093/nar/gkaa1227⟩ Article dans une revue hal-03091721v1
A novel plasmid‐transcribed regulatory sRNA, QfsR, controls chromosomal polycistronic gene expression in Agrobacterium fabrum Benjamin Diel,Magali Dequivre,Florence Wisniewski-Dyé,Ludovic Vial,Florence Hommais Environmental Microbiology, 2019, 21 (8), pp.3063-3075. ⟨10.1111/1462-2920.14704⟩ Article dans une revue hal-02161890v1
APERO: a genome-wide approach for identifying bacterial small RNAs from RNA-Seq data Simon Leonard,Sam Meyer,Stéphan Lacour,William Nasser,Florence Hommaiset al. Nucleic Acids Research, 2019, 47 (15), pp.1-12. ⟨10.1093/nar/gkz485⟩ Article dans une revue hal-02152104v1
Erratum to: Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans Sandrine Koechler,Jessica Cleiss-Arnold,Caroline Proux,Odile Sismeiro,Marie-Agnès Dillieset al. BMC Microbiology, 2017, 17 (1), pp.74. ⟨10.1186/s12866-017-0976-8⟩ Article dans une revue hal-02001351v1
Plant-phytopathogen interactions: bacterial responses to environmental and plant stimuli Simon Leonard,Florence Hommais,William Nasser,Sylvie Reverchon Environmental Microbiology, 2017, 19 (5), pp.1689 - 1716. ⟨10.1111/1462-2920.13611⟩ Article dans une revue hal-01759780v1
Global transcriptional response of Dickeya dadantii to environmental stimuli relevant to the plant infection X. Jiang,O. Zghidi-Abouzid,C. Oger-Desfeux,F. Hommais,N. Grelicheet al. Environmental Microbiology, 2016, 18 (11), pp.3651-3672 Article dans une revue hal-01997044v1
Coordinated Regulation of Species-Specific Hydroxycinnamic Acid Degradation and Siderophore Biosynthesis Pathways in Agrobacterium fabrum Jessica Baude,Ludovic Vial,Camille Villard,Tony Campillo,Céline Lavireet al. Applied and Environmental Microbiology, 2016, 82 (12), pp.3515-3524. ⟨10.1128/aem.00419-16⟩ Article dans une revue hal-01910930v1
Small RNA deep-sequencing analyses reveal a new regulator of virulence in Agrobacterium fabrum C58 Magali Dequivre,Benjamin Diel,Camille Villard,Odile Sismeiro,Maxime Durotet al. Molecular Plant-Microbe Interactions, 2015, 28 (5), pp.580-589. ⟨10.1094/MPMI-12-14-0380-FI⟩ Article dans une revue hal-01205620v1
Analysis of hydroxycinnamic acids degradation in Agrobacterium fabrum reveals a CoA-dependent, beta-oxidative deacetylation pathway Tony Campillo,Sébastien Renoud,Isabelle Kerzaon,Ludovic Vial,Jessica Baudeet al. Applied and Environmental Microbiology, 2014, 80 (11), pp.3341-3349. ⟨10.1128/AEM.00475-14⟩ Article dans une revue hal-01010603v1
Structural basis for selective GABA binding in bacterial pathogens S. Planamente,S. Mondy,Florence Hommais,A. Vigouroux,S. Moreraet al. Molecular Microbiology, 2012, 86 (5), pp.1085-99. ⟨10.1111/mmi.12043⟩ Article dans une revue hal-02001293v1
Genomic Species Are Ecological Species as Revealed by Comparative Genomics in Agrobacterium tumefaciens Florent Lassalle,Tony Campillo,Ludovic Vial,Jessica Baude,Denis Costechareyreet al. Genome Biology and Evolution, 2011, 3 (3), pp.762-781. ⟨10.1093/gbe/evr070⟩ Article dans une revue halsde-00723400v1
lpxC and yafS are the Most Suitable Internal Controls to Normalize Real Time RT-qPCR Expression in the Phytopathogenic Bacteria Dickeya dadantii Florence Hommais,Ouafa Zghidi-Abouzid,Christine Oger-Desfeux,Emilie Pineau,Frederique van Gijsegemet al. PLoS ONE, 2011, 6 (5), ⟨10.1371/journal.pone.0020269⟩ Article dans une revue hal-01190471v1
Structure, function, and evolution of the Thiomonas spp. genome. Florence Arsène-Ploetze,Sandrine Koechler,Marie Marchal,Jean-Yves Coppée,Michael Chandleret al. PLoS Genetics, 2010, 6 (2), pp.e1000859. ⟨10.1371/journal.pgen.1000859⟩ Article dans une revue hal-00463879v1
Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans Sandrine Koechler,Jessica Cleiss-Arnold,Caroline Proux,Odile Sismeiro,Marie-Agnès Dillieset al. BMC Microbiology, 2010, 10 (1), pp.53. ⟨10.1186/1471-2180-10-53⟩ Article dans une revue pasteur-00670630v1
PecS is a global regulator of the symptomatic phase in the phytopathogenic bacterium Erwinia chrysanthemi 3937 F. Hommais,C. Oger-Desfeux,F. van Gijsegem,S. Castang,S. Ligoriet al. Journal of Bacteriology, 2008, 190 (22), pp.7508-22 Article dans une revue hal-01997038v1
H-NS and H-NS-like proteins in Gram-negative bacteria and their multiple role in the regulation of bacterial metabolism. Philippe Bertin,Florence Hommais,Evelyne Krin,Olga Soutourina,Christian Tendenget al. Biochimie, 2001, 83 (2), pp.235-241. ⟨10.1016/S0300-9084(01)01247-0⟩ Article dans une revue istex hal-01759743v1

Communication dans un congrès (4)

Particularités génomiques et adaptations spécifiques des espèces bactériennes : cas d'Agrobacterium fabrum Tony Campillo,Jessica Baude,Ludovic Vial,Floriant Bellvert,Florent Lassalleet al. 10. Plant-Bacteria Interactions Meeting, 2012, Aussois, France Communication dans un congrès hal-02547657v1
La notion d'espèce en écologie microbienne T. Campillo,Malek Shams,Sally Burr,Martha Helena Ramírez-Bahena,Florent Lassalleet al. 1er Colloque National d'Ecologie Scientifique, Dec 2010, Montpellier, France Communication dans un congrès hal-02545628v1
Toward an ecological concept for bacterial species in Agrobacterium Tony Campillo,Florent Lassalle,M. Shams,Martha Helena Ramírez-Bahena,Jessica Baudeet al. 12th International Conference on Plant Pathogenic Bacteria, Jun 2010, Saint-Denis de La Réunion, France Communication dans un congrès hal-02545712v1
Identification de fonctions « spécifiques d'espèce » impliquées dans l'individualisation en écovar de l’espèce G8 du complexe Agrobacterium tumefaciens Florent Lassalle,Daniel Muller,Denis Costechareyre,David Chapulliot,Celine Lavireet al. Journées des Microbiologistes de l'INRA, May 2010, Poitiers, France Communication dans un congrès hal-02545733v1

Poster de conférence (1)

Exploring the genomic basis underlying the diversity of host-endosymbiont interactions in Sitophilus spp. weevils J Uxue Mendez Leyva,Agnès Vallier,Benjamin Gillet,Sandrine Hughes,Carole Vincent-Monégatet al. ALPHY - AIEM, Feb 2025, Lyon, France Poster de conférence hal-04940843v1

Autre publication scientifique (1)

Editorial: Roles of Regulatory RNAs in Bacterial Pathogens Florence Hommais,Olga Soutourina Roles of Regulatory RNAs in Bacterial Pathogens, 2022, ⟨10.3389/fmicb.2022.915005⟩ Autre publication scientifique hal-04888741v1

Pré-publication, Document de travail (2)

The power duo: how the interplay between nucleoid-associated proteins and small non-coding RNAs orchestrates the cellular regulatory symphony Sara Moutacharrif,Feth El Zahar Haichar,Sam Meyer,Cecile Ribot,Sylvie Reverchonet al. 2024 Pré-publication, Document de travail hal-04837512v1
Quantitative spatial analysis of bacterial transcriptome and chromosome structural data with GRATIOSA: application to twin-supercoiled domain distribution Maïwenn Pineau,Raphaël Forquet,Sylvie Reverchon,William Nasser,Florence Hommaiset al. 2024 Pré-publication, Document de travail hal-04806420v1