François Pompanon

Publications

Article dans une revue (19)

Inferring Domestic Goat Demographic History Through Ancient Genome Imputation Jolijn Erven,Alice Etourneau,Marjan Mashkour,Mahesh Neupane,Phillipe Bardouet al. Genome Biology and Evolution, 2025, 17 (11), ⟨10.1093/gbe/evaf181⟩ Article dans une revue hal-05393593v1
Mike Bruford (1963–2023) Pablo Orozco-Terwengel,Eric Coissac,Olivier Hanotte,Francois Pompanon,Paul Sunnuckset al. Molecular Ecology, 2023, 32 (19), pp.5448-5449. ⟨10.1111/mec.17133⟩ Article dans une revue hal-04867262v1
VarGoats project: a dataset of 1159 whole-genome sequences to dissect Capra hircus global diversity Laure Denoyelle,Estelle Talouarn,Philippe Bardou,Licia Colli,Adriana Albertiet al. Genetics Selection Evolution, 2021, 53 (1), 14 p. ⟨10.1186/s12711-021-00659-6⟩ Article dans une revue hal-03480970v1
Search for Selection Signatures Related to Trypanosomosis Tolerance in African Goats Bruno Serranito,Dominique Taurisson-Mouret,Sahraoui Harkat,Abbas Laoun,Nadjet-Amina Ouchene-Khelifiet al. Frontiers in Genetics, 2021, 12, ⟨10.3389/fgene.2021.715732⟩ Article dans une revue hal-04804805v1
Local adaptations of Mediterranean sheep and goats through an integrative approach Bruno Serranito,Marco Cavalazzi,Pablo Vidal,Dominique Taurisson-Mouret,Elena Cianiet al. Scientific Reports, 2021, 11, pp.21363. ⟨10.1038/s41598-021-00682-z⟩ Article dans une revue hal-03421679v1
Local adaptations of Mediterranean sheep and goats through an integrative approach Éric Rouvellac,Serranito Bruno,Marco Cavalazzi,Pablo Vidal,Dominique Taurisson-Mouretet al. Scientific Reports, 2021, 11 (21363 (2021)), https://doi.org/10.1038/s41598-021-00682-z Article dans une revue hal-04973085v1
Genomic Uniqueness of Local Sheep Breeds From Morocco Abdessamad Ouhrouch,Simon Boitard,Frédéric Boyer,Bertrand Servin,Anne da Silvaet al. Frontiers in Genetics, 2021, 12, pp.723599. ⟨10.3389/fgene.2021.723599⟩ Article dans une revue hal-03591256v1
Altitudinal Zonation of Green Algae Biodiversity in the French Alps Adeline Stewart,Delphine Rioux,Fréderic Boyer,Ludovic Gielly,François Pompanonet al. Frontiers in Plant Science, 2021, 12, pp.679428. ⟨10.3389/fpls.2021.679428⟩ Article dans une revue hal-03258608v1
EvoSheep : The Makeup of Sheep Breeds in the Ancient Near East Emmanuelle Vila,Philippe Abrahami,Moussab Albesso,Agraw Amane,Camille Baderet al. Antiquity, 2021, 95 (379), pp.e2, 1-8. ⟨10.15184/aqy.2020.247⟩ Article dans une revue hal-03402639v1
An evaluation of sequencing coverage and genotyping strategies to assess neutral and adaptive diversity Badr Benjelloun,Frédéric Boyer,Ian Streeter,Wahid Zamani,Stefan Engelenet al. Molecular Ecology Resources, 2019, 19 (6), pp.1497-1515. ⟨10.1111/1755-0998.13070⟩ Article dans une revue cea-04307622v1
Old origin of a protective endogenous retrovirus (enJSRV) in the Ovis genus Tristan Cumer,François Pompanon,Frédéric Boyer Heredity, 2019, 122 (2), ⟨10.1038/s41437-018-0112-z⟩ Article dans une revue hal-04809547v1
Genetic homogenization of indigenous sheep breeds in Northwest Africa Ibrahim Belabdi,Abdessamad Ouhrouch,Mohamed Lafri,Semir Bechir Suheil Gaouar,Elena Cianiet al. Scientific Reports, 2019, 9 (1), pp.7920. ⟨10.1038/s41598-019-44137-y⟩ Article dans une revue hal-02627209v1
Ancient goat genomes reveal mosaic domestication in the Fertile Crescent Kevin P Daly,Pierpaolo Maisano Delser,Victoria Mullin,Amelie Scheu,Valeria Mattiangeliet al. Science, 2018, 361 (6397), pp.85-88. ⟨10.1126/science.aas9411⟩ Article dans une revue hal-02188464v1
Convergent genomic signatures of domestication in sheep and goats Florian Alberto,Frédéric Boyer,Pablo Orozco-Terwengel,Ian Streeter,Bertrand Servinet al. Nature Communications, 2018, 9 (1), pp.813. ⟨10.1038/s41467-018-03206-y⟩ Article dans une revue cea-01875703v1
Characterizing neutral genomic diversity and selection signatures in indigenous populations of Moroccan goats (Capra hircus) using WGS data Badr Benjelloun,Florian F. Alberto,Ian Streeter,Frédéric Boyer,Eric Coissacet al. Frontiers in Genetics, 2015, 6, ⟨10.3389/fgene.2015.00107⟩ Article dans une revue hal-01964918v1
Prey Preference of Snow Leopard (Panthera uncia) in South Gobi, Mongolia Wasim Shehzad,Thomas Michael Mccarthy,François Pompanon,Lkhagvajav Purevjav,Eric Coissacet al. PLoS ONE, 2012, 7 (2), pp.e32104. ⟨10.1371/journal.pone.0032104⟩ Article dans une revue hal-04804823v1
ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis. Tiayyba Riaz,Wasim Shehzad,Alain Viari,François Pompanon,Pierre Taberletet al. Nucleic Acids Research, 2011, 39 (21), pp.e145. ⟨10.1093/nar/gkr732⟩ Article dans une revue hal-00746852v1
Persistence of Environmental DNA in Freshwater Ecosystems Tony Dejean,Alice Valentini,Antoine Duparc,Stéphanie Pellier-Cuit,François Pompanonet al. PLoS ONE, 2011, 6 (8), pp.e23398. ⟨10.1371/journal.pone.0023398⟩ Article dans une revue hal-04804837v1
An In silico approach for the evaluation of DNA barcodes Gentile Ficetola,Eric Coissac,Stéphanie Zundel,Tiayyba Riaz,Wasim Shehzadet al. BMC Genomics, 2010, 11 (1), pp.434. ⟨10.1186/1471-2164-11-434⟩ Article dans une revue hal-04809600v1

Chapitre d'ouvrage (2)

Imprints of domestication in the sheep genome Charlotte Her,François Pompanon Georges PELLETIER. Genetics of Domestications, ISTE Editions, pp.21-40, 2024, 9781789491678 Chapitre d'ouvrage hal-04808209v1
Multiplicité des symbioses : du parasitisme au mutualisme Wafa Achouak,Philippe Bertin,Pierre Capy,Didier Debroas,Franck Dedeineet al. L’empreinte du Vivant, Le Cherche Midi, pp.191, 2015, 978-2-7491-4383-5 Chapitre d'ouvrage hal-02389481v1

Pré-publication, Document de travail (3)

Multiple adaptive solutions to face climatic constraints: novel insights in the debate over the role of convergence in local adaptation Badr Benjelloun,Kevin Leempoel,Frédéric Boyer,Sylvie Stucki,Ian Streeteret al. 2023 Pré-publication, Document de travail hal-04186277v1
BAdabouM: a genomic structural variations discovery tool for polymorphism analyses Tristan Cumer,François Pompanon,Frédéric Boyer 2024 Pré-publication, Document de travail hal-04804791v1
Phylogeny and distribution of Y-chromosomal haplotypes in domestic, ancient and wild goats Isaäc Nijman,Benjamin Rosen,Zhuqing Zheng,Yu Jiang,Tristan Cumeret al. 2021 Pré-publication, Document de travail hal-03152209v1

Communication dans un congrès (5)

Y-chromosomal haplotypes in domestic and wild goats reveal ancient paternal bottlenecks and recent introgressions J.A. Lenstra,Vargoats Consortium,I.J. Nijman,B.D. Rosen,Philippe Bardouet al. ISGC and IGGC Virtual Meeting, Jun 2021, Toulouse-Dunedin, France. pp.886-889, ⟨10.3920/978-90-8686-940-4_208⟩ Communication dans un congrès hal-03817722v1
Towards a sustainable management of farm animal genetic diversity in the era of whole-genome data: The case of sheep and goats François Pompanon,Badr Benjelloun 37th International Society for Animal Genetics Conference, International Society for Animal Genetics, Jul 2019, Lleida, Spain Communication dans un congrès hal-04985662v1
Epigenetic factors to face environmental variations in small ruminants Laure Denoyelle,Pierre de Villemereuil,Frédéric Boyer,Meidhi Khelifi,Clément Gafféet al. 37th International Society for Animal Genetics Conference, International Society for Animal Genetics, Jul 2019, Lleida, Spain Communication dans un congrès hal-04985675v1
Caractérisation du régime alimentaire des ruminants à partir de l'analyse des produits de la digestion par DNA metabarcoding Vincent Niderkorn,René Baumont,Anne Farruggia,Remy Delagarde,Jean-Louis Peyraudet al. 5. Journées d'Animation Scientifique du département Phase (JAS Phase 2013), Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Oct 2013, Paris, France. 17 diapositives Communication dans un congrès hal-01210453v1
The individual-level approach: an original genetic field sampling scheme to optimize barrier detection in patchy populations Jérôme Prunier,Serge Fenet,François Pompanon,Pierre Joly,Bernard Kaufmannet al. IENE 2012, international conference on ecology and transportation, Oct 2012, Postdam-Berlin, Germany Communication dans un congrès hal-01353154v1

Poster de conférence (2)

Présentation et premiers résultats du programme 1000 génomes caprins : VarGoats Philippe Bardou,Céline Bourdon,Laure Denoyelle,Thomas Faraut,Estelle Talouarnet al. Journées Scientifiques du Département de Génétique Animale, Oct 2018, Dienné, France Poster de conférence hal-03817570v1
Chronology of selective events during sheep domestication Charlotte Her,François Pompanon International Conference on Ecological Sciences, Oct 2018, Rennes, France Poster de conférence hal-04985705v1