Franck Picard

80
Documents

Publications

Publications

kAOV : kernel hypothesis testing on general designs

Polina Arsenteva , Anthony Ozier-Lafontaine , Franck Picard , Bertrand Michel , Ghislain Durif
Logiciel hal-04894520 v1

pppca: Principal Component Analysis for replicated point process data.

Ghislain Durif , Franck Picard , Vincent Rivoirard , Angelina Roche , Victor Panaretos
Logiciel hal-04894590 v1

ktest : two-sample kernel testing

Anthony Ozier-Lafontaine , Polina Arsenteva , Ghislain Durif , Franck Picard
Logiciel hal-04547380 v1

scan10 : Nextflow pipeline for pre-processing and preliminary analysis of single cell RNA-seq data

Maxime Lepetit , Laurent Modolo , Franck Picard , Philippe Bertolino
Logiciel hal-04911084 v1
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Kernel-Based Testing for Single-Cell Differential Analysis

Anthony Ozier-Lafontaine , Camille Fourneaux , Ghislain Durif , Céline Vallot , Olivier Gandrillon et al.
Genome Biology, 2024, 114
Article dans une revue hal-04214858 v2
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Differentiation is accompanied by a progressive loss in transcriptional memory

Camille Fourneaux , Laëtitia Racine , Catherine Koering , Sébastien Dussurgey , Elodie Vallin et al.
BMC Biology, 2024, 22 (1), pp.58. ⟨10.1186/s12915-024-01846-9⟩
Article dans une revue hal-04734188 v1
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Minimax estimation of Functional Principal Components from noisy discretized functional data.

Ryad Belhakem , Franck F. Picard , Vincent Rivoirard , Angelina Roche
Scandinavian Journal of Statistics, 2024, ⟨10.1111/sjos.12719⟩
Article dans une revue hal-03395522 v1
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In silico single-cell metabolism analysis unravels a new transition stage of CD8 T cells 4 days post-infection

Christophe Arpin , Franck Picard , Olivier Gandrillon
ImmunoInformatics, 2023, 14, pp.100038. ⟨10.1101/2023.09.22.558248⟩
Article dans une revue hal-04566377 v1
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scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data

Maxime Lepetit , Mirela Diana Ilie , Marie Chanal , Gérald Raverot , Philippe Bertolino et al.
In Silico Biology, 2023, 15, pp.11 - 21. ⟨10.3233/isb-220252⟩
Article dans une revue hal-04305326 v1
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Dimeric G-quadruplex motifs-induced NFRs determine strong replication origins in vertebrates

Jérémy Poulet-Benedetti , Caroline Tonnerre-Doncarli , Anne-Laure Valton , Marc Laurent , Marie Gérard et al.
Nature Communications, 2023, 14 (1), pp.4843. ⟨10.1038/s41467-023-40441-4⟩
Article dans une revue hal-04184349 v1
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A derived ZW chromosome system in Amborella trichopoda, representing the sister lineage to all other extant flowering plants

Jos Käfer , Adam Bewick , Amélie Andres‐robin , Garance Lapetoule , Alex Harkess et al.
New Phytologist, 2022, 233, pp.1636-1642. ⟨10.1111/nph.17662⟩
Article dans une revue hal-03370272 v1
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Evidence for close molecular proximity between reverting and undifferentiated cells

Souad Zreika , Camille Fourneaux , Elodie Vallin , Laurent Modolo , Remi Seraphin et al.
BMC Biology, 2022, 20 (1), pp.155. ⟨10.1186/s12915-022-01363-7⟩
Article dans une revue hal-04134084 v1
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Uniform Deconvolution for Poisson Point Processes

Anna Bonnet , Claire Lacour , Franck Picard , Vincent Rivoirard
Journal of Machine Learning Research, 2022, 23 (194), pp.1--36
Article dans une revue hal-02964117 v2
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Detecting sex-linked genes using genotyped individuals sampled in natural populations

Jos Käfer , Nicolas Lartillot , Gabriel a B Marais , Franck Picard
Genetics, 2021, 218 (2), ⟨10.1093/genetics/iyab053⟩
Article dans une revue hal-03250679 v1
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Divergent clonal differentiation trajectories establish CD8+ memory T cell heterogeneity during acute viral infections in humans

Jeff Mold , Laurent Modolo , Joanna Hård , Margherita Zamboni , Anton J.M. Larsson et al.
Cell Reports, 2021, 35 (8), pp.109174. ⟨10.1016/j.celrep.2021.109174⟩
Article dans une revue hal-03345357 v1
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The wild grape genome sequence provides insights into the transition from dioecy to hermaphroditism during grape domestication

Hélène E Badouin , Amandine Velt , François Gindraud , Timothée Flutre , Vincent Dumas et al.
Genome Biology, 2020, 21 (1), pp.223. ⟨10.1186/s13059-020-02131-y⟩
Article dans une revue hal-02946414 v1
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Clustering of strong replicators associated with active promoters is sufficient to establish an early-replicating domain

Caroline Brossas , Anne-Laure Valton , Sergey V Venev , Sabarinadh Chilaka , Antonin Counillon et al.
EMBO Journal, 2020, ⟨10.15252/embj.201899520⟩
Article dans une revue hal-03023038 v1
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Evolution of replication origins in vertebrate genomes: rapid turnover despite selective constraints

Florian Massip , Marc Laurent , Caroline Brossas , José miguel Fernández-Justel , Maria Gomez et al.
Nucleic Acids Research, 2019, 47 (10), pp.5114-5125. ⟨10.1093/nar/gkz182⟩
Article dans une revue hal-02349718 v1
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Probabilistic Count Matrix Factorization for Single Cell Expression Data Analysis

Ghislain Durif , Laurent Modolo , Jeff E Mold , Sophie Lambert-Lacroix , Franck Picard
Bioinformatics, 2019, 35, 20, pp.4011-4019. ⟨10.1093/bioinformatics/btz177⟩
Article dans une revue hal-01649275 v3
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Minimax wavelet estimation for multisample heteroscedastic nonparametric regression

Madison Giacofci , Sophie Lambert-Lacroix , Franck Picard
Journal of Nonparametric Statistics, 2018, 30 (1), pp.238-261. ⟨10.1080/10485252.2017.1406091⟩
Article dans une revue hal-02270811 v1
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High Dimensional Classification with combined Adaptive Sparse PLS and Logistic Regression

Ghislain Durif , Laurent Modolo , Jakob Michaelsson , Jeff E. Mold , Sophie Lambert-Lacroix et al.
Bioinformatics, 2018, 34 (3), pp.485-493. ⟨10.1093/bioinformatics/btx571⟩
Article dans une revue hal-01587360 v1
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Continuous testing for Poisson process intensities: a new perspective on scanning statistics

Franck Picard , Patricia Reynaud-Bouret , Etienne Roquain
Biometrika, 2018, ⟨10.1093/biomet/asy044⟩
Article dans une revue hal-02350783 v1

Genomic imprinting mediates dosage compensation in a young plant XY system

Aline Muyle , Niklaus Zemp , Cécile Fruchard , Radim Cegan , Jan Vrána et al.
Nature Plants, 2018, 4 (9), pp.677-680. ⟨10.1038/s41477-018-0221-y⟩
Article dans une revue hal-02347985 v1
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SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence

Hélène Lopez-Maestre , Lilia Brinza , Camille Marchet , Janice Kielbassa , Sylvère Bastien et al.
Nucleic Acids Research, 2016, ⟨10.1093/nar/gkw655⟩
Article dans une revue hal-01352586 v1
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Adaptive Lasso and group-Lasso for functional Poisson regression

Stéphane Ivanoff , Franck Picard , Vincent Rivoirard
Journal of Machine Learning Research, 2016, 17 (55), pp.1--46
Article dans une revue hal-01097914 v2

Modeling overdispersion heterogeneity in differential expression analysis using mixtures

E. Bonafede , Franck Picard , S. Robin , C. Viroli
Biometrics, 2016, 72 (3), pp.804-814. ⟨10.1111/biom.12458⟩
Article dans une revue istex hal-02016384 v1
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On the robustness of the generalized fused lasso to prior specifications

Vivian Viallon , Sophie Lambert-Lacroix , Holger Höfling , Franck Picard
Statistics and Computing, 2016, 26 (1), pp.285-301. ⟨10.1007/s11222-014-9497-6⟩
Article dans une revue hal-01067903 v2
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SEX-DETector: a probabilistic approach to study sex chromosomes in non-model organisms

A. Muyle , Jos Käfer , N. Zemp , S. Mousset , Franck Picard et al.
Genome Biology and Evolution, 2016, 8, pp.2530-2543. ⟨10.1093/gbe/evw172⟩
Article dans une revue hal-02053627 v1
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A new genome-wide method to track horizontally transferred sequences: application to Drosophila

L. Modolo , Franck Picard , E. Lerat
Genome Biology and Evolution, 2014, 6 (2), pp.416-32. ⟨10.1093/gbe/evu026⟩
Article dans une revue hal-02045117 v1
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The spatiotemporal program of DNA replication is associated with specific combinations of chromatin marks in human cells.

Franck Picard , Jean-Charles Cadoret , Benjamin Audit , Alain Arneodo , Adriana A. Alberti et al.
PLoS Genetics, 2014, 10 (5), pp.e1004282. ⟨10.1371/journal.pgen.1004282⟩
Article dans une revue hal-00995097 v1

Fast and Parallel Algorithm for Population-Based Segmentation of Copy-Number Profiles

Guillem Rigaill , Vincent Miele , Franck Picard
Lecture Notes in Computer Science, 2014, 8452, pp.248-258
Article dans une revue hal-02045097 v1
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Spatially constrained clustering of ecological networks

Vincent Miele , Franck Picard , S. Dray
Methods in Ecology and Evolution, 2014, 5 (8), pp.771-779. ⟨10.1111/2041-210X.12208⟩
Article dans une revue hal-02045124 v1

HOMER : a homogenization software - methods and applications

Olivier Mestre , Peter Domonkos , Franck Picard , Ingeborg Auer , Stephane Robin et al.
IDOJARAS, 2013, 117 (1), pp.47 - 67
Article dans une revue hal-01190665 v1

Wavelet-based clustering for mixed-effects functional models in high dimension

Madison Giacofci , Sophie Lambert-Lacroix , Guillemette Marot , Franck Picard
Biometrics, 2013, 69 (1), pp.31-40. ⟨10.1111/j.1541-0420.2012.01828.x⟩
Article dans une revue istex hal-00782458 v1

High-quality sequence clustering guided by network topology and multiple alignment likelihood.

Vincent Miele , Simon Penel , Vincent Daubin , Franck Picard , Daniel Kahn et al.
Bioinformatics, 2012, 28 (8), pp.1078-85. ⟨10.1093/bioinformatics/bts098⟩
Article dans une revue hal-00965711 v1

Joint segmentation of multivariate Gaussian processes using mixed linear models

Franck F. Picard , E. Lebarbier , E. E. Budinska , Stephane S. Robin
Computational Statistics and Data Analysis, 2011, 55 (2), pp.1160 - 1170. ⟨10.1016/j.csda.2010.09.015⟩
Article dans une revue hal-01001452 v1

Bioinformatics developments for NGS data analysis at PRABI

F. Picard , Guy Perrière
EMBNet.journal, 2011, 17, pp.12
Article dans une revue hal-02297662 v1

Statistiques et Génome

Franck Picard , S. Schbath , E. Lebarbier , Pierre Neuvial , J. Chiquet
Gazette des Mathématiciens, 2011, 130, pp.1-32
Article dans une revue hal-00698143 v1
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The auxin signalling network translates dynamic input into robust patterning at the shoot apex

Teva Vernoux , Géraldine Brunoud , Etienne Farcot , Valérie Morin , Hilde van Den Daele et al.
Molecular Systems Biology, 2011, 7 (508), ⟨10.1038/msb.2011.39⟩
Article dans une revue hal-00828880 v1
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Joint segmentation, calling, and normalization of multiple CGH profiles

Franck Picard , Mark Hoebeke , Guillem Rigaill , Baba Thiam , Stephane Robin
Biostatistics, 2011, 12 (3), pp.413-428. ⟨10.1093/biostatistics/kxq076⟩
Article dans une revue hal-01019859 v1

Strategies for online inference of model-based clustering in large and growing networks

H. Zanghi , Franck Picard , V. Miele , C. Ambroise
Annals of Applied Statistics, 2010, 4 (2), pp.687-714. ⟨10.1214/10-AOAS359⟩
Article dans une revue hal-00539318 v1

Preprocessing and downstream analysis of microarray DNA copy number profiles

M.A. van de Wiel , Franck Picard , W.N. van Wieringen , B. Ylstra
Briefings in Bioinformatics, 2010, 12 (1), pp.10-21. ⟨10.1093/bib/bbq004⟩
Article dans une revue hal-00539440 v1
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Deciphering the connectivity structure of biological networks using MixNet

Franck Picard , Vincent Miele , Jean-Jacques J.-J. Daudin , Ludovic Cottret , Stephane S. Robin
BMC Bioinformatics, 2009, 10, pp.1-11. ⟨10.1186/1471-2105-10-S6-S17⟩
Article dans une revue hal-02658961 v1

Deciphering the connectivity structure of biological networks using MixNet

Franck Picard , V. Miele , L. Cottret , J.J. Daudin , S. Robin
BMC Bioinformatics, 2009, in press, pp.1-1
Article dans une revue hal-00391483 v1

Deciphering the connectivity structure of biological networks using MixNet

Franck Picard , V. Miele , J.J. Daudin , L. Cottret , S. Robin
BMC Bioinformatics, 2009, 10, pp.1-11
Article dans une revue hal-00428390 v1

Assessing the exceptionality of network motifs

Franck Picard , Jean-Jacques Daudin , Michel Koskas , Sophie Schbath , Stephane Robin
Journal of Computational Biology, 2008, 15 (1), pp.1-20. ⟨10.1089/cmb.2007.0137⟩
Article dans une revue hal-01197499 v1

A mixture model for random graphs

J.-J. Daudin , Franck Picard , S. Robin
Statistics and Computing, 2008, 18, pp.173-183
Article dans une revue hal-00428180 v1

Assessing the exceptionality of network motifs

Franck Picard , J.-J. Daudin , M. Koskas , S. Schbath , S. Robin
Journal of Computational Biology, 2008, 15, pp.1-20
Article dans une revue hal-00428157 v1

A mixture model for random graphs

Jean-Jacques Daudin , Franck Picard , Stephane Robin
Statistics and Computing, 2008, 18 (2), pp.173-183. ⟨10.1007/s11222-007-9046-7⟩
Article dans une revue hal-01197587 v1

A segmentation/clustering model for the analysis of array CGH data

Franck Picard , S. Robin , E. Lebarbier , J.-J. Daudin
Biometrics, 2007, 63, pp.758-766
Article dans une revue hal-00434826 v1

Computing power in case-control association studies through the use of quadratic approximations: application to meat-statistics

M. Guedj , E. Della-Chiesa , Franck Picard , Gregory Nuel
Annals of Human Genetics, 2007, --, pp.57-62
Article dans une revue hal-00434865 v1
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A segmentation/clustering model for the analysis of array CGH data

Franck Picard , Stephane Robin , Jean-Jacques Daudin
Biometrics, 2007, 63 (3), pp.758-766. ⟨10.1111/j.1541-0420.2006.00729.x⟩
Article dans une revue istex hal-01197574 v1

Melanocortin-4 receptor mutations in a large cohort of severely obese adults: prevalence functional classification genotype-phenotype relationship and lack of association with binge eating

C. Lubrano-Berthelier , B. Dubern , J.-M. Lacorte , Franck Picard , A. Shapiro et al.
Journal of Clinical Endocrinology and Metabolism, 2006, 91, pp.1811-1818
Article dans une revue hal-00427994 v1

Uncovering structure in biological networks

J.J. Daudin , Vincent Lacroix , M. Mariadassou , V. Miele , Franck Picard et al.
incollection, 2006, --, pp.471-483
Article dans une revue hal-00427936 v1
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A statistical approach for array CGH data analysis

Franck Picard , Stephane Robin , Marc Lavielle , Christian Vaisse , Jean-Jacques Daudin
BMC Bioinformatics, 2005, 6, ⟨10.1186/1471-2105-6-27⟩
Article dans une revue hal-01222433 v1

Obesity-associated mutations in the melanocortin-4 receptor provide novel insights into its function

C. Govaerts , S. Srinivasan , A. Shapiro , S. Zhang , Franck Picard et al.
Peptides, 2005, 26, pp.1909-1919
Article dans une revue hal-00427759 v1

A statistical approach for array CGH data analysis

Franck Picard , S. Robin , M. Lavielle , C. Vaisse , J.-J. Daudin
BMC Bioinformatics, 2005, 6, pp.1-14
Article dans une revue hal-00427846 v1

Constitutive activity of the melanocortin-4 receptor is maintained by its N-terminal domain and plays a role in energy homeostasis in humans

S. Srinivasan , C. Lubrano-Berthelier , C. Govaerts , Franck Picard , P. Santiago et al.
Journal of Clinical Investigation, 2004, 114, pp.1158-1164
Article dans une revue hal-00427559 v1

Molecular genetics of human obesity-associated MC4R mutations

C. Lubrano-Berthelier , M. Cavazos , B. Dubern , A. Shapiro , C. Le Stunff et al.
Annals of the New York Academy of Sciences, 2003, 994, pp.49-57
Article dans une revue hal-00427443 v1
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A Probabilistic Graph Coupling View of Dimension Reduction

Hugues van Assel , Thibault Espinasse , Julien Chiquet , Franck Picard
Advances in Neural Information Processing Systems, Nov 2022, Nouvelle-Orleans, United States. pp.10696-10708
Communication dans un congrès hal-03548776 v3
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Probabilistic Count Matrix Factorization for Single Cell Expression Data Analysis

Ghislain Durif , Laurent Modolo , Jeff E. Mold , Sophie Lambert-Lacroix , Franck Picard
RECOMB 2018 - 22nd Annual International Conference on Research in Computational Molecular Biology, Ecole Polytechnique, Apr 2018, Paris, France. pp.254-255
Communication dans un congrès hal-01962030 v1

Fast and parallel algorithm for population-based segmentation of copy-number profiles

Guillem Rigaill , Vincent Miele , Franck Picard
10. International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics (CIBB), Jun 2013, Nice, France. 275 p., ⟨10.1007/978-3-319-09042-9_18⟩
Communication dans un congrès hal-02742012 v1

Wavelet-based clustering for mixed-effects functional models

Madison Giacofci , Sophie Lambert-Lacroix , Franck Picard
43eme Journées de Statistiques, May 2011, Gammarth, Tunisie
Communication dans un congrès hal-00987676 v1
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Modèle linéaire mixte avec segmentation : application à la détection de changements dans les dates de vendanges

Franck Picard , Eva Budinska , Stephane Robin
42. Journées de Statistique, May 2010, Marseille, France
Communication dans un congrès hal-01197573 v1
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Modeling the structure and dynamics of the auxin signaling network in the shoot apical meristem

Etienne Farcot , Yann Guédon , Géraldine Brunoud , Jonathan Legrand , Hilde van Den Daele et al.
6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, Canada. pp.146-148
Communication dans un congrès hal-00831786 v1
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Modèle linéaire mixte avec segmentation : application à la détection de changements dans les dates de vendanges

Emilie Lebarbier , Franck Picard , Eva Budinska , Stéphane Robin
42èmes Journées de Statistique, 2010, Marseille, France, France
Communication dans un congrès inria-00494861 v1
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Statistical assessment of chromosomal aberrations at the cohort level: the CGHSeg package

Franck Picard , Baba Thiam , Stephane Robin
The 5. R useR Conference, Jul 2009, Rennes, France. 18 p
Communication dans un congrès hal-01197546 v1
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Joint segmentation of multivariate Gaussian processes using mixed linear models

Franck Picard , Eva Budinska , Stephane S. Robin
12. International Conference on Applied Stochastic Models and Data Analysis, Jun 2007, Chania, Greece
Communication dans un congrès hal-02751255 v1

Assessing the exceptionality of network motifs

Franck Picard , Jean-Jacques Daudin , Michel Koskas , Sophie Schbath , Stephane Robin
JOBIM Journées Ouvertes Biologie Informatique Mathématiques, Jul 2007, Marseille, France
Communication dans un congrès hal-01197515 v1