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Frédéric Fabre

23
Documents
Identifiants chercheurs
  • IdHAL frederic-fabre
  • ORCID 0000-0001-8271-7678
  • Google Scholar : https://scholar.google.com/citations?user=eqCh7YEAAAAJ&hl=fr&authuser=1
  • IdRef : 083686339

Présentation

My work focuses on the epidemiology and evolutionary biology of plant pathogens, with a particular interest in insect-borne diseases (virus, but also phytoplasm) and fungi. My research is mainly based on mathematical models, numerical simulations and statistical inference methods. Applied perspectives are to derive management strategies of plant disease resistance and of quarantine/emerging diseases. #### Education and Academic Position - **2001-2004** : PhD Thesis in Applied Ecology and Agronomy at INRA, UMR BiO3P, Rennes, France. - **1996-1999** : Master in Plant Protection at Agro-Campus Ouest, Rennes, France. #### Academic Position - **since 2014** : Researcher at INRAE in plant pathogens epidemiology and evolution, [UMR SAVE](https://www6.bordeaux-aquitaine.inrae.fr/sante-agroecologie-vignoble/), Bordeaux, France. - **2005-2013** : Researcher at INRAE in plant virus epidemiology and evolution, [UR Plant Pathology](https://www6.paca.inrae.fr/pathologie_vegetale_eng/), Avignon, France. - **1999-2001** : Engineer at CIRAD, UMR PV BMT, Saint Pierre de la Réunion, France. #### PhD candidates and post-doc fellows (current and past) - **2021-2022**: Marta Zaffaroni (Post-doc, in collaboration with Loup Rimbaud and Julien Papaïx). - **2020-2021**: Hola-Kwame Adrakey (Post-doc, in collaboration with Sylvie Malembic and Adrien Rusch). - **2019-2021** : Manon Painon (PhD, supervised with François Delmotte). - **2016-2018** : Ramsés Djidjou-Demasse (Post-doc, in collaboration with Arnaud Ducrot and Jean-Baptiste Burie). - **2013-2016** : Elsa Rousseau (PhD, supervised with Benoit Moury, Ludovic Mailleret and Frédéric Grognard).

Publications

"benoit-moury"
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Models of plant resistance deployment

Loup Rimbaud , Frédéric Fabre , Julien Papaïx , Benoît Moury , Christian Lannou
Annual Review of Phytopathology, 2021, 59, pp.125-152. ⟨10.1146/annurev-phyto-020620-122134⟩
Article dans une revue hal-03220213v1
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The quasi-universality of nestedness in the structure of quantitative plant-parasite interactions

Benoît Moury , Jean-Marc Audergon , Sylvie Baudracco-Arnas , Safa Ben Krima , François Bertrand
Peer Community Journal, 2021, 1, pp.e44. ⟨10.24072/pcjournal.51⟩
Article dans une revue hal-03461843v1
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Virus epidemics, plant-controlled population bottlenecks and the durability of plant resistance

Elsa Rousseau , Mélanie Bonneault , Frédéric Fabre , Benoît Moury , Ludovic Mailleret
Philosophical Transactions of the Royal Society B: Biological Sciences, 2019, 374 (1775), pp.20180263. ⟨10.1098/rstb.2018.0263⟩
Article dans une revue hal-02149025v1
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Impact of genetic drift, selection and accumulation level on virus adaptation to its host plants

Elsa Rousseau , Lucie Tamisier , Frédéric Fabre , Vincent Simon , Marion Szadkowski
Molecular Plant Pathology, 2018, 19 (12), pp.2575-2589. ⟨10.1111/mpp.12730⟩
Article dans une revue hal-01953902v1
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Molecular and biological characterization of two potyviruses infecting lettuce in southeastern France

Cecile Desbiez , Alexandra Schoeny , Brigitte Maisonneuve , Karine Berthier , Isabelle Bornard
Plant Pathology, 2017, 66 (6), pp.970-979. ⟨10.1111/ppa.12651⟩
Article dans une revue hal-01533923v1
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Vectors as motors (of virus evolution)

Frédéric Fabre , Benoît Moury
Peer Community In Evolutionary Biology, 2017, pp.100021. ⟨10.24072/pci.evolbiol.100021⟩
Article dans une revue hal-01507124v1

Mosaics often outperform pyramids: insights from a model comparing strategies for the deployment of plant resistance genes against viruses in agricultural landscapes

Ramsès Emeric Djidjou Demasse , Benoît Moury , Frédéric Fabre
New Phytologist, 2017, 216 (1), pp.239-253. ⟨10.1111/nph.14701⟩
Article dans une revue hal-01604528v1

Quantitative trait loci in pepper control the effective population size of two RNA viruses at inoculation

Lucie Tamisier , Elsa Rousseau , Sebastien Barraillé , Ghislaine Nemouchi , Marion Szadkowski
Journal of General Virology, 2017, 98 (7), pp.1923 - 1931. ⟨10.1099/jgv.0.000835⟩
Article dans une revue hal-01571391v1
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Determinants of host species range in plant viruses

Benoît Moury , Frédéric Fabre , Eugénie Hébrard , Rémy Froissart
Journal of General Virology, 2017, 98 (4), pp.862-873. ⟨10.1099/jgv.0.000742⟩
Article dans une revue hal-01522298v1
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Estimating virus effective population size and selection without neutral markers

Elsa Rousseau , Benoît Moury , Ludovic Mailleret , Rachid Senoussi , Alain Palloix
PLoS Pathogens, 2017, 13 (11), pp.e1006702. ⟨10.1371/journal.ppat.1006702⟩
Article dans une revue hal-01658535v2
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Epidemiological and evolutionary management of plant resistance: optimizing the deployment of cultivar mixtures in time and space in agricultural landscapes

Frédéric Fabre , Elsa Rousseau , Ludovic Mailleret , Benoît Moury
Evolutionary Applications, 2015, 8 (10), pp.919-932. ⟨10.1111/eva.12304⟩
Article dans une revue hal-01239676v1
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Narrow bottlenecks affect pea seedborne mosaic virus populations during vertical seed transmission but not during leaf colonization.

Frédéric Fabre , Benoît Moury , Elisabeth Ida Johansen , Vincent Simon , Mireille Jacquemond
PLoS Pathogens, 2014, 10 (1), pp.e1003833. ⟨10.1371/journal.ppat.1003833⟩
Article dans une revue hal-02637733v1
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Interaction pattern between Potato virus Y and eIF4E-mediated recessive resistance in the Solanaceae

Benoît Moury , Bérenger Janzac , Youna Ruellan , Vincent Simon , Mekki Ben Khalifa
Journal of Virology, 2014, 88 (17), pp.9799-9807. ⟨10.1128/JVI.00930-14⟩
Article dans une revue hal-02631938v1
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Modelling the evolutionary dynamics of viruses within their hosts: a case study using high-throughput sequencing

Frédéric Fabre , Josselin Montarry , Jérôme Coville , Rachid Senoussi , Vincent Simon
PLoS Pathogens, 2012, 8 (4), pp.e1002654. ⟨10.1371/journal.ppat.1002654⟩
Article dans une revue hal-01208592v1
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Durable strategies to deploy plant resistance in agricultural landscapes

Frédéric Fabre , Elsa Rousseau , Ludovic Mailleret , Benoît Moury
New Phytologist, 2012, 193 (4), pp.1064-1075. ⟨10.1111/j.1469-8137.2011.04019.x⟩
Article dans une revue hal-00848412v1

L’adaptation des virus de plantes aux résistances variétales

Benoît Moury , Frederic Fabre , Josselin Montarry , Bérenger Janzac , Valérie Ayme
Virologie, 2010, 14 (4), pp.227-239. ⟨10.1684/vir.2010.0311⟩
Article dans une revue hal-02669234v1
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Key determinants of resistance durability to plant viruses: insights from a model linking within- and between-host dynamics

Frederic Fabre , Claude Bruchou , Alain Palloix , Benoît Moury
Virus Research, 2009, 141 (2), pp.140-149. ⟨10.1016/j.virusres.2008.11.021⟩
Article dans une revue hal-02666453v1
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Constraints on evolution of virus avirulence factors predict the durability of corresponding plant resistances

Bérenger Janzac , Frederic Fabre , Alain Palloix , Benoît Moury
Molecular Plant Pathology, 2009, 10 (5), pp.599-610. ⟨10.1111/j.1364-3703.2009.00554.x⟩
Article dans une revue hal-02666562v1
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Estimation of the number of virus particles transmitted by an insect vector

Benoît Moury , Frederic Fabre , Rachid R. Senoussi
Proceedings of the National Academy of Sciences of the United States of America, 2007, 104 (45), pp.17891-17896. ⟨10.1073/pnas.0702739104⟩
Article dans une revue hal-02664983v1

Peut-on prédire la durabilité des résistances ? Le cas des virus

Benoît Moury , Lucie Tamisier , Frédéric Fabre , Loup Rimbaud
L'immunité des plantes. Pour des cultures résistantes aux maladies, Editions Quae, 2021, 9782759232338
Chapitre d'ouvrage hal-03131044v1

Écologie des interactions plante-bioagresseur

Julien Papaïx , Karine Berthier , Frédéric Fabre , Benoît Moury , Virginie Ravigné
L'immunité des plantes. Pour des cultures résistantes aux maladies, Editions Quae, 2021, 9782759232338
Chapitre d'ouvrage hal-03131072v1

L'émergence de maladies virales chez les plantes: des situations variées et des causes multiples

Hervé Lecoq , Cecile Desbiez , Frederic Fabre , Mireille Jacquemond , Benoît Moury
Les maladies émergentes. Épidémiologie chez le végétal, l'animal et l'homme, Editions Quae, 2010, 978-2-7592-0510-3
Chapitre d'ouvrage hal-02823657v1