Florian Maumus

Publications

Article dans une revue (63)

A Super-Pangenome for Cultivated Citrus Reveals Evolutive Features During the Allopatric Phase of Their Reticulate Evolution Gaetan Droc,Delphine Giraud,Caroline Belser,Karine Labadie,Simone Dupratet al. Plant Biotechnology Journal, 2026, 24 (5), pp.3345-3367. ⟨10.1111/pbi.70553⟩ Article dans une revue hal-05247455v1
Genome-resolved biogeography of Phaeocystales, cosmopolitan bloom-forming algae Zoltán Füssy,Robert Lampe,Kevin Arrigo,Kerrie Barry,Margaret Brisbinet al. Nature Communications, 2025, 16 (1), pp.8559. ⟨10.1038/s41467-025-63565-1⟩ Article dans une revue hal-05292826v1
Construction of a comprehensive library of repeated sequences for the annotation of Citrus genomes Delphine Giraud,Nathalie Choisne,Marilyne Summo,Stéphanie Sidibe-Bocs,Héléna Vassilieffet al. BMC Genomic Data, 2025, 26, pp.30. ⟨10.1186/s12863-025-01321-6⟩ Article dans une revue hal-05041052v1
Multiple Horizontal Transfers of Immune Genes Between Distantly Related Teleost Fishes Maxime Policarpo,Walter Salzburger,Florian Maumus,Clément Gilbert Molecular Biology and Evolution, 2025, 42 (5), pp.msaf107. ⟨10.1093/molbev/msaf107⟩ Article dans une revue hal-05373688v1
Genome-resolved biogeography of Phaeocystales, cosmopolitan bloom-forming algae Andrew Allen,Zoltán Füssy,Robert Lampe,Kevin Arrigo,Kerrie Barryet al. Research Square - Preprint, 2024, ⟨10.21203/rs.3.rs-4339559/v1⟩ Article dans une revue hal-04908358v1
The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics Ann Mc Cartney,Giulio Formenti,Alice Mouton,Diego de Panis,Luísa Marinset al. npj Biodiversity, 2024, 3 (1), pp.28. ⟨10.1038/s44185-024-00054-6⟩ Article dans une revue hal-05248491v1
Endogenous caulimovirids: Fossils, zombies, and living in plant genomes Héléna Vassilieff,Andrew Geering,Nathalie Choisne,Pierre-Yves Teycheney,Florian Maumus Biomolecules, 2023, 13 (7), pp.1069. ⟨10.3390/biom13071069⟩ Article dans une revue hal-04152917v1
Sidestepping Darwin: horizontal gene transfer from plants to insects Clément Gilbert,Florian Maumus Current Opinion in Insect Science, 2023, 57, pp.101035. ⟨10.1016/j.cois.2023.101035⟩ Article dans une revue hal-04072018v1
How genomics can help biodiversity conservation Kathrin Theissinger,Carlos Fernandes,Giulio Formenti,Iliana Bista,Paul Berget al. Trends in Genetics, 2023, ⟨10.1016/j.tig.2023.01.005⟩ Article dans une revue hal-04082874v1
A chromosome-scale assembly of the quinoa genome provides insights into the structure and dynamics of its subgenomes Elodie Rey,Peter Maughan,Florian Maumus,Daniel Lewis,Leanne Wilsonet al. Communications Biology, 2023, 6 (1), pp.1263. ⟨10.1038/s42003-023-05613-4⟩ Article dans une revue hal-04344166v1
Multiple Horizontal Acquisitions of Plant Genes in the Whitefly Bemisia tabaci Clément Gilbert,Florian Maumus Genome Biology and Evolution, 2022, 14 (10), ⟨10.1093/gbe/evac141⟩ Article dans une revue hal-03846467v1
The era of reference genomes in conservation genomics Giulio Formenti,Kathrin Theissinger,Carlos Fernandes,Iliana Bista,Aureliano Bombarelyet al. Trends in Ecology & Evolution, 2022, 37 (3), pp.197-202. ⟨10.1016/j.tree.2021.11.008⟩ Article dans une revue hal-03854324v1
CAULIFINDER: a pipeline for the automated detection and annotation of caulimovirid endogenous viral elements in plant genomes Héléna Vassilieff,Sana Haddad,Véronique Jamilloux,Nathalie Choisne,Vikas Sharmaet al. Mobile DNA, 2022, 13, pp.31. ⟨10.1186/s13100-022-00288-w⟩ Article dans une revue hal-03883611v1
Recent Acquisition of Functional m6A RNA Demethylase Domain in Orchid Ty3/Gypsy Elements Luis Alvarado-Marchena,Mireya Martínez-Pérez,Frederic Aparicio,Vicente Pallas,Florian Maumus Frontiers in Plant Science, 2022, 13, ⟨10.3389/fpls.2022.939843⟩ Article dans une revue hal-03717458v1
Insertion of Badnaviral DNA in the Late Blight Resistance Gene (R1a) of Brinjal Eggplant (Solanum melongena) Saad Serfraz,Vikas Sharma,Florian Maumus,Xavier Aubriot,Andrew D W Geeringet al. Frontiers in Plant Science, 2021, 12, ⟨10.3389/fpls.2021.683681⟩ Article dans une revue hal-03328857v1
Aethionema arabicum genome annotation using PacBio full‐length transcripts provides a valuable resource for seed dormancy and Brassicaceae evolution research Noe Fernandez‐pozo,Timo Metz,Jake Chandler,Lydia Gramzow,Zsuzsanna Méraiet al. The Plant Journal, 2021, pp.1-19. ⟨10.1111/tpj.15161⟩ Article dans une revue hal-03135342v1
Gene-rich UV sex chromosomes harbor conserved regulators of sexual development Sarah Carey,Jerry Jenkins,John Lovell,Florian Maumus,Avinash Sreedasyamet al. Science Advances , 2021, 7 (27), pp.1-12. ⟨10.1126/sciadv.abh2488⟩ Article dans une revue hal-03283299v1
Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp Sarah Farhat,Phuong Le,Ehsan Kayal,Benjamin Noel,Estelle Bigeardet al. BMC Biology, 2021, 19 (1), ⟨10.1186/s12915-020-00927-9⟩ Article dans une revue hal-03114990v1
Current status of the multinational Arabidopsis community Keith Adams,Wagner Araújo,Sebastien Aubourg,Sacha Baginsky,Erica Bakkeret al. Plant Direct, 2020, 4 (7), pp.e00248. ⟨10.1002/pld3.248⟩ Article dans une revue hal-02927028v1
Large-scale survey reveals pervasiveness and potential function of endogenous geminiviral sequences in plants Vikas Sharma,Pierre Lefeuvre,Philippe Roumagnac,Denis Filloux,Pierre-Yves Teycheneyet al. Virus Evolution, 2020, 6 (2), ⟨10.1093/ve/veaa071⟩ Article dans une revue hal-02946712v1
Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato Michael Alonge,Xingang Wang,Matthias Benoit,Sebastian Soyk,Lara Pereiraet al. Cell, 2020, 182 (1), pp.145-161.e23. ⟨10.1016/j.cell.2020.05.021⟩ Article dans une revue hal-02927024v1
Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest Michael Sparks,Raman Bansal,Joshua Benoit,Michael Blackburn,Hsu Chaoet al. BMC Genomics, 2020, 21 (1), ⟨10.1186/s12864-020-6510-7⟩ Article dans une revue hal-02927020v1
Differential retention of transposable element-derived sequences in outcrossing Arabidopsis genomes Sylvain Legrand,Thibault Caron,Florian Maumus,Sol Schvartzman,Leandro Quadranaet al. Mobile DNA, 2019, 10 (1), pp.1-17. ⟨10.1186/s13100-019-0171-6⟩ Article dans une revue hal-02265374v1
RepetDB: a unified resource for transposable element references Joëlle Amselem,Guillaume Cornut,Nathalie Choisne,Michael Alaux,Françoise Alfama Depauwet al. Mobile DNA, 2019, 10, pp.1-8. ⟨10.1186/s13100-019-0150-y⟩ Article dans une revue hal-02625212v1
Tracheophyte genomes keep track of the deep evolution of the &lt;em&gt;Caulimoviridae&lt;/em&gt; Seydina Issa Diop,Andrew D. W. Geering,Françoise Alfama-Depauw,Mikaël Loaec,Pierre-Yves Teycheneyet al. Scientific Reports, 2018, 8, pp.1-9. ⟨10.1038/s41598-017-16399-x⟩ Article dans une revue hal-02626005v1
Oak genome reveals facets of long lifespan Christophe Plomion,Jean-Marc Aury,Joelle Amselem,Thibault Leroy,Florent Muratet al. Nature Plants, 2018, 4 (7), pp.440-452. ⟨10.1038/s41477-018-0172-3⟩ Article dans une revue hal-01820559v1
Redistribution of CHH Methylation and Small Interfering RNAs across the Genome of Tomato ddm1 Mutants Shira Corem,Adi Doron Faigenboim,Ophélie Jouffroy,Florian Maumus,Tzahi Araziet al. The Plant cell, 2018, 30 (7), pp.1628-1644. ⟨10.1105/tpc.18.00167⟩ Article dans une revue hal-02628646v1
The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution Daniel Lang,Kristian Ullrich,Florent Murat,Jörg Fuchs,Jerry Jenkinset al. The Plant Journal, 2018, 93 (3), pp.515 - 533. ⟨10.1111/tpj.13801⟩ Article dans une revue hal-01760352v1
The &lt;em&gt;Chara&lt;/em&gt; genome Tomoaki Nishiyama,Hidetoshi Sakayama,Jan de Vries,Henrik Buschmann,Denis Saint-Marcouxet al. Cell, 2018, 174 (2), pp.448-464.e24. ⟨10.1016/j.cell.2018.06.033⟩ Article dans une revue hal-02624417v1
Integrative analysis of large scale transcriptome data draws a comprehensive landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms Achal Rastogi,Uma Maheswari,Richard Dorrell,Fabio Rocha Jimenez Vieira,Florian Maumuset al. Scientific Reports, 2018, 8 (1), pp.1-14. ⟨10.1038/s41598-018-23106-x⟩ Article dans une revue hal-02366536v1
Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species Thomas C. Mathers,Yazhou Chen,Gemy Kaithakottil,Fabrice Legeai,Sam T. Mugfordet al. Genome Biology, 2017, 18 (1), pp.27. ⟨10.1186/s13059-016-1145-3⟩ Article dans une revue hal-01500475v1
Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges Anaïs Gouin,Anthony Bretaudeau,Kiwoong Nam,Sylvie Gimenez,Jean-Marc Auryet al. Scientific Reports, 2017, 7 (1), pp.1-12. ⟨10.1038/s41598-017-10461-4⟩ Article dans une revue hal-01633879v1
De novo assembly of a new Solanum pennellii accession using nanopore sequencing Maximilian H.-W. Schmidt,Alexander Vogel,Alisandra K. Denton,Benjamin Istace,Alexandra Wormitet al. The Plant cell, 2017, 29, pp.2336-2348. ⟨10.1105/tpc.17.00521⟩ Article dans une revue hal-02625700v1
Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus. Thomas Mock,Robert P Otillar,Jan Strauss,Mark Mcmullan,Pirita Paajanenet al. Nature, 2017, 541, pp.536-540. ⟨10.1038/nature20803⟩ Article dans une revue hal-01587937v1
Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom Swaraj Basu,Shrikant Patil,Daniel Mapleson,Monia Teresa Russo,Laura Vitaleet al. New Phytologist, 2017, 215 (1), pp.140-156. ⟨10.1111/nph.14557⟩ Article dans une revue hal-01607004v1
Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species Thomas C. Mathers,Yazhou Chen,Gemy Kaithakottil,Fabrice Legeai,Sam T. Mugfordet al. Genome Biology, 2017, 18 (1), pp.63. ⟨10.1186/s13059-017-1202-6⟩ Article dans une revue hal-01588181v1
The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea Jeanine L. Olsen,Pierre Rouzé,Bram Verhelst,Yao-Cheng Y.-C. Lin,Till Bayeret al. Nature, 2016, 530 (7590), pp.331-335. ⟨10.1038/nature16548⟩ Article dans une revue hal-01289099v1
Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening Ophélie Jouffroy,Surya Saha,Lukas Mueller,Hadi Quesneville,Florian Maumus BMC Genomics, 2016, 17 (1), pp.1-15. ⟨10.1186/s12864-016-2980-z⟩ Article dans une revue hal-02631886v1
Study of gene trafficking between Acanthamoeba and giant viruses suggests an undiscovered family of Amoeba-infecting viruses Florian Maumus,Guillaume Blanc Genome Biology and Evolution, 2016, 8 (11), pp.3351-3363. ⟨10.1093/gbe/evw260⟩ Article dans une revue hal-01604735v1
Erratum to :&quot;Understanding Brassicaceae evolution through ancestral genome reconstruction&quot; (vol 16, 262, 2015) Florent Murat,Alexandra Louis,Florian Maumus,Alix Armero,Richard Cookeet al. Genome Biology, 2016, 17 (64), ⟨10.1186/s13059-016-0887-2⟩ Article dans une revue hal-02630062v1
Giant viruses at the core of microscopic wars with global impacts Adrien Villain,Lucie Gallot-Lavallee,Guillaume Blanc,Florian Maumus Current Opinion in Virology, 2016, 17, pp.130-137. ⟨10.1016/j.coviro.2016.03.007⟩ Article dans une revue istex hal-02639930v1
Impact and insights from ancient repetitive elements in plant genomes Florian Maumus,Hadi Quesneville Current Opinion in Plant Biology, 2016, 30, pp.41-46. ⟨10.1016/j.pbi.2016.01.003⟩ Article dans une revue istex hal-02638420v1
Impact of transposable elements on insect genomes and biology Florian Maumus,Anna-Sophie Fiston-Lavier,Hadi Quesneville Current Opinion in Insect Science, 2015, 7, pp.30-36. ⟨10.1016/j.cois.2015.01.001⟩ Article dans une revue istex hal-02640108v1
A new approach for annotation of transposable elements using small RNA mapping. Moaine El Baidouri,Kyung Do Kim,Brian Abernathy,Siwaret Arikit,Florian Maumuset al. Nucleic Acids Research, 2015, 43 (13), pp.e84. ⟨10.1093/nar/gkv257⟩ Article dans une revue hal-01215276v1
Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation Eva-Maria Willing,Vimal Rawat,Terezie Mandáková,Florian Maumus,Geo Velikkakam Jameset al. Nature Plants, 2015, 1 (2), pp.14023-14028. ⟨10.1038/nplants.2014.23⟩ Article dans une revue hal-01179557v1
Provirophages in the Bigelowiella genome bear testimony to past encounters with giant viruses Guillaume Blanc,Lucie Gallot-Lavallee,Florian Maumus Proceedings of the National Academy of Sciences of the United States of America, 2015, 112 (38), pp.E5318-E5326. ⟨10.1073/pnas.1506469112⟩ Article dans une revue hal-02639645v1
Understanding Brassicaceae evolution through ancestral genome reconstruction Florent Murat,Alexandra Louis,Florian Maumus,Alix Armero Villanueva,Richard Cookeet al. Genome Biology, 2015, 16 (262), ⟨10.1186/s13059-015-0814-y⟩ Article dans une revue hal-01281832v1
The genome of the stress-tolerant wild tomato species Solanum pennellii Anthony Bolger,Federico Scossa,Marie E Bolger,Christa Lanz,Florian Maumuset al. Nature Genetics, 2014, 46 (9), pp.1034-1038. ⟨10.1038/ng.3046⟩ Article dans une revue hal-01204066v1
A call for benchmarking transposable element annotation methods. Douglas R Hoen,Glenn Hickey,Guillaume Bourque,Josep Casacuberta,Richard Cordauxet al. Mobile DNA, 2014, 6, pp.13. ⟨10.1186/s13100-015-0044-6⟩ Article dans une revue hal-01204840v1
Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution Andrew D W Geering,Florian Maumus,Dario Copetti,Nathalie Choisne,Derrick J Zwicklet al. Nature Communications, 2014, 5, ⟨10.1038/ncomms6269⟩ Article dans une revue hal-02631214v1
Ancestral repeats have shaped epigenome and genome composition for millions of years in&lt;em&gt; Arabidopsis thaliana&lt;/em&gt; Florian Maumus,Hadi Quesneville Nature Communications, 2014, 5, 9 p. ⟨10.1038/ncomms5104⟩ Article dans une revue hal-02633174v1
Plant genomes enclose footprints of past infections by giant virus relatives Florian Maumus,Aline Epert,Fabien Nogué,Guillaume Blanc Nature Communications, 2014, 5, ⟨10.1038/ncomms5268⟩ Article dans une revue hal-01204072v1
Global discovery and characterization of small non-coding RNAs in marine microalgae Sara López-Gomollón,Matthew Beckers,Tina Rathjen,Simon Moxon,Florian Maumuset al. BMC Genomics, 2014, 15, ⟨10.1186/1471-2164-15-697⟩ Article dans une revue hal-02640460v1
Deep Investigation of Arabidopsis thaliana Junk DNA Reveals a Continuum between Repetitive Elements and Genomic Dark Matter Florian Maumus,Hadi Quesneville PLoS ONE, 2014, 9 (4), ⟨10.1371/journal.pone.0094101⟩ Article dans une revue hal-02636753v1
The Capsella rubella genome and the genomic consequences of rapid mating system evolution Tanja Slotte,Khaled M Hazzouri,J Arvid Agren,Daniel Koenig,Florian Maumuset al. Nature Genetics, 2013, 45 (7), pp.831-835. ⟨10.1038/ng.2669⟩ Article dans une revue hal-02650401v1
Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum Alaguraj Veluchamy,Xin Lin,Florian Maumus,Maximo Rivarola,Jaysheel Bhavsaret al. Nature Communications, 2013, 4, pp.2091. ⟨10.1038/ncomms3091⟩ Article dans une revue hal-01545322v1
Pan genome of the phytoplankton Emiliania underpins its global distribution Betsy A Read,Jessica Kegel,Mary J Klute,Alan Kuo,Stephane C Lefebvreet al. Nature, 2013, 499 (7457), pp.209-213. ⟨10.1038/nature12221⟩ Article dans une revue hal-01074841v1
The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium J. Mark Cock,Lieven Sterck,Sophia Ahmed,Andrew E. Allen,Grigoris Amoutziaset al. Advances in Botanical Research, 2012, 64, pp.141 - 184. ⟨10.1016/B978-0-12-391499-6.00005-0⟩ Article dans une revue hal-02649287v1
Highly Dynamic Exon Shuffling in Candidate Pathogen Receptors ... What if Brown Algae Were Capable of Adaptive Immunity? Antonios Zambounis,Marek Elias,Lieven Sterck,Florian Maumus,Claire M. M. Gachon Molecular Biology and Evolution, 2012, 29 (4), pp.1263 - 1276. ⟨10.1093/molbev/msr296⟩ Article dans une revue hal-02647640v1
The gypsy database (GyDB) of mobile genetic elements: release 2.0 Carlos Llorens,Ricardo Futami,Laura Covelli,Laura Dominguez-Escriba,Jose M. Viuet al. Nucleic Acids Research, 2011, 39 (S1), pp.D70-D74. ⟨10.1093/nar/gkq1061⟩ Article dans une revue hal-02648997v1
Stemming epigenetics in marine stramenopiles Florian Maumus,Pablo Rabinowicz,Chris Bowler,Máximo Rivarola Current Genomics, 2011, 12 (5), pp.357-370 Article dans une revue hal-02644011v1
The $Ectocarpus$ genome and the independent evolution of multicellularity in brown algae J. Mark Cock,Lieven Sterck,Pierre Rouzé,Delphine Scornet,Andrew E. Allenet al. Nature, 2010, 465 (7298), pp.617-621. ⟨10.1038/nature09016⟩ Article dans une revue cea-00906990v1
The $Phaeodactylum$ genome reveals the evolutionary history of diatom genomes Chris Bowler,Andrew E. Allen,Jonathan H. Badger,Jane Grimwood,Kamel Jabbariet al. Nature, 2008, 456 (7410), pp.239-244. ⟨10.1038/nature07410⟩ Article dans une revue cea-00910244v1

Communication dans un congrès (7)

Evolutionary history of endogenous viral elements (EVEs) in Citrus species and their putative involvement in genome structure and functions D. Giraud,N. Choisne,S. Sidibe-Bocs,H. Vassilieff,G. Costantinoet al. XV International Citrus Congress (ICC2024), International Society for Horticultural Science (ISHS), Nov 2024, Jeju, South Korea. pp.63-71, ⟨10.17660/ActaHortic.2026.1448.7⟩ Communication dans un congrès hal-05601959v1
Contribution of Transposable Elements to Structural Variation and Phenotypic Adaptation in Tomato Matthias Benoit,Michael Alonge,Xingang Wang,Florian Maumus,Hajk-Georg Drostet al. Epigenetic Mechanisms of Crop Adaptation to Climate Change (EPI-CATCH), COST EPI-CATCH, Jul 2021, Virtual conference, United States Communication dans un congrès hal-05163380v1
Contribution of Transposons to Structural Variation and Phenotypic Diversity in Tomato Matthias Benoit,Michael Alonge,Xingang Wang,Florian Maumus,Hajk-Georg Drostet al. EPIPLANT 2021, EPIPLANT GDR, Feb 2021, Virtual conference, France Communication dans un congrès hal-05163401v1
Contribution of Transposons to Structural Variation and Phenotypic Diversity in Tomato Matthias Benoit,Michael Alonge,Xingang Wang,Florian Maumus,Hajk-Georg Drostet al. SOL International Meeting, Nov 2020, Virtual conference, United States Communication dans un congrès hal-05163426v1
Hidden diversity of endogenous geminiviral sequences across plant genomes and transcriptomes Vikas Sharma,Philippe Roumagnac,Denis Filloux,Pierre Lefeuvre,Pierre-Yves Teycheneyet al. International Geminivirus Symposium, University of California, Nov 2019, Davis, United States. pp.58-58 Communication dans un congrès hal-05174664v1
Exploring the role of Florendovirus in plant biology Saad Serfraz,V. Sharma,Andrew Geering,Florian Maumus,Pierre-Yves Teycheney Caribbean Science and Innovation Meeting 2019, Oct 2019, Pointe-à-Pitre (Guadeloupe), Guadeloupe Communication dans un congrès hal-02575469v1
Nature, nurture and the structure of macroalgal genomes J. Mark Cock,Jonas Collen,Lieven Sterck,Pierre Rouzé,Delphine Scornetet al. 5. European Phycological Congress, Sep 2011, Rhodes, Greece Communication dans un congrès hal-02749757v1

Chapitre d'ouvrage (1)

Haslea ostrearia-like Diatoms: Biodiversity out of the Blue Romain Gastineau,Nikolai Davidovich,Gert Hansen,Jan Rines,Angela Wulffet al. Sea Plants, 71, Elsevier Ltd, pp.441-465, 2014, Advances in Botanical Research, 978-0-12-408062-1. ⟨10.1016/B978-0-12-408062-1.00015-9⟩ Chapitre d'ouvrage hal-02801766v1

Pré-publication, Document de travail (4)

The diversity and host range of endogenous caulimovirids illuminate the ancient origin and early evolution of the Caulimoviridae Héléna Vassilieff,Saad Serfraz,Nathalie Choisne,Andrew D.W. Geering,Pierre Lefeuvreet al. 2025 Pré-publication, Document de travail hal-05247452v1
Entry and exit of Fragilariopsis cylindrus diatoms from the polar night: evidence for chromatin-mediated genome control Nathalie Joli,Clara Bourbousse,Basile Leduque,Leïla Tirichine,Juliette Laudeet al. 2025 Pré-publication, Document de travail hal-05397446v1
The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics Ann M Mc Cartney,Giulio Formenti,Alice Mouton,Diego de Panis,Luísa S Marinset al. 2024 Pré-publication, Document de travail hal-04406124v1
A clonally reproducing generalist aphid pest colonises diverse host plants by rapid transcriptional plasticity of duplicated gene clusters Thomas Mathers,Yazhou Chen,Gemy Kaithakottil,Fabrice Legeai,Sam Mugfordet al. 2020 Pré-publication, Document de travail (preprint/prepublication) hal-02936181v1

Thèse (1)

“Transcriptional and Epigenetic regulation in the marine diatom Phaeodactylum tricornutum” Florian Maumus Biochemistry [q-bio.BM]. Ecole Normale Supérieure de Paris - ENS Paris, 2009. English. ⟨NNT : ⟩ Thèse tel-00475588v1

HDR (1)

Evolution and Impact of Transposable Elements and Viruses Florian Maumus Life Sciences [q-bio]. Université paris saclay, 2018 HDR tel-04443412v1

Logiciel (2)

CAULIFINDER Florian Maumus,Véronique Jamilloux,Héléna Vassilieff,Sana Haddad 2023, ⟨swh:1:dir:847d2324e957f8b013b184bc7e6f12ece8528c04;origin=https://hal.archives-ouvertes.fr/hal-03906699;visit=swh:1:snp:e421e307ac9e1511e9e38b6f711c136c654d4b7b;anchor=swh:1:rel:b66fda6313cdad30b851aba54df98fa7e88721e3;path=/⟩ Logiciel hal-03906699v1
REPET v3.0 Véronique Jamilloux,Françoise Alfama-Depauw,Johann Confais,Mariène Wan,Agnes Baudet al. 2019 Logiciel hal-02790461v1