florent morio

Publications

Article dans une revue (112)

Compassionate Use of Olorofim for Invasive Mold Infections: A Nationwide Observational Study in France V Esnault,C. Godet,D Garcia-Hermoso,Alexandre Charmillon,P Parizeet al. Open Forum Infectious Diseases, 2026, 13 (1), pp.ofaf750. ⟨10.1093/ofid/ofaf750⟩ Article dans une revue hal-05512639v1
Multicenter Analysis of General presentations and Imaging features in Cerebral MUCORmycosis (MAGICMUCOR): towards different entities Clémentine de la Porte Des Vaux,Corentin Provost,Anne Coste,Raoul Herbrecht,Blandine Deniset al. Medical Mycology, 2026, 64, ⟨10.1093/mmy/myaf122⟩ Article dans une revue hal-05456570v1
Clinical Manifestations of Emerging Trichosporon spp. Infections, France Marie Desnos-Ollivier,Alexandre Alanio,Maud Gits-Muselli,Karine Boukris-Sitbon,Agathe Berthoet al. Emerging Infectious Diseases, 2026, 32 (1), pp.93-102. ⟨10.3201/eid3201.250504⟩ Article dans une revue hal-05491298v1
Hyperinfection with Anisakis simplex sensu stricto: observations from a cluster of two cases in France Manon Robert,Maureen Duflot,Fakhri Jeddi,Carelle Koudougou,Louise Durandet al. Food and Waterborne Parasitology, 2025, 40, pp.e00282. ⟨10.1016/j.fawpar.2025.e00282⟩ Article dans une revue hal-05295420v1
Prognostic impact and safety of early adjunctive corticosteroid therapy in HIV-negative severe pneumocystis pneumonia: a propensity-matched multicentre study Florian Reizine,Vicky Stiegler,Romain Lecuyer,Benoit Tessoulin,Guillaume Rieulet al. Thorax, 2025, pp.thorax-2025-223504. ⟨10.1136/thorax-2025-223504⟩ Article dans une revue inserm-05509714v1
Antifungal Resistance in Non-fumigatus Aspergillus Species Elie Djenontin,Rose-Anne Lavergne,Florent Morio,Eric Dannaoui Mycoses, 2025, 68 (4), pp.e70051. ⟨10.1111/myc.70051⟩ Article dans une revue hal-05333903v1
Screening, prevalence, and risk factors for secondary localization during candidemia in intensive care unit patients: the French CandidICU multicenter study Florian Reizine,Juliette Henry,Luc Desmedt,Christophe Camus,Valentin Coirieret al. Critical Care, 2025, 29 (1), pp.281. ⟨10.1186/s13054-025-05527-z⟩ Article dans une revue hal-05162430v1
The diagnosis of mucormycosis by PCR in patients at risk: a systematic review and meta-analysis Lottie Brown,Lena Tschiderer,Alexandre Alanio,Rosemary Barnes,Sharon C-A Chenet al. EClinicalMedicine, 2025, 81, pp.103115. ⟨10.1016/j.eclinm.2025.103115⟩ Article dans une revue hal-05014057v1
Development of in-house ELISA for Scedosporium/Lomentospora serodiagnosis Coralie Barrera,Marie-Elisabeth Bougnoux,Claire Hoffmann,Céline Damiani,Damien Costaet al. Medical Mycology, 2025, 63 (8), pp.myaf067. ⟨10.1093/mmy/myaf067⟩ Article dans une revue hal-05185259v1
Association between mycophenolic acid treatment and infection with specific strains of Pneumocystis jirovecii in solid organ transplant recipients in France and Switzerland: a multicentre, retrospective, cross-sectional study Claire V Hoffmann,Yannick Le Meur,Marie-Christine Moal,Anne Grall-Jézéquel,Nathan Le Nanet al. The Lancet Microbe, 2025, 6 (9), pp.101146. ⟨10.1016/j.lanmic.2025.101146⟩ Article dans une revue hal-05217817v1
Trichosporon and Antifungal Resistance: Current Knowledge and Gaps Isabela Lima Miranda,Nalu Teixeira Aguiar Peres,Rafael Wesley Bastos,Luana Rossato,Florent Morioet al. Mycopathologia, 2025, 190 (4), pp.59. ⟨10.1007/s11046-025-00969-z⟩ Article dans une revue hal-05327796v1
Agrochemical fungicides as environmental drivers of antifungal resistance Aura Lucia Chacon Parra,Vinicius Carvalho Pereira,Alyne Soares Freitas,Marcos Alves De Souza-Filho,Ana Sarah Aguiar Vieraet al. Science of the Total Environment, 2025, 1000, pp.180385. ⟨10.1016/j.scitotenv.2025.180385⟩ Article dans une revue hal-05329525v1
Elevating fungal care: bridging Brazil’s healthcare practices to global standards Jon Salmanton-García,Diego Falci,Oliver Cornely,Alessandro Pasqualotto,Afonso Barthet al. Microbiology Spectrum, 2025, 13 (4), pp.102799. ⟨10.1128/spectrum.02112-24⟩ Article dans une revue hal-05169393v1
Kodamaea ohmeri : an emergent yeast from a One Health perspective Sthefany Emanuelle Silva,Lorena Souza Silva,Ludmila Gouveia Eufrasio,Gabriela Silva Cruz,Fabíola Luciniet al. Current Research in Microbial Sciences, 2025, 8, pp.100359. ⟨10.1016/j.crmicr.2025.100359⟩ Article dans une revue hal-05162032v1
Features of Invasive Aspergillosis Caused by Aspergillus flavus , France, 2012–2018 Lise Bertin-Biasutto,Olivier Paccoud,Dea Garcia-Hermoso,Blandine Denis,Karine Boukris-Sitbonet al. Emerging Infectious Diseases, 2025, 31 (5), pp.896-905. ⟨10.3201/eid3105.241392⟩ Article dans une revue hal-05169425v1
A one health perspective on Diutina catenulata: Phenotypic traits, stress sensitivity, and virulence across diverse isolates Ianca Karine Prudencio de Albuquerque,Florent Morio,Marjorie Albassier,Luc Baron,Léa Duchesneet al. Journal of Medical Mycology = Journal de Mycologie Médicale, 2025, 35, pp.101583. ⟨10.1016/j.mycmed.2025.101583⟩ Article dans une revue hal-05329491v1
Yeast fungaemia among injection drug users in France (2012–2022): a cross-sectional observational study Olivier Paccoud,Olivier Lortholary,Sebastien Imbert,Valerie Letscher-Bru,Karine Boukris-Sitbonet al. The Lancet Regional Health - Europe, 2025, 55, pp.101365. ⟨10.1016/j.lanepe.2025.101365⟩ Article dans une revue pasteur-05142436v1
Interlaboratory assays from the fungal PCR Initiative and the Modimucor Study Group to improve qPCR detection of Mucorales DNA in serum: one more step toward standardization Steffi Rocchi,Emeline Scherer,P Lewis White,Audrey Guitton,Alexandre Alanioet al. Journal of Clinical Microbiology, 2025, 63 (2), pp.e0152524. ⟨10.1128/jcm.01525-24⟩ Article dans une revue hal-04862485v1
Epidemiology and Prognostic Factors Associated With Mold-Positive Blood Cultures: 10-Year Data From a French Prospective Surveillance Program (2012–2022) Thiziri Tala-Ighil,Dea Garcia-Hermoso,Frédéric Dalle,Sophie Cassaing,Juliette Guitardet al. Clinical Infectious Diseases, 2025, 80 (3), pp.529-539. ⟨10.1093/cid/ciae594⟩ Article dans une revue pasteur-04882051v1
Respiratory management of critically ill pneumocystis pneumonia patients: a multicenter retrospective study Florian Reizine,Vicky Stiegler,Romain Lécuyer,Benoit Tessoulin,Marie Gallaiset al. Annals of Intensive Care, 2025, 15, pp.114. ⟨10.1186/s13613-025-01503-6⟩ Article dans une revue hal-05334494v1
Precise genome editing underlines the distinct contributions of mutations in ERG11 , ERG3 , MRR1 , and TAC1 genes to antifungal resistance in Candida parapsilosis Sophie Hartuis,Isabelle Ourliac-Garnier,Estelle Robert,Marjorie Albassier,Léa Duchesneet al. Antimicrobial Agents and Chemotherapy, 2024, 68 (6), ⟨10.1128/aac.00022-24⟩ Article dans une revue hal-04879909v1
Use of the Mucorales qPCR on blood to screen high-risk hematology patients is associated with better survival Anne-Pauline Bellanger,Gbaguidi-Haore Houssein,Ana Berceanu,Laura Gouzien,Chaima El Machhouret al. Medical Mycology, 2024, ⟨10.1093/mmy/myae030⟩ Article dans une revue hal-04524410v1
Alternative sulphur metabolism in the fungal pathogen Candida parapsilosis Lisa Lombardi,Letal I Salzberg,Eoin Ó Cinnéide,Caoimhe O’brien,Florent Morioet al. Nature Communications, 2024, 15, pp.9190. ⟨10.1038/s41467-024-53442-8⟩ Article dans une revue hal-05329629v1
Enterocytozoon bieneusi, a human pathogen Céline Nourrisson,Rose-Anne Lavergne,Maxime Moniot,Florent Morio,Philippe Poirier Emerging microbes & infections, 2024, 13 (1), pp.2406276. ⟨10.1080/22221751.2024.2406276⟩ Article dans une revue hal-05332942v1
Cryptococcus neoformans Infections Differ Among Human Immunodeficiency Virus (HIV)–Seropositive and HIV-Seronegative Individuals: Results From a Nationwide Surveillance Program in France Olivier Paccoud,Marie Desnos-Ollivier,Sophie Cassaing,Karine Boukris-Sitbon,Alexandre Alanioet al. Open Forum Infectious Diseases, 2024, 11 (2), pp.ofad658. ⟨10.1093/ofid/ofad658⟩ Article dans une revue hal-04473848v1
The epidemiology of fungal infections in transplant patients Dorra Elhaj Mahmoud,Anaïs Herivaux,Florent Morio,Benoit Briard,Cécile Vigneauet al. Biomedical journal, 2024, 47 (3), pp.100719. ⟨10.1016/j.bj.2024.100719⟩ Article dans une revue hal-04536323v1
Fumagillin Shortage: How to Treat Enterocytozoon bieneusi Microsporidiosis in Solid Organ Transplant Recipients in 2024? Cyril Garrouste,Philippe Poirier,Charlotte Uro-Coste,Xavier Iriart,Nassim Kamaret al. Transplant International, 2024, 37, pp.13518. ⟨10.3389/ti.2024.13518⟩ Article dans une revue hal-04862668v1
Laboratory practices for the diagnosis and management of mucormycosis in France, 2024 Laurence Millon,Françoise Botterel,Julie Bonhomme,Stéphane Valot,Philippe Poirieret al. Journal of Medical Mycology = Journal de Mycologie Médicale, 2024, 34 (4), pp.101520. ⟨10.1016/j.mycmed.2024.101520⟩ Article dans une revue hal-04807226v1
Heteroresistance: a hidden cause behind antifungal prophylaxis failure Anaïs Hérivaux,Nicolas Papon,Florent Morio Trends in Microbiology, 2024, 32 (11), pp.1042-1044. ⟨10.1016/j.tim.2024.09.008⟩ Article dans une revue hal-05169891v1
Should We Reconsider Pneumocystis Pneumonia Presentation and Treatment According to Its Underlying Disease? Benjamin Gaborit,Romain Lécuyer,Nahéma Issa,Fabrice Camou,Rose‐anne Lavergneet al. Chest, 2024, pp.S0012-3692(24)00692-5. ⟨10.1016/j.chest.2024.04.038⟩ Article dans une revue inserm-04676363v1
Plasmodium ovale spp dhfr mutations associated with reduced susceptibility to pyrimethamine in sub-Saharan Africa: a retrospective genetic epidemiology and functional study Valentin Joste,Romain Coppée,Justine Bailly,Yann Rakotoarivony,Francine Ghislaine Toko Tchokoteuet al. The Lancet Microbe, 2024, 5 (7), pp.669-678. ⟨10.1016/S2666-5247(24)00054-5⟩ Article dans une revue hal-04675541v1
Epidemiology and prognostic factors of mucormycosis in France (2012–2022): a cross-sectional study nested in a prospective surveillance programme Laura Gouzien,Didier Che,Sophie Cassaing,Olivier Lortholary,Valerie Letscher-Bruet al. The Lancet Regional Health - Europe, 2024, 45, pp.101010. ⟨10.1016/j.lanepe.2024.101010⟩ Article dans une revue hal-04688848v1
Features of cryptococcosis among 652 HIV-seronegative individuals in France: a cross-sectional observational study (2005-2020) Olivier Paccoud,Marie Desnos-Ollivier,Florence Persat,Magalie Demar,Karine Boukris-Sitbonet al. Clinical Microbiology and Infection, 2024, 30 (7), pp.937-944. ⟨10.1016/j.cmi.2024.03.031⟩ Article dans une revue hal-04528767v1
Transthyretin amyloid cardiomyopathy in France: A cross-sectional multi-centre study (333 patients) Thibaud Damy,Erwan Donal,Olivier Lairez,Jean‐christophe Eicher,Mounira Karoubiet al. Rare, 2024, Rare, 2, pp.100021. ⟨10.1016/j.rare.2024.100021⟩ Article dans une revue hal-04477521v1
Characteristics and Prognosis Factors of Pneumocystis jirovecii Pneumonia According to Underlying Disease Romain Lécuyer,Nahéma Issa,Fabrice Camou,Rose‐anne Lavergne,Frederic Gabrielet al. Chest, 2024, pp.S0012-3692(24)00022-9. ⟨10.1016/j.chest.2024.01.015⟩ Article dans une revue inserm-04446239v1
Invasive fungal diseases in patients with autoimmune diseases: a case series from the French RESSIF network Simon Galmiche,Benjamin Thoreau,Stéphane Bretagne,Alexandre Alanio,André Paugamet al. RMD Open, 2023, 9 (3), pp.e003281. ⟨10.1136/rmdopen-2023-003281⟩ Article dans une revue hal-04205646v1
Acquired fluconazole resistance and genetic clustering in Diutina (Candida) catenulata from clinical samples Céline Nourrisson,Maxime Moniot,Rose-Anne Lavergne,Estelle Robert,Virginie Bonninet al. Clinical Microbiology and Infection, 2023, 29 (2), pp.257.e7-257.e11. ⟨10.1016/j.cmi.2022.09.021⟩ Article dans une revue hal-04758751v1
Atovaquone exposure and Pneumocystis jirovecii cytochrome b mutations: French data and review of the literature Pierre Bonnet,Claire Hoffmann,Nathan Le Nan,Lorenn Bellamy,Gautier Hoarauet al. Medical Mycology, 2023, 61 (9), ⟨10.1093/mmy/myad095⟩ Article dans une revue hal-04301211v1
Improving Diagnosis of Pulmonary Mucormycosis Anne Coste,Anne Conrad,Raphaël Porcher,Sylvain Poirée,Pierre Peterlinet al. Chest, 2023, 164 (5), pp.1097-1107. ⟨10.1016/j.chest.2023.06.039⟩ Article dans une revue hal-04249315v1
Gradient concentration strip–specific epidemiological cut-off values of antifungal drugs in various yeast species and five prevalent Aspergillus species complexes Victor Mercier,Valérie Letscher-Bru,Marie-Elisabeth Bougnoux,Laurence Delhaes,Françoise Botterelet al. Clinical Microbiology and Infection, 2023, 29 (5), pp.652.e9-652.e15. ⟨10.1016/j.cmi.2022.11.030⟩ Article dans une revue hal-03994435v2
Invasive bone and joint infections from the French Scedosporiosis/lomentosporiosis Observational Study (SOS) cohort: no mortality with long-term antifungal treatment and surgery Damien Blez,Didier Bronnimann,Blandine Rammaert,Valérie Zeller,Laurence Delhaeset al. Medical Mycology, 2023, 61 (3), ⟨10.1093/mmy/myad023⟩ Article dans une revue hal-04065351v1
Draft Genome Sequence of the Fluconazole-Resistant Yarrowia lipolytica Clinical Isolate CBS 18115 Rose-Anne Lavergne,Paul Barbier,Lenha Mobuchon,Atanu Banerjee,Rajendra Prasadet al. Microbiology Resource Announcements, 2023, 12 (4), pp.2. ⟨10.1128/mra.01260-22⟩ Article dans une revue hal-04827838v1
Draft Genome Sequence of the Fluconazole-Resistant Candida palmioleophila Clinical Isolate CBS 18098 Rose-Anne Lavergne,Paul Barbier,Lenha Mobuchon,Atanu Banerjee,Rajendra Prasadet al. Mycopathologia, 2022, 188 (1-2), pp.169-171. ⟨10.1007/s11046-022-00682-1⟩ Article dans une revue hal-04809175v1
Highly Conserved gsc1 Gene of Pneumocystis jirovecii in Patients with or without Prior Exposure to Echinocandins Pierre Bonnet,Solène Le Gal,Claire Hoffmann,Florent Morio,Fouleymata Diabiraet al. Antimicrobial Agents and Chemotherapy, 2022, 66 (1), ⟨10.1128/AAC.01563-21⟩ Article dans une revue hal-04301232v1
The Novodiag® Stool parasites assay, an innovative high-plex technique for fast detection of protozoa, helminths and microsporidia in stool samples: a retrospective and prospective study Sophie Hartuis,Rose-Anne Lavergne,Céline Nourrisson,Jaco Verweij,Guillaume Desoubeauxet al. Parasite, 2022, 29, pp.1-8. ⟨10.1051/parasite/2022026⟩ Article dans une revue hal-03668002v1
Fungal infections in mechanically ventilated patients with COVID-19 during the first wave: the French multicentre MYCOVID study Jean-Pierre Gangneux,Eric Dannaoui,Arnaud Fekkar,Charles-Edouard Luyt,Françoise Botterelet al. The Lancet Respiratory Medicine, 2022, 10 (2), pp.180-190. ⟨10.1016/s2213-2600(21)00442-2⟩ Article dans une revue inserm-03587204v1
Epidemiology and Clinical Impact of Respiratory Coinfections at Diagnosis of Pneumocystis jirovecii Pneumonia Romain Lécuyer,Nahema Issa,Benoit Tessoulin,Rose-Anne Lavergne,Florent Morioet al. Journal of Infectious Diseases, 2022, 225 (5), pp.868-880. ⟨10.1093/infdis/jiab460⟩ Article dans une revue hal-04809416v1
Immune alveolitis in interstitial lung disease: an attractive cytological profile in immunocompromised patients Antoine Moui,Stéphanie Dirou,Christine Sagan,Renan Liberge,Claire Defranceet al. BMC Pulmonary Medicine, 2022, 22 (1), pp.79. ⟨10.1186/s12890-022-01871-w⟩ Article dans une revue inserm-03693149v1
Systematic Analysis of Copy Number Variations in the Pathogenic Yeast Candida parapsilosis Identifies a Gene Amplification in &lt;i&gt;RTA3&lt;/i&gt; That is Associated with Drug Resistance Sean A Bergin,Fang Zhao,Adam P Ryan,Carolin A Müller,Conrad A Nieduszynskiet al. mBio, 2022, 13 (5), ⟨10.1128/mbio.01777-22⟩ Article dans une revue hal-04758821v1
A summary of cryptosporidiosis outbreaks reported in France and overseas departments, 2017–2020 Damien Costa,Romy Razakandrainibe,Louise Basmaciyan,Jérôme Raibaut,Pascal Delaunayet al. Food and Waterborne Parasitology, 2022, 27, pp.e00160. ⟨10.1016/j.fawpar.2022.e00160⟩ Article dans une revue hal-03859494v1
Evaluation of serum Mucorales PCR for the diagnosis of Mucormycoses: The MODIMUCOR prospective trial Laurence Millon,Denis Caillot,Ana Berceanu,Stéphane Bretagne,Fanny Lanternieret al. Clinical Infectious Diseases, 2022, 75 (5), pp.777-785. ⟨10.1093/cid/ciab1066⟩ Article dans une revue hal-03528144v1
Selecting a multiplex PCR panel for accurate molecular diagnosis of intestinal protists: a comparative study of Allplex ® (Seegene ® ), G-DiaParaTrio (Diagenode ® ), and RIDA ® GENE (R-Biopharm ® ) assays and microscopic examination Nicolas Argy,Céline Nourrisson,Ahmed Aboubacar,Philippe Poirier,Stéphane Valotet al. Parasite, 2022, 29, pp.5. ⟨10.1051/parasite/2022003⟩ Article dans une revue hal-03572136v1
Active Surveillance Program to Increase Awareness on Invasive Fungal Diseases: the French RESSIF Network (2012 to 2018) Stéphane Bretagne,Karine Sitbon,Marie Desnos-Ollivier,Dea Garcia-Hermoso,Valérie Letscher-Bruet al. mBio, 2022, 13 (3), pp.e0092022. ⟨10.1128/mbio.00920-22⟩ Article dans une revue hal-03658122v1
De novo Nanopore Genome Sequencing of the Clinical Diutina catenulata Type-strain CBS565 Sander Boden,Florent Morio,Miaomiao Zhou,Bert Gerrits van den Ende,Ferry Hagen Mycopathologia, 2022, 187 (4), pp.417-420. ⟨10.1007/s11046-022-00632-x⟩ Article dans une revue hal-04758886v1
Une expulsion bien singulière d'un ver adulte de Loa loa Arthur Aubry,Charles Hervochon,Marie Chauveau,Marie Denis-Musquer,Fakhri Jeddiet al. Revue Francophone des Laboratoires, 2022, 538, pp.72-75. ⟨10.1016/S1773-035X(21)00381-6⟩ Article dans une revue hal-03630278v1
Impact of TR34/L98H, TR46/Y121F/T289A and TR53 Alterations in Azole-Resistant Aspergillus fumigatus on Sterol Composition and Modifications after In Vitro Exposure to Itraconazole and Voriconazole Rose-Anne Lavergne,Marjorie Albassier,Jean-Benoît Hardouin,Carlos Alvarez-Moreno,Fabrice Pagniezet al. Microorganisms, 2022, 10 (1), pp.104. ⟨10.3390/microorganisms10010104⟩ Article dans une revue hal-03778408v1
Cryptococcal Meningitis in Kidney Transplant Recipients: A Two-Decade Cohort Study in France Laurène Tardieu,Gillian Divard,Olivier Lortholary,Anne Scemla,Éric Rondeauet al. Pathogens, 2022, 11 (6), pp.699. ⟨10.3390/pathogens11060699⟩ Article dans une revue hal-03789427v1
Collateral consequences of agricultural fungicides on pathogenic yeasts: A One Health perspective to tackle azole resistance Débora Castelo‐branco,Shawn Lockhart,Yee‐chun Chen,Daniel Santos,Ferry Hagenet al. Mycoses, 2021, 65, pp.303 - 311. ⟨10.1111/myc.13404⟩ Article dans une revue hal-03630279v1
Serum (1 → 3)‐β‐D‐glucan could be useful to rule out invasive candidiasis in neonates with an adapted cut‐off Pauline Cliquennois,Pauline Scherdel,Rose‐anne Lavergne,Cyril Flamant,Florent Morioet al. Acta Paediatrica, 2021, 110 (1), pp.79-84. ⟨10.1111/apa.15321⟩ Article dans une revue hal-03562034v1
Interlaboratory evaluation of Mucorales PCR assays for testing serum specimens S Rocchi,E Scherer,C Mengoli,A Alanio,F Botterelet al. Medical Mycology, 2021, 59 (2), pp.126-138. ⟨10.1093/mmy/myaa036⟩ Article dans une revue hal-03123965v1
Commercial Simplex and Multiplex PCR Assays for the Detection of Intestinal Parasites Giardia intestinalis, Entamoeba spp., and Cryptosporidium spp.: Comparative Evaluation of Seven Commercial PCR Kits with Routine In-House Simplex PCR Assays Louise Basmaciyan,Alexandre François,Anne Vincent,Stéphane Valot,Alain Bonninet al. Microorganisms, 2021, 9 (11), pp.2325. ⟨10.3390/microorganisms9112325⟩ Article dans une revue hal-03751896v1
The CRISPR toolbox in medical mycology: State of the art and perspectives Florent Morio,Lisa Lombardi,Geraldine Butler PLoS Pathogens, 2020, 16 (1), pp.e1008201. ⟨10.1371/journal.ppat.1008201⟩ Article dans une revue hal-03842369v2
Hormographiella aspergillata: an emerging basidiomycete in the clinical setting? A case report and literature review Maxime Moniot,Rose‐anne Lavergne,Thomas Morel,Romain Guieze,Florent Morioet al. BMC Infectious Diseases, 2020, 20 (1), pp.945. ⟨10.1186/s12879-020-05679-z⟩ Article dans une revue hal-03945682v2
A proposal for pragmatic investigation of possible clonal clusters of pneumocystis pneumonia cases G. Nevez,Florent Morio,P. Bonnet,N. Le Nan,F.-X. Blancet al. Journal of Hospital Infection, 2020, 108, pp.215-216. ⟨10.1016/j.jhin.2020.11.022⟩ Article dans une revue hal-03790509v1
Update on the diagnosis of parasitic and fungal infections Emilie Fréalle,Stéphane Valot,Renaud Piarroux,Jean Menotti,Laurence Lachaudet al. Annales de Biologie Clinique, 2020, 78 (3), pp.299-313. ⟨10.1684/abc.2020.1554⟩ Article dans une revue hal-03610929v1
Not All Clusters of Pneumocystis Pneumonia Cases are Related to Nosocomial Infections: A Proposal for a Pragmatic Approach to Investigate Possible Clonal Clusters Gilles Nevez,Florent Morio,Pierre Bonnet,Nathan Le Nan,François-Xavier Blanceet al. Journal of Hospital Infection, 2020, ⟨10.1016/j.jhin.2020.11.022⟩ Article dans une revue hal-03062660v1
Dear medical mycologists, it is time to look outside the box Florent Morio FEMS Yeast Research, 2020, 20 (1), ⟨10.1093/femsyr/foz080⟩ Article dans une revue hal-03842042v2
Draft Genome Sequence of the Yeast Kazachstania telluris CBS 16338 Isolated from Forest Soil in Ireland Florent Morio,Caoimhe O’brien,Geraldine Butler Mycopathologia, 2020, 185 (3), pp.587-590. ⟨10.1007/s11046-020-00449-6⟩ Article dans une revue hal-03842559v1
Signaling Pathways Governing the Caspofungin Paradoxical Effect in Aspergillus fumigatus Nicolas Papon,Florent Morio,Dominique Sanglard mBio, 2020, 11 (4), pp.1816-20. ⟨10.1128/mBio.01816-20⟩ Article dans une revue hal-02942844v1
Ibrutinib, a Bruton's tyrosine kinase inhibitor, a new risk factor for cryptococcosis Julia Brochard,Florent Morio,Julien Mahe,Patrice Le Pape,T. Guimardet al. Médecine et Maladies Infectieuses (1971-2020), 2020, 50, pp.742 - 745. ⟨10.1016/j.medmal.2020.07.005⟩ Article dans une revue hal-03492593v1
Comparison of MultiLocus Sequence Typing (MLST) and Microsatellite Length Polymorphism (MLP) for Pneumocystis jirovecii genotyping Maud Gits-Muselli,Pascal Campagne,Marie Desnos-Ollivier,Patrice Le Pape,Stéphane Bretagneet al. Computational and Structural Biotechnology Journal, 2020, 18, pp.2890-2896. ⟨10.1016/j.csbj.2020.10.005⟩ Article dans une revue pasteur-03243552v1
Species Distribution and Comparison between EUCAST and Gradient Concentration Strips Methods for Antifungal Susceptibility Testing of 112 Aspergillus Section Nigri Isolates B. Carrara,R. Richards,S. Imbert,Florent Morio,Milène Sassoet al. Antimicrobial Agents and Chemotherapy, 2020, 64 (7), ⟨10.1128/AAC.02510-19⟩ Article dans une revue (data paper) hal-04850428v1
Invasive aspergillosis due to Aspergillus section Usti: a multicenter retrospective study Emmanouil Glampedakis,Sophie Cassaing,Arnaud Fekkar,Eric Dannaoui,Marie-Elisabeth Bougnouxet al. Clinical Infectious Diseases, 2020, 72, pp.1379-1385. ⟨10.1093/cid/ciaa230⟩ Article dans une revue hal-02543503v1
Scedosporiosis/lomentosporiosis observational study (SOS): Clinical significance of Scedosporium species identification Didier Bronnimann,Dea Garcia-Hermoso,Françoise Dromer,Fanny Lanternier,Laurence Maulinet al. Medical Mycology, 2020, 59 (5), pp.486 - 497. ⟨10.1093/mmy/myaa086⟩ Article dans une revue pasteur-03222501v1
Fungicide-driven alterations in azole-resistant Aspergillus fumigatus are related to vegetable crops in Colombia, South America Carlos Alvarez-Moreno,Rose-Anne Lavergne,Ferry Hagen,Florent Morio,Jacques Meiset al. Mycologia, 2019, 111 (2), pp.217-224. ⟨10.1080/00275514.2018.1557796⟩ Article dans une revue hal-04712281v1
Rapid diagnostic tests relying on antigen detection from stool as an efficient point of care testing strategy for giardiasis and cryptosporidiosis? Evaluation of a new immunochromatographic duplex assay Adeline Goudal,Adrien Laude,Stéphane Valot,Guillaume Desoubeaux,Nicolas Argyet al. Diagnostic Microbiology and Infectious Disease, 2019, 93 (1), pp.33-36. ⟨10.1016/j.diagmicrobio.2018.07.012⟩ Article dans une revue istex hal-01987699v1
Prevalence, geographic risk factor, and development of a standardized protocol for fungal isolation in cystic fibrosis: Results from the international prospective study “MFIP” Laurence Delhaes,Kada Touati,Muriel Cornet,Rafael Cantón,Françoise Botterelet al. Journal of Cystic Fibrosis, 2019, 18 (2), pp.212-220. ⟨10.1016/j.jcf.2018.10.001⟩ Article dans une revue hal-02316590v1
One year prospective survey of azole resistance in Aspergillus fumigatus at a French cystic fibrosis reference centre: prevalence and mechanisms of resistance Rose-Anne Lavergne,Florent Morio,I. Danner-Boucher,D. Horeau-Langlard,V. Davidet al. Journal of Antimicrobial Chemotherapy, 2019, 74 (7), pp.1884-1889. ⟨10.1093/jac/dkz144⟩ Article dans une revue hal-04712354v1
Comparison between MALDI-TOF MS and MicroScan in the identification of emerging and multidrug resistant yeasts in a fourth-level hospital in Bogotá, Colombia Andrés Ceballos-Garzón,Gloria Cortes,Florent Morio,Edna Zamora-Cruz,Melva Linareset al. BMC Microbiology, 2019, 19 (1), pp.106. ⟨10.1186/s12866-019-1482-y⟩ Article dans une revue hal-04718726v1
Precise genome editing using a CRISPR-Cas9 method highlights the role of CoERG11 amino acid substitutions in azole resistance in Candida orthopsilosis Florent Morio,Lisa Lombardi,Ulrike Binder,Cédric Logé,Estelle Robertet al. Journal of Antimicrobial Chemotherapy, 2019, 74 (8), pp.2230-2238. ⟨10.1093/jac/dkz204⟩ Article dans une revue hal-03827474v1
Genotyping Approach for Potential Common Source of Enterocytozoon bieneusi Infection in Hematology Unit Guillaume Desoubeaux,Céline Nourrisson,Maxime Moniot,Marie-Alix de Kyvon,Virginie Bonninet al. Emerging Infectious Diseases, 2019, 25 (9), pp.1625-1631. ⟨10.3201/eid2509.190311⟩ Article dans une revue hal-02439508v1
Assessment of the first commercial multiplex PCR kit (ParaGENIE Crypto-Micro Real-Time PCR) for the detection of Cryptosporidium spp., Enterocytozoon bieneusi, and Encephalitozoon intestinalis from fecal samples Florent Morio,Philippe Poirier,Yohann Le Govic,Adrien Laude,Stephane Valotet al. Diagnostic Microbiology and Infectious Disease, 2019, 95 (1), pp.34-37. ⟨10.1016/j.diagmicrobio.2019.04.004⟩ Article dans une revue istex hal-02483139v1
Human cryptosporidiosis in immunodeficient patients in France (2015–2017) Damien Costa,Romy Razakandrainibe,Marc Sautour,Stéphane Valot,Louise Basmaciyanet al. Experimental Parasitology, 2018, 192, pp.108-112. ⟨10.1016/j.exppara.2018.08.001⟩ Article dans une revue istex hal-02902544v1
Evaluation of a new multiplex PCR assay (ParaGENIE G-Amoeba Real-Time PCR kit) targeting Giardia intestinalis, Entamoeba histolytica and Entamoeba dispar/Entamoeba moshkovskii from stool specimens: evidence for the limited performances of microscopy-based approach for amoeba species identification Florent Morio,Stéphane Valot,A. Laude,Guillaume Desoubeaux,N. Argyet al. Clinical Microbiology and Infection, 2018, 24 (11), pp.1205-1209. ⟨10.1016/j.cmi.2018.02.007⟩ Article dans une revue hal-01987706v1
Azole Resistance in Aspergillus fumigatus in Patients with Cystic Fibrosis: A Matter of Concern? A. Hamprecht,Florent Morio,O. Bader,Patrice Le Pape,J. Steinmannet al. Mycopathologia, 2018, 183 (1), pp.151-160. ⟨10.1007/s11046-017-0162-4⟩ Article dans une revue hal-03997691v1
First report of sporadic cases of Candida auris in Colombia Claudia Parra-Giraldo,Sandra Valderrama,Gloria Cortes-Fraile,Javier Garzón,Beatriz Arizaet al. International Journal of Infectious Diseases, 2018, 69, pp.63-67. ⟨10.1016/j.ijid.2018.01.034⟩ Article dans une revue hal-03795018v2
PCR-based detection of Aspergillus fumigatus and absence of azole resistance due to TR 34 /L98H in a french multicenter cohort of 137 patients with fungal rhinosinusitis Florent Morio,Eric Dannaoui,Taieb Chouaki,Estelle Cateau,Olivier Malardet al. Mycoses, 2018, 61 (1), pp.30 - 34. ⟨10.1111/myc.12702⟩ Article dans une revue hal-01698243v1
Thermothelomyces thermophila human infections C. Nourrisson,D. Garcia-Hermoso,Florent Morio,C. Kauffmann-Lacroix,N. Berretteet al. Clinical Microbiology and Infection, 2017, 23 (5), pp.338 - 341. ⟨10.1016/j.cmi.2016.10.025⟩ Article dans une revue hal-01852116v1
Molecular basis of antifungal drug resistance in yeasts Florent Morio,Rasmus Hare Jensen,Patrice Le Pape,Maiken Cavling Arendrup International Journal of Antimicrobial Agents, 2017, 50 (5), pp.599-606. ⟨10.1016/j.ijantimicag.2017.05.012⟩ Article dans une revue hal-03842639v1
A misleading false-negative result of Pneumocystis real-time PCR assay due to a rare punctual mutation: A French multicenter study. Solène Le Gal,Florence Robert-Gangneux,Yann Pepino,Sorya Belaz,Céline Damianiet al. Medical Mycology, 2017, 55 (2), pp.180-184. ⟨10.1093/mmy/myw051⟩ Article dans une revue hal-01477200v1
Home Environment as a Source of Life-Threatening Azole-Resistant Aspergillus fumigatus in Immunocompromised Patients Rose-Anne Lavergne,Taieb Chouaki,Ferry Hagen,Benedicte Toublanc,Herve Dupontet al. Clinical Infectious Diseases, 2017, 64 (1), pp.76-78. ⟨10.1093/cid/ciw664⟩ Article dans une revue hal-03577562v1
Diversity of Pneumocystis jirovecii Across Europe: A Multicentre Observational Study Alexandre Alanio,Maud Gits-Muselli,Nicolas Guigue,Marie Desnos-Ollivier,Enrique Calderonet al. EBioMedicine, 2017, 22, pp.155-163. ⟨10.1016/j.ebiom.2017.06.027⟩ Article dans une revue hal-01852128v1
Answer to May 2016 Photo Quiz Florent Morio,Sébastien Barbarot,Samuel Pineau,Hélène Aubert,Dea Garcia-Hermosoet al. Journal of Clinical Microbiology, 2016, 54 (5), pp.1409-1409. ⟨10.1128/JCM.01250-14⟩ Article dans une revue pasteur-04882324v1
Epidemiology, risk factor, species distribution, antifungal resistance and outcome of Candidemia at a single French hospital: a 7-year study Laurent Tadec,Jean-Philippe Talarmin,Thomas Gastinne,Cédric Bretonnière,Michel Miegevilleet al. Mycoses, 2016, 59 (5), pp.296-303. ⟨10.1111/myc.12470⟩ Article dans une revue hal-03813883v1
Prevalence, risk factors for infection and subtype distribution of the intestinal parasite Blastocystis sp. from a large-scale multi-center study in France Dima El Safadi,Amandine Cian,Céline Nourrisson,Bruno Pereira,Christelle Morelleet al. BMC Infectious Diseases, 2016, 16 (1), pp.451. ⟨10.1186/s12879-016-1776-8⟩ Article dans une revue hal-01368323v1
Colonization with the enteric protozoa Blastocystis is associated with increased diversity of human gut bacterial microbiota Christophe Audebert,Gaël Even,Amandine Cian,Dima El Safadi,Gabriela Certadet al. Scientific Reports, 2016, 6, pp.25255. ⟨10.1038/srep25255⟩ Article dans une revue hal-01363189v1
Epidemiological Outbreaks of Pneumocystis jirovecii Pneumonia Are Not Limited to Kidney Transplant Recipients: Genotyping Confirms Common Source of Transmission in a Liver Transplantation Unit Guillaume Desoubeaux,Manon Dominique,Florent Morio,Rose-Anne Thepault,Claire Franck-Martelet al. Journal of Clinical Microbiology, 2016, ⟨10.1128/JCM.00133-16⟩ Article dans une revue hal-02443946v1
Identification of cryptic Candida species by MALDI-TOF mass spectrometry, not all MALDI-TOF systems are the same: focus on the C. parapsilosis species complex Marion Haas,Frederic Grenouillet,Sophie Loubersac,Beatriz Ariza,Line Pepin-Pugetet al. Diagnostic Microbiology and Infectious Disease, 2016, 86 (4), pp.385 - 386. ⟨10.1016/j.diagmicrobio.2016.08.028⟩ Article dans une revue hal-01397030v1
Is real-time PCR-based diagnosis similar in performance to routine parasitological examination for the identification of Giardia intestinalis , Cryptosporidium parvum / Cryptosporidium hominis and Entamoeba histolytica from stool samples? Evaluation of a new commercial multiplex PCR assay and literature review A. Laude,S. Valot,Guillaume Desoubeaux,N. Argy,C. Nourrissonet al. Clinical Microbiology and Infection, 2016, 22 (2), pp.190.e1-190.e8. ⟨10.1016/j.cmi.2015.10.019⟩ Article dans une revue hal-01698271v1
Early diagnosis and monitoring of mucormycosis by detection of circulating DNA in serum: retrospective analysis of 44 cases collected through the French Surveillance Network of Invasive Fungal Infections (RESSIF) L. Millon,R. Herbrecht,F. Grenouillet,Florent Morio,Alexandre Alanioet al. Clinical Microbiology and Infection, 2016, 22 (9), pp.810.e1--810.e8. ⟨10.1016/j.cmi.2015.12.006⟩ Article dans une revue pasteur-01405208v1
First Description of Azole-Resistant Aspergillus fumigatus Due to TR 46 /Y121F/T289A Mutation in France Rose-Anne Lavergne,Florent Morio,Loïc Favennec,Stéphane Dominique,Jacques Meiset al. Antimicrobial Agents and Chemotherapy, 2015, 59 (7), pp.4331-4335. ⟨10.1128/AAC.00127-15⟩ Article dans une revue hal-02317942v1
Deciphering azole resistance mechanisms with a focus on transcription factor-encoding genes TAC1, MRR1 and UPC2 in a set of fluconazole-resistant clinical isolates of Candida albicans Florent Morio,Fabrice Pagniez,Myriam Besse,Françoise Gay-Andrieu,Michel Miegevilleet al. International Journal of Antimicrobial Agents, 2013, 42 (5), pp.410-415. ⟨10.1016/j.ijantimicag.2013.07.013⟩ Article dans une revue istex hal-03827331v1
Longitudinal study assessing the return of chloroquine susceptibility of Plasmodium falciparum in isolates from travellers returning from West and Central Africa, 2000–2011 Dima El Safadi,Amandine Cian,Céline Nourrisson,Bruno Pereira,Christelle Morelleet al. Malaria Journal, 2013, 12 (1), pp.35. ⟨10.1186/1475-2875-12-35⟩ Article dans une revue hal-03528300v1
Successful treatment with fumagillin of the first pediatric case of digestive microsporidiosis in a liver-kidney transplant Guillaume Desoubeaux,Z Maakaroun-Vermesse,C Lier,E Bailly,Florent Morioet al. Transplant Infectious Disease, 2013, ⟨10.1111/tid.12158⟩ Article dans une revue istex hal-02443895v1
Phaeohyphomycosis due to Exophiala xenobiotica as a cause of fungal arthritis in an HIV-infected patient Florent Morio,Jean-Yves Le Berre,Dea Garcia-Hermoso,Mohammad Javad Najafzadeh,Sybren G. de Hooget al. Medical Mycology, 2012, 50 (5), pp.513-517. ⟨10.3109/13693786.2011.648218⟩ Article dans une revue pasteur-02262346v1
Amino acid substitutions in the Candida albicans sterol 5,6-desaturase (Erg3p) confer azole resistance: characterization of two novel mutants with impaired virulence Florent Morio,Fabrice Pagniez,C. Lacroix,Michel Miegeville,Patrice Le Pape Journal of Antimicrobial Chemotherapy, 2012, 67 (9), pp.2131-2138. ⟨10.1093/jac/dks186⟩ Article dans une revue hal-03822982v1
High prevalence of triazole resistance in Aspergillus fumigatus, especially mediated by TR/L98H, in a French cohort of patients with cystic fibrosis Florent Morio,Guillaume Ghislain Aubin,Isabelle Danner-Boucher,Alain Haloun,Emilie Sacchettoet al. Journal of Antimicrobial Chemotherapy, 2012, 67 (8), pp.1870-1873. ⟨10.1093/jac/dks160⟩ Article dans une revue pasteur-02262445v1
Fatal Invasive Infection with Fungemia Due to Microascus cirrosus after Heart and Lung Transplantation in a Patient with Cystic Fibrosis Charline Miossec,Florent Morio,Thierry Lepoivre,Patrice Le Pape,Dea Garcia-Hermosoet al. Journal of Clinical Microbiology, 2011, 49 (7), pp.2743-2747. ⟨10.1128/JCM.00127-11⟩ Article dans une revue pasteur-02262481v1
Design, Synthesis, and in vitro Antifungal Activity of 1-[(4-Substituted-benzyl)methylamino]-2-(2,4-difluorophenyl)-3-(1H-1,2,4-triazol-1-yl)propan-2-ols Rémi Guillon,Fabrice Pagniez,Francis Giraud,Damien Crépin,Carine Picotet al. ChemMedChem, 2011, 6 (5), pp.816 - 825. ⟨10.1002/cmdc.201000530⟩ Article dans une revue istex hal-01689176v1
Disseminated Scedosporium/Pseudallescheria Infection after Double-Lung Transplantation in Patients with Cystic Fibrosis Florent Morio,Delphine Horeau-Langlard,Françoise Gay-Andrieu,Jean-Philippe Talarmin,Alain Halounet al. Journal of Clinical Microbiology, 2010, 48 (5), pp.1978 - 1982. ⟨10.1128/JCM.01840-09⟩ Article dans une revue hal-03134637v1
Screening for amino acid substitutions in the Candida albicans Erg11 protein of azole-susceptible and azole-resistant clinical isolates: new substitutions and a review of the literature Florent Morio,Cédric Logé,Bernard Besse,Christophe Hennequin,Patrice Le Pape Diagnostic Microbiology and Infectious Disease, 2010, 66 (4), pp.373-384. ⟨10.1016/j.diagmicrobio.2009.11.006⟩ Article dans une revue istex hal-03830187v1
Dialister micraerophilus sp. nov. and Dialister propionicifaciens sp. nov., isolated from human clinical samples Estelle Jumas-Bilak,Hélène Jean-Pierre,Jean-Philippe Carlier,Corinne Teyssier,Kathryn Bernardet al. International Journal of Systematic and Evolutionary Microbiology, 2005, 55 (6), pp.2471-2478. ⟨10.1099/ijs.0.63715-0⟩ Article dans une revue hal-04330103v1

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Resistance to miltefosine results from amplification of the RTA3 floppase or inactivation of flippases in Candida parapsilosis Sean Bergin,Fang Zhao,Adam Ryan,Carolin Müller,Conrad Nieduszynskiet al. 2026 Pré-publication, Document de travail hal-05333899v1

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Prevalence, risk factors for infection and subtype distribution of the intestinal parasite Blastocystis sp. from a large-scale multi-center study in France Dima El Safadi,Amandine Cian,Céline Nourrisson,Bruno Pereira,Christelle Morelleet al. 2016, pp.451. ⟨10.1186/s12879-016-1776-8⟩ Autre publication scientifique hal-04466563v1

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Evaluation of the risk of fungal colonization/infection in patients with cystic fibrosis : an international prospective study comparing the performance of media for mycological culturing MucoFong International Project (MFIP) Kada Touati,Odile Faure-Cognet,Muriel Cornet,F. Chartier-Botterel,Eric Dannaouiet al. 8th European CF Young Investigator Meeting, 2014, Paris, France Communication dans un congrès hal-03136215v1
Utilisation du MALDI-TOF-MS pour l’identification rapide et précise des espèces cliniques de Scedosporium et de Pseudallescheria Emilie Sitterlé,Jean-Philippe Bouchara,B. Dauphin,Jean-Luc Béretti,Sandrine Giraudet al. Congrès de la Société Française de Mycologie Médicale, 2011, Paris, France Communication dans un congrès hal-03136195v1

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Scédosporiose disséminée après transplantation pulmonaire : une complication rare chez le patient atteint de mucoviscidose Florent Morio,Delphine Horeau-Langlard,Françoise Gay-Andrieu,Jean-Philippe Talarmin,Alain Halounet al. Congrès de la Société Française de Mycologie Médicale, 2009, Poitiers, France. 2009 Poster de conférence hal-03332099v1