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Florian Mueller



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Mitotic bookmarking redundancy by nuclear receptors in pluripotent cells

Almira Chervova , Amandine Molliex , H. Irem Baymaz , Rémi-Xavier Coux , Thaleia Papadopoulou
Nature Structural and Molecular Biology, 2024, ⟨10.1038/s41594-023-01195-1⟩
Journal articles hal-04434602v1
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A specific molecular signature in SARS-CoV-2 infected kidney biopsies

Pierre Isnard , Paul Vergnaud , Serge Garbay , Matthieu Jamme , Maeva Eloudzeri
JCI Insight, inPress, pp.e165192. ⟨10.1172/jci.insight.165192⟩
Journal articles pasteur-04004769v1
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Excessive self-grooming, gene dysregulation and imbalance between the striosome and matrix compartments in the striatum of Shank3 mutant mice

Allain-Thibeault Ferhat , Elisabeth Verpy , Anne Biton , Benoît Forget , Fabrice de Chaumont
Frontiers in Molecular Neuroscience, 2023, 16, pp.1139118. ⟨10.3389/fnmol.2023.1139118⟩
Journal articles hal-04241910v1
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An interactive murine single-cell atlas of the lung responses to radiation injury

Sandra Curras-Alonso , Juliette Soulier , Thomas Defard , Christian Weber , Sophie Heinrich
Nature Communications, 2023, 14 (1), pp.2445. ⟨10.1038/s41467-023-38134-z⟩
Journal articles hal-04092147v1
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HT-smFISH: a cost effective and flexible workflow for high-throughput single molecule RNA imaging

Adham Safieddine , Emeline Coleno , Frederic Lionneton , Abdel-Meneem Traboulsi , Soha Salloum
Nature Protocols, 2023, 18, pp.157-187. ⟨10.1038/s41596-022-00750-2⟩
Journal articles hal-03834928v1
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piRNAs initiate transcriptional silencing of spermatogenic genes during C. elegans germline development

Eric Cornes , Loan Bourdon , Meetali Singh , Florian Mueller , Piergiuseppe Quarato
Developmental Cell, 2022, 57 (2), pp.180-196.e7. ⟨10.1016/j.devcel.2021.11.025⟩
Journal articles pasteur-03514345v1
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FISH-quant v2: a scalable and modular tool for smFISH image analysis

Arthur Imbert , Wei Ouyang , Adham Safieddine , Emeline Coleno , Christophe Zimmer
RNA, 2022, 28 (6), pp.786-795. ⟨10.1261/rna.079073.121⟩
Journal articles hal-03942851v2
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Sensitive visualization of SARS-CoV-2 RNA with CoronaFISH

Elena Rensen , Stefano Pietropaoli , Florian Mueller , Christian Weber , Sylvie Souquere
Life Science Alliance, 2022, 5 (4), pp.e202101124. ⟨10.26508/lsa.202101124⟩
Journal articles pasteur-03518024v2
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A choreography of centrosomal mRNAs reveals a conserved localization mechanism involving active polysome transport

Adham Safieddine , Emeline Coleno , Soha Salloum , Arthur Imbert , Abdel-Meneem Traboulsi
Nature Communications, 2021, 12 (1), pp.1352. ⟨10.1038/s41467-021-21585-7⟩
Journal articles hal-03014936v2

Spatial transcriptomics for respiratory research and medicine

Sandra Curras-Alonso , Juliette Soulier , Thomas Walter , Florian Mueller , Arturo Londoño-Vallejo
European Respiratory Journal, 2021, 58 (1), pp.2004314. ⟨10.1183/13993003.04314-2020⟩
Journal articles hal-03633353v1
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Germline inherited small RNAs facilitate the clearance of untranslated maternal mRNAs in C. elegans embryos

Piergiuseppe Quarato , Meetali Singh , Eric Cornes , Blaise Maxime Li , Loan Bourdon
Nature Communications, 2021, 12 (1), pp.1441. ⟨10.1038/s41467-021-21691-6⟩
Journal articles hal-03163367v1
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Live single-cell transcriptional dynamics via RNA labelling during the phosphate response in plants

Sahar Hani , Laura Cuyas , Pascale David , David Secco , James Whelan
Nature Plants, 2021, 7 (8), pp.1050-1064. ⟨10.1038/s41477-021-00981-3⟩
Journal articles hal-03320179v1
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Clustering and reverse transcription of HIV‐1 genomes in nuclear niches of macrophages

Elena Rensen , Florian Mueller , Viviana Scoca , Jyotsana Parmar , Philippe Souque
EMBO Journal, 2021, 40 (1), pp.e105247. ⟨10.15252/embj.2020105247⟩
Journal articles pasteur-03088393v1
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The kinesin KIF1C transports APC-dependent mRNAs to cell protrusions

Xavier Pichon , Konstadinos Moissoglu , Emeline Coleno , Tianhong Wang , Arthur Imbert
RNA, 2021, pp.rna.078576.120. ⟨10.1261/rna.078576.120⟩
Journal articles hal-03371977v1
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Stochastic pausing at latent HIV-1 promoters generates transcriptional bursting

Katjana Tantale , Encar Garcia-Oliver , Marie-Cécile Robert , Adèle L’hostis , Yueyuxiao Yang
Nature Communications, 2021, 12 (1), pp.4503. ⟨10.1038/s41467-021-24462-5⟩
Journal articles hal-03382893v1

Spatial transcriptomics for respiratory research and medicine

Sandra Curras-Alonso , Juliette Soulier , Thomas Walter , Florian Mueller , Arturo Londoño-Vallejo
European Respiratory Journal, 2021, 58 (1), pp.2004314. ⟨10.1183/13993003.04314-2020⟩
Journal articles hal-03376218v1
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mRNA localization is linked to translation regulation in the Caenorhabditis elegans germ lineage

Dylan M Parker , Lindsay P Winkenbach , Samuel P Boyson , Matthew N Saxton , Camryn Daidone
Development (Cambridge, England), 2020, 147 (13), pp.dev186817. ⟨10.1242/dev.186817⟩
Journal articles pasteur-02559475v2
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Remodeling of the core leads HIV-1 pre-integration complex in the nucleus of human lymphocytes.

Guillermo Blanco-Rodriguez , Anastasia Gazi , Blandine Monel , Stella Frabetti , Viviana Scoca
Journal of Virology, 2020, [Epub ahead of print], pp.JVI.00135-20. ⟨10.1128/JVI.00135-20⟩
Journal articles pasteur-02548457v1
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Functional compensation precedes recovery of tissue mass following acute liver injury

Chad Walesky , Kellie Kolb , Carolyn Winston , Jake Henderson , Benjamin Kruft
Nature Communications, 2020, 11 (1), pp.5785. ⟨10.1038/s41467-020-19558-3⟩
Journal articles pasteur-03648876v1
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The molecular logic of Nanog-induced self-renewal in mouse embryonic stem cells

Victor Heurtier , Nick Owens , Inma González , Florian Mueller , Caroline Proux
Nature Communications, 2019, 10 (1), pp.1109. ⟨10.1038/s41467-019-09041-z⟩
Journal articles pasteur-02083187v1
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Co-translational assembly of mammalian nuclear multisubunit complexes

Ivanka Kamenova , Pooja Mukherjee , Sascha Conic , Florian Mueller , Farrah El-Saafin
Nature Communications, 2019, 10 (1), ⟨10.1038/s41467-019-09749-y⟩
Journal articles hal-02130219v1
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Visualization of Arenavirus RNA Species in Individual Cells by Single-Molecule Fluorescence In Situ Hybridization Suggests a Model of Cyclical Infection and Clearance during Persistence

Benjamin R King , Aubin Samacoits , Philip L Eisenhauer , Christopher M. Ziegler , Emily A Bruce
Journal of Virology, 2018, 92 (12), pp.e2241-17. ⟨10.1128/JVI.02241-17⟩
Journal articles pasteur-02075021v1
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A single-molecule view of transcription reveals convoys of RNA polymerases and multi-scale bursting

Katjana Tantale , Florian Müller , Alja Kozulic-Pirher , Annick Lesne , Jean-Marc Victor
Nature Communications, 2016, 7, pp.12248. ⟨10.1038/ncomms12248⟩
Journal articles pasteur-01622688v1
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Single molecule tracking of Ace1p in Saccharomyces cerevisiae defines a characteristic residence time for non-specific interactions of transcription factors with chromatin

David A Ball , Gunjan D. Mehta , Ronit Salomon-Kent , Davide Mazza , Tatsuya Morisaki
Nucleic Acids Research, 2016, 44 (21), pp.e160. ⟨10.1093/nar/gkw744⟩
Journal articles pasteur-01622680v1
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Visualization of single endogenous polysomes reveals the dynamics of translation in live human cells

Xavier Pichon , Amandine Bastide , Adham Safieddine , Racha Chouaib , Aubin Samacoits
Journal of Cell Biology, 2016, 214 (6), pp.769 - 781. ⟨10.1083/jcb.201605024⟩
Journal articles pasteur-01622667v1
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Mitotic binding of Esrrb marks key regulatory regions of the pluripotency network

Nicola Festuccia , Agnès Dubois , Sandrine Vandormael-Pournin , Elena Gallego Tejeda , Adrien Mouren
Nature Cell Biology, 2016, 18 (11), pp.1139-1148. ⟨10.1038/ncb3418⟩
Journal articles pasteur-01972743v1
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smiFISH and FISH-quant - a flexible single RNA detection approach with super-resolution capability.

Nikolay Tsanov , Aubin Samacoits , Racha Chouaib , Abdel-Meneem Traboulsi , Thierry Gostan
Nucleic Acids Research, 2016, ⟨10.1093/nar/gkw784⟩
Journal articles pasteur-01375913v1
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Transcription Factors Modulate c-Fos Transcriptional Bursts

Adrien Senecal , Brian Munsky , Florence Proux , Nathalie Ly , Floriane E. Braye
Cell Reports, 2014, 8 (1), pp.75-83. ⟨10.1016/j.celrep.2014.05.053⟩
Journal articles hal-01312884v1
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FISH-quant: automatic counting of transcripts in 3D FISH images

Florian Mueller , Adrien Senecal , Katjana Tantale , Hervé Marie-Nelly , Nathalie Ly
Nature Methods, 2013, 10 (4), pp.277 - 278. ⟨10.1038/nmeth.2406⟩
Journal articles pasteur-01622707v1

A Deep Learning Approach To Identify MRNA Localization Patterns

Rémy Dubois , Arthur Imbert , Aubin Samacoits , Marion Peter , Edouard Bertrand
2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI), Apr 2019, Venice, France. pp.1386-1390, ⟨10.1109/ISBI.2019.8759235⟩
Conference papers hal-02343547v1
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Comprehensive Improvement of Industrial Energy Efficiency: Pilot Case in a European Rolling Stock Factory

Nils Weinert , Rafael Fink , Christian Mose , Friedrich Lupp , Florian Müller
IFIP International Conference on Advances in Production Management Systems (APMS), Sep 2014, Ajaccio, France. pp.334-341, ⟨10.1007/978-3-662-44736-9_41⟩
Conference papers hal-01387891v1