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            Chapter Three - Image processing approaches for microtubule remodeling quantification at the immunological synapse
        
                            
                                                                                                            Daniel Krentzel
                                                                ,
                                                                                                                                Maria Isabella Gariboldi
                                                                ,
                                                                                                                                Marie Juzans
                                                                ,
                                                                                                                                Marta Mastrogiovanni
                                                                ,
                                                                                                                                Florian Müller
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    hal-05091484
                                            v1
                                    
            
        
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            A point cloud segmentation framework for image-based spatial transcriptomics
        
                            
                                                                                                            Thomas Defard
                                                                ,
                                                                                                                                Hugo Laporte
                                                                ,
                                                                                                                                Mallick Ayan
                                                                ,
                                                                                                                                Juliette Soulier
                                                                ,
                                                                                                                                Sandra Curras-Alonso
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    hal-04874000
                                            v1
                                    
            
        
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            Mitotic bookmarking redundancy by nuclear receptors in pluripotent cells
        
                            
                                                                                                            Almira Chervova
                                                                ,
                                                                                                                                Amandine Molliex
                                                                ,
                                                                                                                                H. Irem Baymaz
                                                                ,
                                                                                                                                Rémi-Xavier Coux
                                                                ,
                                                                                                                                Thaleia Papadopoulou
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    hal-04434602
                                            v1
                                    
            
        
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            pyHiM: a new open-source, multi-platform software package for spatial genomics based on multiplexed DNA-FISH imaging
        
                            
                                                                                                            Xavier Devos
                                                                ,
                                                                                                                                Jean-Bernard Fiche
                                                                ,
                                                                                                                                Marion Bardou
                                                                ,
                                                                                                                                Olivier Messina
                                                                ,
                                                                                                                                Christophe Houbron
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    hal-04762623
                                            v1
                                    
            
        
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            A specific molecular signature in SARS-CoV-2 infected kidney biopsies
        
                            
                                                                                                            Pierre Isnard
                                                                ,
                                                                                                                                Paul Vergnaud
                                                                ,
                                                                                                                                Serge Garbay
                                                                ,
                                                                                                                                Matthieu Jamme
                                                                ,
                                                                                                                                Maeva Eloudzeri
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    pasteur-04004769
                                            v1
                                    
            
        
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            An interactive murine single-cell atlas of the lung responses to radiation injury
        
                            
                                                                                                            Sandra Curras-Alonso
                                                                ,
                                                                                                                                Juliette Soulier
                                                                ,
                                                                                                                                Thomas Defard
                                                                ,
                                                                                                                                Christian Weber
                                                                ,
                                                                                                                                Sophie Heinrich
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    hal-04092147
                                            v1
                                    
            
        
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            Excessive self-grooming, gene dysregulation and imbalance between the striosome and matrix compartments in the striatum of Shank3 mutant mice
        
                            
                                                                                                            Allain-Thibeault Ferhat
                                                                ,
                                                                                                                                Elisabeth Verpy
                                                                ,
                                                                                                                                Anne Biton
                                                                ,
                                                                                                                                Benoît Forget
                                                                ,
                                                                                                                                Fabrice de Chaumont
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    hal-04241910
                                            v2
                                    
            
        
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            HT-smFISH: a cost effective and flexible workflow for high-throughput single molecule RNA imaging
        
                            
                                                                                                            Adham Safieddine
                                                                ,
                                                                                                                                Emeline Coleno
                                                                ,
                                                                                                                                Frederic Lionneton
                                                                ,
                                                                                                                                Abdel-Meneem Traboulsi
                                                                ,
                                                                                                                                Soha Salloum
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    hal-03834928
                                            v1
                                    
            
        
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            piRNAs initiate transcriptional silencing of spermatogenic genes during C. elegans germline development
        
                            
                                                                                                            Eric Cornes
                                                                ,
                                                                                                                                Loan Bourdon
                                                                ,
                                                                                                                                Meetali Singh
                                                                ,
                                                                                                                                Florian Mueller
                                                                ,
                                                                                                                                Piergiuseppe Quarato
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    pasteur-03514345
                                            v1
                                    
            
        
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            FISH-quant v2: a scalable and modular tool for smFISH image analysis
        
                            
                                                                                                            Arthur Imbert
                                                                ,
                                                                                                                                Wei Ouyang
                                                                ,
                                                                                                                                Adham Safieddine
                                                                ,
                                                                                                                                Emeline Coleno
                                                                ,
                                                                                                                                Christophe Zimmer
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    hal-03942851
                                            v2
                                    
            
        
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            Sensitive visualization of SARS-CoV-2 RNA with CoronaFISH
        
                            
                                                                                                            Elena Rensen
                                                                ,
                                                                                                                                Stefano Pietropaoli
                                                                ,
                                                                                                                                Florian Mueller
                                                                ,
                                                                                                                                Christian Weber
                                                                ,
                                                                                                                                Sylvie Souquere
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    pasteur-03518024
                                            v2
                                    
            
        
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            Germline inherited small RNAs facilitate the clearance of untranslated maternal mRNAs in C. elegans embryos
        
                            
                                                                                                            Piergiuseppe Quarato
                                                                ,
                                                                                                                                Meetali Singh
                                                                ,
                                                                                                                                Eric Cornes
                                                                ,
                                                                                                                                Blaise Maxime Li
                                                                ,
                                                                                                                                Loan Bourdon
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    hal-03163367
                                            v1
                                    
            
        
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            Live single-cell transcriptional dynamics via RNA labelling during the phosphate response in plants
        
                            
                                                                                                            Sahar Hani
                                                                ,
                                                                                                                                Laura Cuyas
                                                                ,
                                                                                                                                Pascale David
                                                                ,
                                                                                                                                David Secco
                                                                ,
                                                                                                                                James Whelan
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    hal-03320179
                                            v1
                                    
            
        
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            A choreography of centrosomal mRNAs reveals a conserved localization mechanism involving active polysome transport
        
                            
                                                                                                            Adham Safieddine
                                                                ,
                                                                                                                                Emeline Coleno
                                                                ,
                                                                                                                                Soha Salloum
                                                                ,
                                                                                                                                Arthur Imbert
                                                                ,
                                                                                                                                Abdel-Meneem Traboulsi
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    hal-03014936
                                            v2
                                    
            
        
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            Spatial transcriptomics for respiratory research and medicine
        
                            
                                                                                                            Sandra Curras-Alonso
                                                                ,
                                                                                                                                Juliette Soulier
                                                                ,
                                                                                                                                Thomas Walter
                                                                ,
                                                                                                                                Florian Mueller
                                                                ,
                                                                                                                                Arturo Londoño-Vallejo
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    hal-03633353
                                            v1
                                    
            
        
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            The kinesin KIF1C transports APC-dependent mRNAs to cell protrusions
        
                            
                                                                                                            Xavier Pichon
                                                                ,
                                                                                                                                Konstadinos Moissoglu
                                                                ,
                                                                                                                                Emeline Coleno
                                                                ,
                                                                                                                                Tianhong Wang
                                                                ,
                                                                                                                                Arthur Imbert
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    hal-03371977
                                            v1
                                    
            
        
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    | 
        
                                                 
                        
                     
                                    
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            Spatial transcriptomics for respiratory research and medicine
        
                            
                                                                                                            Sandra Curras-Alonso
                                                                ,
                                                                                                                                Juliette Soulier
                                                                ,
                                                                                                                                Thomas Walter
                                                                ,
                                                                                                                                Florian Mueller
                                                                ,
                                                                                                                                Arturo Londoño-Vallejo
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    hal-03376218
                                            v1
                                    
            
        
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            Stochastic pausing at latent HIV-1 promoters generates transcriptional bursting
        
                            
                                                                                                            Katjana Tantale
                                                                ,
                                                                                                                                Encar Garcia-Oliver
                                                                ,
                                                                                                                                Marie-Cécile Robert
                                                                ,
                                                                                                                                Adèle L’hostis
                                                                ,
                                                                                                                                Yueyuxiao Yang
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    hal-03382893
                                            v1
                                    
            
        
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            Clustering and reverse transcription of HIV‐1 genomes in nuclear niches of macrophages
        
                            
                                                                                                            Elena Rensen
                                                                ,
                                                                                                                                Florian Mueller
                                                                ,
                                                                                                                                Viviana Scoca
                                                                ,
                                                                                                                                Jyotsana Parmar
                                                                ,
                                                                                                                                Philippe Souque
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    pasteur-03088393
                                            v1
                                    
            
        
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            mRNA localization is linked to translation regulation in the Caenorhabditis elegans germ lineage
        
                            
                                                                                                            Dylan M Parker
                                                                ,
                                                                                                                                Lindsay P Winkenbach
                                                                ,
                                                                                                                                Samuel P Boyson
                                                                ,
                                                                                                                                Matthew N Saxton
                                                                ,
                                                                                                                                Camryn Daidone
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    pasteur-02559475
                                            v2
                                    
            
        
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            Remodeling of the core leads HIV-1 pre-integration complex in the nucleus of human lymphocytes.
        
                            
                                                                                                            Guillermo Blanco-Rodriguez
                                                                ,
                                                                                                                                Anastasia Gazi
                                                                ,
                                                                                                                                Blandine Monel
                                                                ,
                                                                                                                                Stella Frabetti
                                                                ,
                                                                                                                                Viviana Scoca
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    pasteur-02548457
                                            v1
                                    
            
        
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            Functional compensation precedes recovery of tissue mass following acute liver injury
        
                            
                                                                                                            Chad Walesky
                                                                ,
                                                                                                                                Kellie Kolb
                                                                ,
                                                                                                                                Carolyn Winston
                                                                ,
                                                                                                                                Jake Henderson
                                                                ,
                                                                                                                                Benjamin Kruft
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    pasteur-03648876
                                            v1
                                    
            
        
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            Co-translational assembly of mammalian nuclear multisubunit complexes
        
                            
                                                                                                            Ivanka Kamenova
                                                                ,
                                                                                                                                Pooja Mukherjee
                                                                ,
                                                                                                                                Sascha Conic
                                                                ,
                                                                                                                                Florian Mueller
                                                                ,
                                                                                                                                Farrah El-Saafin
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    hal-02130219
                                            v1
                                    
            
        
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            The molecular logic of Nanog-induced self-renewal in mouse embryonic stem cells
        
                            
                                                                                                            Victor Heurtier
                                                                ,
                                                                                                                                Nick Owens
                                                                ,
                                                                                                                                Inma González
                                                                ,
                                                                                                                                Florian Mueller
                                                                ,
                                                                                                                                Caroline Proux
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    pasteur-02083187
                                            v1
                                    
            
        
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            Visualization of Arenavirus RNA Species in Individual Cells by Single-Molecule Fluorescence In Situ Hybridization Suggests a Model of Cyclical Infection and Clearance during Persistence
        
                            
                                                                                                            Benjamin R King
                                                                ,
                                                                                                                                Aubin Samacoits
                                                                ,
                                                                                                                                Philip L Eisenhauer
                                                                ,
                                                                                                                                Christopher M. Ziegler
                                                                ,
                                                                                                                                Emily A Bruce
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    pasteur-02075021
                                            v1
                                    
            
        
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            Single molecule tracking of Ace1p in Saccharomyces cerevisiae defines a characteristic residence time for non-specific interactions of transcription factors with chromatin
        
                            
                                                                                                            David A Ball
                                                                ,
                                                                                                                                Gunjan D. Mehta
                                                                ,
                                                                                                                                Ronit Salomon-Kent
                                                                ,
                                                                                                                                Davide Mazza
                                                                ,
                                                                                                                                Tatsuya Morisaki
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    pasteur-01622680
                                            v1
                                    
            
        
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            A single-molecule view of transcription reveals convoys of RNA polymerases and multi-scale bursting
        
                            
                                                                                                            Katjana Tantale
                                                                ,
                                                                                                                                Florian Müller
                                                                ,
                                                                                                                                Alja Kozulic-Pirher
                                                                ,
                                                                                                                                Annick Lesne
                                                                ,
                                                                                                                                Jean-Marc Victor
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    pasteur-01622688
                                            v1
                                    
            
        
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            Mitotic binding of Esrrb marks key regulatory regions of the pluripotency network
        
                            
                                                                                                            Nicola Festuccia
                                                                ,
                                                                                                                                Agnès Dubois
                                                                ,
                                                                                                                                Sandrine Vandormael-Pournin
                                                                ,
                                                                                                                                Elena Gallego Tejeda
                                                                ,
                                                                                                                                Adrien Mouren
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    pasteur-01972743
                                            v1
                                    
            
        
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            smiFISH and FISH-quant - a flexible single RNA detection approach with super-resolution capability.
        
                            
                                                                                                            Nikolay Tsanov
                                                                ,
                                                                                                                                Aubin Samacoits
                                                                ,
                                                                                                                                Racha Chouaib
                                                                ,
                                                                                                                                Abdel-Meneem Traboulsi
                                                                ,
                                                                                                                                Thierry Gostan
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    pasteur-01375913
                                            v1
                                    
            
        
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            Visualization of single endogenous polysomes reveals the dynamics of translation in live human cells
        
                            
                                                                                                            Xavier Pichon
                                                                ,
                                                                                                                                Amandine Bastide
                                                                ,
                                                                                                                                Adham Safieddine
                                                                ,
                                                                                                                                Racha Chouaib
                                                                ,
                                                                                                                                Aubin Samacoits
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    pasteur-01622667
                                            v1
                                    
            
        
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            Transcription Factors Modulate c-Fos Transcriptional Bursts
        
                            
                                                                                                            Adrien Senecal
                                                                ,
                                                                                                                                Brian Munsky
                                                                ,
                                                                                                                                Florence Proux
                                                                ,
                                                                                                                                Nathalie Ly
                                                                ,
                                                                                                                                Floriane E. Braye
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    hal-01312884
                                            v1
                                    
            
        
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            FISH-quant: automatic counting of transcripts in 3D FISH images
        
                            
                                                                                                            Florian Mueller
                                                                ,
                                                                                                                                Adrien Senecal
                                                                ,
                                                                                                                                Katjana Tantale
                                                                ,
                                                                                                                                Hervé Marie-Nelly
                                                                ,
                                                                                                                                Nathalie Ly
                                                                                            et al.
                            
                 
                            
                 Article dans une revue
                    
        
        
            
                
                    pasteur-01622707
                                            v1
                                    
            
        
     |