|
Construction of a comprehensive library of repeated sequences for the annotation of Citrus genomes
Delphine Giraud
,
Nathalie Choisne
,
Marilyne Summo
,
Stéphanie Sidibe-Bocs
,
Héléna Vassilieff
et al.
Article dans une revue
hal-05041052
v1
|
|
Endogenous Caulimovirids: Fossils, Zombies, and Living in Plant Genomes
Héléna Vassilieff
,
Andrew Geering
,
Nathalie Choisne
,
Pierre-Yves Teycheney
,
Florian Maumus
Article dans une revue
hal-04152917
v1
|
|
Sidestepping Darwin: horizontal gene transfer from plants to insects
Clément Gilbert
,
Florian Maumus
Article dans une revue
hal-04072018
v1
|
|
How genomics can help biodiversity conservation
Kathrin Theissinger
,
Carlos Fernandes
,
Giulio Formenti
,
Iliana Bista
,
Paul Berg
et al.
Article dans une revue
hal-04082874
v1
|
|
A chromosome-scale assembly of the quinoa genome provides insights into the structure and dynamics of its subgenomes
Elodie Rey
,
Peter Maughan
,
Florian Maumus
,
Daniel Lewis
,
Leanne Wilson
et al.
Article dans une revue
hal-04344166
v1
|
|
Multiple Horizontal Acquisitions of Plant Genes in the Whitefly Bemisia tabaci
Clément Gilbert
,
Florian Maumus
Article dans une revue
hal-03846467
v1
|
|
The era of reference genomes in conservation genomics
Giulio Formenti
,
Kathrin Theissinger
,
Carlos Fernandes
,
Iliana Bista
,
Aureliano Bombarely
et al.
Article dans une revue
hal-03854324
v1
|
|
The era of reference genomes in conservation genomics
Florian Maumus
,
Giulio Formenti
,
Kathrin Theissinger
,
Carlos Fernandes
,
Iliana Bista
et al.
Article dans une revue
hal-03717473
v1
|
|
CAULIFINDER: a pipeline for the automated detection and annotation of caulimovirid endogenous viral elements in plant genomes
Héléna Vassilieff
,
Sana Haddad
,
Véronique Jamilloux
,
Nathalie Choisne
,
Vikas Sharma
et al.
Article dans une revue
hal-03883611
v1
|
|
Recent Acquisition of Functional m6A RNA Demethylase Domain in Orchid Ty3/Gypsy Elements
Luis Alvarado-Marchena
,
Mireya Martínez-Pérez
,
Frederic Aparicio
,
Vicente Pallas
,
Florian Maumus
Article dans une revue
hal-03717458
v1
|
|
Insertion of Badnaviral DNA in the Late Blight Resistance Gene (R1a) of Brinjal Eggplant (Solanum melongena)
Saad Serfraz
,
Vikas Sharma
,
Florian Maumus
,
Xavier Aubriot
,
Andrew D W Geering
et al.
Article dans une revue
hal-03328857
v1
|
|
Aethionema arabicum genome annotation using PacBio full‐length transcripts provides a valuable resource for seed dormancy and Brassicaceae evolution research
Noe Fernandez‐pozo
,
Timo Metz
,
Jake Chandler
,
Lydia Gramzow
,
Zsuzsanna Mérai
et al.
Article dans une revue
hal-03135342
v1
|
|
Gene-rich UV sex chromosomes harbor conserved regulators of sexual development
Sarah Carey
,
Jerry Jenkins
,
John Lovell
,
Florian Maumus
,
Avinash Sreedasyam
et al.
Article dans une revue
hal-03283299
v1
|
|
Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp
Sarah Farhat
,
Phuong Le
,
Ehsan Kayal
,
Benjamin Noel
,
Estelle Bigeard
et al.
Article dans une revue
hal-03114990
v1
|
|
Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest
Michael Sparks
,
Raman Bansal
,
Joshua Benoit
,
Michael Blackburn
,
Hsu Chao
et al.
Article dans une revue
hal-02927020
v1
|
|
Current status of the multinational Arabidopsis community
Keith Adams
,
Wagner Araújo
,
Sebastien Aubourg
,
Sacha Baginsky
,
Erica Bakker
et al.
Article dans une revue
hal-02927028
v1
|
|
Large-scale survey reveals pervasiveness and potential function of endogenous geminiviral sequences in plants
Vikas Sharma
,
Pierre Lefeuvre
,
Philippe Roumagnac
,
Denis Filloux
,
Pierre-Yves Teycheney
et al.
Article dans une revue
hal-02946712
v1
|
|
Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato
Michael Alonge
,
Xingang Wang
,
Matthias Benoit
,
Sebastian Soyk
,
Lara Pereira
et al.
Article dans une revue
hal-02927024
v1
|
|
Differential retention of transposable element-derived sequences in outcrossing Arabidopsis genomes
Sylvain Legrand
,
Thibault Caron
,
Florian Maumus
,
Sol Schvartzman
,
Leandro Quadrana
et al.
Article dans une revue
hal-02265374
v1
|
|
RepetDB: a unified resource for transposable element references
Joëlle Amselem
,
Guillaume Cornut
,
Nathalie Choisne
,
Michael Alaux
,
Françoise Alfama Depauw
et al.
Article dans une revue
hal-02625212
v1
|
|
Tracheophyte genomes keep track of the deep evolution of the <em>Caulimoviridae</em>
Seydina Issa Diop
,
Andrew D. W. Geering
,
Françoise Alfama-Depauw
,
Mikaël Loaec
,
Pierre-Yves Teycheney
et al.
Article dans une revue
hal-02626005
v1
|
|
Oak genome reveals facets of long lifespan
Christophe Plomion
,
Jean-Marc Aury
,
Joelle Amselem
,
Thibault Leroy
,
Florent Murat
et al.
Article dans une revue
hal-01820559
v1
|
|
Redistribution of CHH Methylation and Small Interfering RNAs across the Genome of Tomato ddm1 Mutants
Shira Corem
,
Adi Doron Faigenboim
,
Ophélie Jouffroy
,
Florian Maumus
,
Tzahi Arazi
et al.
Article dans une revue
hal-02628646
v1
|
|
The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution
Daniel Lang
,
Kristian Ullrich
,
Florent Murat
,
Jörg Fuchs
,
Jerry Jenkins
et al.
Article dans une revue
hal-01760352
v1
|
|
The <em>Chara</em> genome
Tomoaki Nishiyama
,
Hidetoshi Sakayama
,
Jan de Vries
,
Henrik Buschmann
,
Denis Saint-Marcoux
et al.
Article dans une revue
hal-02624417
v1
|
|
Integrative analysis of large scale transcriptome data draws a comprehensive landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms
Achal Rastogi
,
Uma Maheswari
,
Richard Dorrell
,
Fabio Rocha Jimenez Vieira
,
Florian Maumus
et al.
Article dans une revue
hal-02366536
v1
|
|
Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges
Anaïs Gouin
,
Anthony Bretaudeau
,
Kiwoong Nam
,
Sylvie Gimenez
,
Jean-Marc Aury
et al.
Article dans une revue
hal-01633879
v1
|
|
Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species
Thomas C. Mathers
,
Yazhou Chen
,
Gemy Kaithakottil
,
Fabrice Legeai
,
Sam T. Mugford
et al.
Article dans une revue
hal-01500475
v1
|
|
Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.
Thomas Mock
,
Robert P Otillar
,
Jan Strauss
,
Mark Mcmullan
,
Pirita Paajanen
et al.
Article dans une revue
hal-01587937
v1
|
|
De novo assembly of a new Solanum pennellii accession using nanopore sequencing
Maximilian H.-W. Schmidt
,
Alexander Vogel
,
Alisandra K. Denton
,
Benjamin Istace
,
Alexandra Wormit
et al.
Article dans une revue
hal-02625700
v1
|
|
Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom
Swaraj Basu
,
Shrikant Patil
,
Daniel Mapleson
,
Monia Teresa Russo
,
Laura Vitale
et al.
Article dans une revue
hal-01607004
v1
|
|
Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species
Thomas C. Mathers
,
Yazhou Chen
,
Gemy Kaithakottil
,
Fabrice Legeai
,
Sam T. Mugford
et al.
Article dans une revue
hal-01588181
v1
|
|
The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea
Jeanine L. Olsen
,
Pierre Rouzé
,
Bram Verhelst
,
Yao-Cheng Y.-C. Lin
,
Till Bayer
et al.
Article dans une revue
hal-01289099
v1
|
|
Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening
Ophélie Jouffroy
,
Surya Saha
,
Lukas Mueller
,
Hadi Quesneville
,
Florian Maumus
Article dans une revue
hal-02631886
v1
|
|
Study of gene trafficking between Acanthamoeba and giant viruses suggests an undiscovered family of Amoeba-infecting viruses
Florian Maumus
,
Guillaume Blanc
Article dans une revue
hal-01604735
v1
|
|
Erratum to :"Understanding Brassicaceae evolution through ancestral genome reconstruction" (vol 16, 262, 2015)
Florent Murat
,
Alexandra Louis
,
Florian Maumus
,
Alix Armero
,
Richard Cooke
et al.
Article dans une revue
hal-02630062
v1
|
|
Giant viruses at the core of microscopic wars with global impacts
Adrien Villain
,
Lucie Gallot-Lavallee
,
Guillaume Blanc
,
Florian Maumus
Article dans une revue
hal-02639930
v1
|
|
Impact and insights from ancient repetitive elements in plant genomes
Florian Maumus
,
Hadi Quesneville
Article dans une revue
hal-02638420
v1
|
|
Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation
Eva-Maria Willing
,
Vimal Rawat
,
Terezie Mandáková
,
Florian Maumus
,
Geo Velikkakam James
et al.
Article dans une revue
hal-01179557
v1
|
|
A new approach for annotation of transposable elements using small RNA mapping.
Moaine El Baidouri
,
Kyung Do Kim
,
Brian Abernathy
,
Siwaret Arikit
,
Florian Maumus
et al.
Article dans une revue
hal-01215276
v1
|
|
Impact of transposable elements on insect genomes and biology
Florian Maumus
,
Anna-Sophie Fiston-Lavier
,
Hadi Quesneville
Article dans une revue
hal-02640108
v1
|
|
Provirophages in the Bigelowiella genome bear testimony to past encounters with giant viruses
Guillaume Blanc
,
Lucie Gallot-Lavallee
,
Florian Maumus
Proceedings of the National Academy of Sciences of the United States of America, 2015, 112 (38), pp.E5318-E5326. ⟨10.1073/pnas.1506469112⟩
Article dans une revue
hal-02639645
v1
|
|
Understanding Brassicaceae evolution through ancestral genome reconstruction
Florent Murat
,
Alexandra Louis
,
Florian Maumus
,
Alix Armero Villanueva
,
Richard Cooke
et al.
Article dans une revue
hal-01281832
v1
|
|
A call for benchmarking transposable element annotation methods.
Douglas R Hoen
,
Glenn Hickey
,
Guillaume Bourque
,
Josep Casacuberta
,
Richard Cordaux
et al.
Article dans une revue
hal-01204840
v1
|
|
The genome of the stress-tolerant wild tomato species Solanum pennellii
Anthony Bolger
,
Federico Scossa
,
Marie E Bolger
,
Christa Lanz
,
Florian Maumus
et al.
Article dans une revue
hal-01204066
v1
|
|
Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution
Andrew D W Geering
,
Florian Maumus
,
Dario Copetti
,
Nathalie Choisne
,
Derrick J Zwickl
et al.
Article dans une revue
hal-02631214
v1
|
|
Ancestral repeats have shaped epigenome and genome composition for millions of years in<em> Arabidopsis thaliana</em>
Florian Maumus
,
Hadi Quesneville
Article dans une revue
hal-02633174
v1
|
|
Plant genomes enclose footprints of past infections by giant virus relatives
Florian Maumus
,
Aline Epert
,
Fabien Nogué
,
Guillaume Blanc
Article dans une revue
hal-01204072
v1
|
|
Deep Investigation of Arabidopsis thaliana Junk DNA Reveals a Continuum between Repetitive Elements and Genomic Dark Matter
Florian Maumus
,
Hadi Quesneville
Article dans une revue
hal-02636753
v1
|
|
Global discovery and characterization of small non-coding RNAs in marine microalgae
Sara López-Gomollón
,
Matthew Beckers
,
Tina Rathjen
,
Simon Moxon
,
Florian Maumus
et al.
Article dans une revue
hal-02640460
v1
|
|
Pan genome of the phytoplankton Emiliania underpins its global distribution
Betsy A Read
,
Jessica Kegel
,
Mary J Klute
,
Alan Kuo
,
Stephane C Lefebvre
et al.
Article dans une revue
hal-01074841
v1
|
|
The Capsella rubella genome and the genomic consequences of rapid mating system evolution
Tanja Slotte
,
Khaled M Hazzouri
,
J Arvid Agren
,
Daniel Koenig
,
Florian Maumus
et al.
Article dans une revue
hal-02650401
v1
|
|
Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum
Alaguraj Veluchamy
,
Xin Lin
,
Florian Maumus
,
Maximo Rivarola
,
Jaysheel Bhavsar
et al.
Article dans une revue
hal-01545322
v1
|
|
The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium
J. Mark Cock
,
Lieven Sterck
,
Sophia Ahmed
,
Andrew E. Allen
,
Grigoris Amoutzias
et al.
Article dans une revue
hal-02649287
v1
|
|
Highly Dynamic Exon Shuffling in Candidate Pathogen Receptors ... What if Brown Algae Were Capable of Adaptive Immunity?
Antonios Zambounis
,
Marek Elias
,
Lieven Sterck
,
Florian Maumus
,
Claire M. M. Gachon
Article dans une revue
hal-02647640
v1
|
|
The gypsy database (GyDB) of mobile genetic elements: release 2.0
Carlos Llorens
,
Ricardo Futami
,
Laura Covelli
,
Laura Dominguez-Escriba
,
Jose M. Viu
et al.
Article dans une revue
hal-02648997
v1
|
|
Stemming epigenetics in marine stramenopiles
Florian Maumus
,
Pablo Rabinowicz
,
Chris Bowler
,
Máximo Rivarola
Current Genomics, 2011, 12 (5), pp.357-370
Article dans une revue
hal-02644011
v1
|
|
The $Ectocarpus$ genome and the independent evolution of multicellularity in brown algae
J. Mark Cock
,
Lieven Sterck
,
Pierre Rouzé
,
Delphine Scornet
,
Andrew E. Allen
et al.
Article dans une revue
cea-00906990
v1
|
|
The $Phaeodactylum$ genome reveals the evolutionary history of diatom genomes
Chris Bowler
,
Andrew E. Allen
,
Jonathan H. Badger
,
Jane Grimwood
,
Kamel Jabbari
et al.
Article dans une revue
cea-00910244
v1
|