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Journal articles26 documents

  • Fabien Degalez, Frédéric Jehl, Kévin Muret, Maria Bernard, Frédéric Lecerf, et al.. Watch out for a second SNP: focus on multi-nucleotide variants in coding regions and rescued stop-gained. Frontiers in Genetics, 2021, 12, pp.659287. ⟨10.3389/fgene.2021.659287⟩. ⟨hal-03280040⟩
  • Frédéric Jehl, Fabien Degalez, Frédéric Lecerf, Maria Bernard, Laetitia Lagoutte, et al.. RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and Cis-Regulation Analysis by Allele-Specific Expression in Livestock Species. Frontiers in Genetics, 2021, 12, pp.655707. ⟨10.3389/fgene.2021.655707⟩. ⟨hal-03276149⟩
  • Michèle Tixier-Boichard, Frédéric Lecerf, Frédéric Herault, Philippe Bardou, Christophe C. Klopp. Le projet « Mille Génomes Gallus » : partager les données de séquences pour mieux les utiliser. INRAE Productions Animales, 2020, 33 (3), pp.189-202. ⟨10.20870/productions-animales.2020.33.3.4564⟩. ⟨hal-03103324⟩
  • Kévin Muret, Christophe C. Klopp, Valentin Wucher, Diane Esquerré, Fabrice Legeai, et al.. Long noncoding RNA repertoire in chicken liver and adipose tissue. Genetics Selection Evolution, 2017, 49 (1), pp.6. ⟨10.1186/s12711-016-0275-0⟩. ⟨hal-01431420⟩
  • Pierre-François Roux, Simon Boitard, Anne Blum, Brian Parks, Alexandra Montagner, et al.. Combined QTL and selective sweep mappings with coding SNP annotation and cis-eQTL analysis revealed PARK2 and JAG2 as new candidate genes for adiposity regulation.. G3, 2015, 5, pp.517-529. ⟨10.1534/g3.115.016865⟩. ⟨hal-01194040⟩
  • Thomas Obadia, Olivier Sallou, Marion Ouedraogo, Grégory Guernec, Frédéric Lecerf. The GAG database: A new resource to gather genomic annotation cross-references. Gene, 2013, 527 (2), pp.503-509. ⟨10.1016/j.gene.2013.06.063⟩. ⟨hal-01207750⟩
  • Sandrine Lagarrigue, Farhad Hormozdiari, Lisa Martin, Frédéric Lecerf, Yehudit Hasin, et al.. Limited RNA editing in exons of mouse liver and adipose. Genetics, 2013, 193 (4), pp.1107-1115. ⟨10.1534/genetics.112.149054⟩. ⟨hal-01207749⟩
  • Marion Ouedraogo, Charles Bettembourg, Anthony Bretaudeau, Olivier Sallou, Christian Diot, et al.. The duplicated genes database: identification and functional annotation of co-localised duplicated genes across genomes. PLoS ONE, 2012, 7 (11), pp.e50653. ⟨10.1371/journal.pone.0050653⟩. ⟨hal-00841104⟩
  • Frédéric Lecerc, Anthony Bretaudeau, Olivier Sallou, Colette Désert, Yuna Blum, et al.. AnnotQTL: a new tool to gather functional and comparative information on a genomic region. Nucleic Acids Research, 2011, 39 (Suppl 2), open access. ⟨10.1093/nar/gkr361⟩. ⟨hal-00597398⟩
  • O. Demeure, Frédéric Lecerf, C. Duby, Colette Désert, S. Ducheix, et al.. Regulation of LPCAT3 by LXR.. Gene, 2011, 470 (1-2), pp.7-11. ⟨10.1016/j.gene.2010.09.002⟩. ⟨hal-00729271⟩
  • L. Drouilhet, F. Lecerf, L. Bodin, Stéphane Fabre, P. Mulsant. Fine mapping of the FecL locus influencing prolificacy in Lacaune sheep. Animal Genetics, 2009, 40 (6), pp.804-812. ⟨10.1111/j.1365-2052.2009.01919.x⟩. ⟨hal-03137538⟩
  • Fanny Calenge, Frédéric Lecerf, Julie Demars, K. Feve, F. Vignoles, et al.. QTL for resistance to Salmonella carrier state confirmed in both experimental and commercial chicken lines.. Animal Genetics, 2009, 40 (5), pp.590-7. ⟨10.1111/j.1365-2052.2009.01884.x⟩. ⟨hal-00730059⟩
  • L. Drouilhet, Frédéric Lecerf, L. Bodin, S. Fabre, P. Mulsant. Fine mapping of the FecL locus influencing prolificacy in Lacaune sheep.. Animal Genetics, 2009, 40 (6), pp.804-12. ⟨10.1111/j.1365-2052.2009.01919.x⟩. ⟨hal-00729205⟩
  • C. Beaumont, Frédéric Lecerf, J. Protais, Fanny Calenge, K. Prevost, et al.. An integrated approach of genetic resistance to Salmonella carrier state in fowls: from genetics to genomics and modelling.. Developments in Biologicals, 2008, 132, pp.353-7. ⟨10.1051/lait:1999223⟩. ⟨hal-00729836⟩
  • Olivier Demeure, Frédéric Lecerf. MarkerSet: a marker selection tool based on markers location and informativity in experimental designs. Biochemical Pharmacology, 2008, 24 (17), pp.1639-41. ⟨hal-00729885⟩
  • Olivier O. Demeure, Frédéric Lecerf. MarkerSet: a marker selection tool based on markers location and informativity in experimental designs. BMC Research Notes, 2008, 1, pp.9. ⟨10.1186/1756-0500-1-9⟩. ⟨hal-02656717⟩
  • Colette Désert, Michel Jacques M.J. Duclos, Pierre Blavy, Frédéric Lecerf, François Moreews, et al.. Transcriptome profiling of the feeding-to-fasting transition in chicken liver.. BMC Genomics, 2008, 9 (611), pp.611. ⟨10.1186/1471-2164-9-611⟩. ⟨hal-00729919⟩
  • Stéphane Fabre, A. Pierre, C. Pisselet, Philippe Mulsant, Frédéric Lecerf, et al.. The Booroola mutation in sheep is associated with an alteration of the bone morphogenetic protein receptor-IB functionality. Journal of Endocrinology, 2003, 177, pp.435-444. ⟨hal-02673102⟩
  • Philippe Mulsant, Frédéric Lecerf, Stéphane Fabre, Loys L. Bodin, Jacques Thimonier, et al.. Prolificacy genes in sheep: the French genetic programmes. Reproduction -Cambridge- Supplement-, 2003, 61 (sp.), pp.353-359. ⟨hal-02681853⟩
  • Loys Bodin, Magali San Cristobal, Frédéric Lecerf, Philippe Mulsant, Bernard Bibé, et al.. Segregation of a major gene influencing ovulation in progeny of Lacaune meat sheep. Genetics Selection Evolution, 2002, 34 (4), pp.447-464. ⟨10.1051/gse:2002017⟩. ⟨hal-00894421⟩
  • G.H. Davis, S.A. Galloway, I.K. Ross, S.M. Gregan, J. Ward, et al.. DNA tests in prolific sheep from eight countries provide new evidence on origin of the Booroola (FecB) mutation.. Biology of Reproduction, 2002, 66, pp.1869-1874. ⟨hal-02677370⟩
  • Philippe Monget, Stéphane Fabre, Philippe Mulsant, Frédéric Lecerf, Jean Michel J. M. Elsen, et al.. Regulation of ovarian folliculogenesis by IGF and BMP system in domestic animals. Domestic Animal Endocrinology, 2002, 23, pp.139-154. ⟨hal-02679222⟩
  • Frédéric Lecerf, L. Foggia, Philippe Mulsant, Agnès Bonnet, François Hatey. A novel method to isolate the common fraction of two DNA samples: hybrid specific amplification (HSA). Nucleic Acids Research, 2001, 29 (17), 5 p. ⟨hal-02669851⟩
  • C.R. Largiader, Arnaud Estoup, Frédéric Lecerf, Alexis Champigneulle, René R. Guyomard. Microsatellite analysis of polyandry and spawning site competition in brown trout (Salmo trutta L.). Genetics Selection Evolution, 2001, 33 (S1), pp.S205-S222. ⟨hal-02674726⟩
  • Philippe Mulsant, Frédéric Lecerf, Stéphane Fabre, Laurent L. Schibler, Philippe Monget, et al.. Mutation in bone morphogenetic protein receptor-IB is associated with increased ovulation rate in Booroola Mérino ewes. Proceedings of the National Academy of Sciences of the United States of America, 2001, 98 (9), pp.5104-5109. ⟨hal-02682603⟩
  • Philippe Mulsant, Laurent L. Schibler, Frédéric Lecerf, Florentine Riquet, N. Chitour, et al.. Regional mapping of the FecB (Booroola) region of sheep chromosome 6. Animal Genetics, 1998, suppl. 1, pp.36-37. ⟨hal-02698466⟩

Conference papers26 documents

  • Michèle Tixier-Boichard, Frédéric Lecerf, Philippe Bardou, Christophe C. Klopp. Le projet mille génomes gallus : comment partager les données de séquences pour mieux les utiliser. 13.Journées de la recherche avicole et des palmipèdes à foie gras, Mar 2019, Tours, France. ⟨hal-02737429⟩
  • Aymeric Antoine-Lorquin, Sandrine Lagarrigue, Frédéric Lecerf, Jacques Nicolas, Catherine Belleannée. Comparaison des cibles d’une matrice de score et d’une expression régulière. Application à la recherche de sites de fixation du facteur de transcription LXR. JOBIM 2015- 16e Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2015, Clermont-Ferrand, France. ⟨hal-01197050⟩
  • Pierre-François Roux, Simon Boitard, Anis Djari, Diane Esquerre, Colette Désert, et al.. Combining Genetics Mapping, Selective Sweeps, Genome Re-Requencing and Allele Specific Expression Reveals Several Serious Causative Genes for QTL Regions. International Plant & Animal Genome XXII (PAG), Jan 2014, San Diego, United States. ⟨hal-01193794⟩
  • Pierre-François Roux, Frédéric Lecerf, Anis Djari, Diane Esquerre, Sylvain Marthey, et al.. Using NGS data to characterize genetics of meet-type and egg-type chicken lines. 64th Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2013, Nantes, France. pp.296. ⟨hal-01019218⟩
  • Pierre-François Roux, Yuna Blum, Colette Désert, Anis Djari, Diane Esquerre, et al.. Identification of candidate polymorphism in a QTL region by combining eQTL mapping with NGS data. 64th Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2013, Nantes, France. pp.300. ⟨hal-01019609⟩
  • Pierre-François Roux Roux, Frédéric Lecerf, Anis Djari, Diane D. Esquerre, Sylvain S. Marthey, et al.. Utilisation des NGS pour la caractérisation génétique de lignées de poulet de chair et poules de ponte. 10. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2013, La Rochelle, France. pp.556-561. ⟨hal-01000659⟩
  • Frédéric Lecerf, Anthony Bretaudeau, Olivier Sallou, Colette Désert, Anne Blum, et al.. AnnotQTL: a new tool to gather functional and comparative information on a genomic region. 15th QTLMAS, Institut National de Recherche Agronomique (INRA). UMR Génétique Animale (0598)., May 2011, Rennes, France. ⟨hal-02746678⟩
  • L. Drouilhet, Frédéric Lecerf, P. Mulsant, L. Bodin. Segregation of FecX and FecL gene influencing ovulation rate in different populations of Lacaune sheep. 60. Annual Meeting of the European Association for Animal Production (EAAP), Aug 2009, Wageningen (NL), Netherlands. pp.271. ⟨hal-00730070⟩
  • Frederique Pitel, Alain Vignal, Sophie Leroux, Katia Feve, Florence Vignoles, et al.. Pyroséquençage pour le développement d'EST et de SNP aviaires. 8èmes Journées de la Recherche Avicole, Mar 2009, Paris (FR), France. pp.594-598. ⟨hal-00730058⟩
  • Laurence Drouilhet, Frédéric Lecerf, Philippe Mulsant, Loys L. Bodin. Segregation of FecX and FecL gene influencing ovulation rate in different populations of Lacaune sheep. 60. Annual Meeting of the European Association for Animal Production (EAAP), Aug 2009, Barcelone, Spain. ⟨hal-02755341⟩
  • S. Assaf, O. Demeure, C. Duby, Sandrine Lagarrigue, Frédéric Lecerf. LXRa : un gène candidat positionnel et fonctionnel pour un QTL d'engraissement chez le poulet de chair ?. Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau (FR), France. ⟨hal-00729764⟩
  • Laurence Drouilhet, Frédéric Lecerf, Loys Bodin, Philippe Mulsant. Mutations in two genes are associated with increased ovulation rate and litter size in progeny of Lacaune meat sheep.. 31st Conference of the International Society of Animal Genetics (ISAG), 2008, Amsterdam, pp.Inconnu. ⟨hal-02817121⟩
  • Olivier O. Demeure, Cécile C. Duby, Frédéric Lecerf, S. Assaf, Sandrine Lagarrigue. LXRa : un gène candidat positionnel et fonctionnel pour un QTL d'engraissement chez le poulet de chair ?. Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau. ⟨hal-02753163⟩
  • Fanny Calenge, Frédéric Lecerf, N. Sellier, P. Velge, P. Fravalo, et al.. Des QTL aux gènes de résistance au portage de salmonelles chez le poulet. Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau (FR), France. ⟨hal-00729117⟩
  • Frederique Pitel, Alain Vignal, Sophie S. Leroux, Katia K. Feve, Aurelie Secula Tircazes, et al.. Projet de pyroséquençage pour le développement d'EST et de SNP aviaires.. Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau. ⟨hal-02756545⟩
  • Colette Désert, Pierre Blavy, Frédéric Lecerf, Michel Jacques M.J. Duclos, François Moreews, et al.. Profils transcriptomiques de foies de poulet soumis au jeûne : utilisation d'une puce à ADN de 20000 oligonucléotides.. Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau. ⟨hal-02757873⟩
  • Fanny Calenge, Frédéric Lecerf, Nadine N. Sellier, Philippe Velge, P. Fravalo, et al.. Des QTL aux gènes de résistance au portage de salmonelles chez le poulet.. Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau. ⟨hal-02753088⟩
  • Marc Aubry, Colette Désert, P. Blavy, Frédéric Lecerf, Michel Jacques M.J. Duclos, et al.. Profils transcriptomiques de foies de poulet soumis au jeûne : utilisation d'une puce à ADN de 20000 oligonucléotides. Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau (FR), France. ⟨hal-00729786⟩
  • Laurence Drouilhet, Frédéric Lecerf, Lisa Laetitia Bodin, Philippe Mulsant. Mutations in two genes are associated with increased ovulation rate and litter size in progeny of Lacaune meat sheep. 31st Conference of the International Society of Animal Genetics (ISAG), Jul 2008, Amsterdam (NL), Netherlands. ⟨hal-00729774⟩
  • Catherine C. Beaumont, Frédéric Lecerf, J Protais, Fanny Calenge, Kevin Prevost, et al.. An integrated approach of genetic resistance to Salmonella carrier state in fowls: from genetics to genomics and modelling. International Symposium on Animal Genomics for Animal Health (AGAH), World Organisation for Animal Health (OIE). INT., Oct 2007, Paris, France. ⟨10.1159/000317185⟩. ⟨hal-02752859⟩
  • Catherine C. Beaumont, Frédéric Lecerf, J. Protais, Kevin Prevost, Anne-Christine A.-C. Lalmanach, et al.. An integrated approach of genetic resistance to salmonella carrier-state in fowls: from genetics to genomics and modelization.. International Symposium on Animal Genomics for Animal Health (AGAH), 2007, Paris, pp.Inconnu. ⟨hal-02815742⟩
  • Loys L. Bodin, Frédéric Lecerf, Marion Bessière, Philippe Mulsant. Features of major genes for ovulation in the Lacaune population. 8. World Congress on Genetics Applied to Livestock Production, Aug 2006, Minas Gerais, Belo Horizonte, Brazil. ⟨hal-02755429⟩
  • Loys Bodin, Frédéric Lecerf, C. Pisselet, Magali San Cristobal, Bernard Bibé, et al.. How many mutations are associated with increased ovulation rate and litter size in progeny of Lacaune meat sheep?. International Workshop on Major Genes and QTL in Sheep and Goat, 2003, Toulouse. ⟨hal-02761850⟩
  • Frédéric Lecerf, Philippe Mulsant, Jean Michel J. M. Elsen, Loys L. Bodin. Localisation and mapping of a major gene controlling ovulation rate in Lacaune sheep. 7. World congress on genetics applied to livestock production, Aug 2002, Montpellier, France. ⟨hal-02761601⟩
  • Philippe Monget, Stéphane Fabre, Philippe Mulsant, Frédéric Lecerf, Jean Michel J. M. Elsen, et al.. Regulation of ovarian folliculogenesis by IGF and BMP system in domestic animals. 4. International Conference on Farm Animal Endocrinology, Oct 2001, Parma, Italy. ⟨hal-02832985⟩
  • Philippe Mulsant, Laurent L. Schibler, Frédéric Lecerf, Florentine Riquet, N. Chitour, et al.. Regional mapping of the FecB (Booroola) region of sheep chromosome 6.. XXVI International Conference on Animal Genetics, International Society for Animal Genetics, 1998, Auckland, New Zealand. ⟨hal-02839674⟩

Conference poster10 documents

  • Kévin Muret, Christophe C. Klopp, Valentin Wucher, Diane Esquerre, Fabrice Legeai, et al.. Une nouvelle facette du génome de poule : les genes “longs non-codants". 12. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Apr 2017, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 2017, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras. ⟨hal-01605848⟩
  • Kévin Muret, Christophe C. Klopp, Valentin Wucher, Diane D. Esquerre, Fabrice Legeai, et al.. Long-non coding RNAs repertoire in liver and adipose tissue in chicken. XXIV International Plant & Animal Genome (Pag), Jan 2016, San Diego, United States. 2016. ⟨hal-02799305⟩
  • Pierre-François Roux, Simon Boitard, Anne Blum, Brian Parks, Alexandra Montagner, et al.. La combinaison de cartographie de signatures de sélection, de re-séquençage de génomes et d'analyses d'expression révèle PARK2 et JAG2 comme nouveaux genes candidats régulant l'adiposité. 11. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2015, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 2015, Journées de la Recherche Avicole et Palmipèdes à Foie Gras. ⟨hal-01194116⟩
  • Vanessa Lollivier, Marion Boutinaud, Frederic Dessauge, Frédéric Lecerf. Project of animal biology, the opportunity to sensitize master's students to research approaches. 64. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2013, nantes, France. Wageningen Academic Publishers, Annual Meeting of the European Association for Animal Production, 19, 2013, Annual Meeting of the European Association for Animal Production. ⟨hal-01210502⟩
  • Pierre-François Roux, Simon Boitard, Anis Djari, Diane Esquerre, Sylvain Marthey, et al.. Selective sweeps using hapFLK combined with genome re-sequencing data reveals strong candidate mutations in QTL regions in divergent chicken lines. 8th European Symposium on Poultry Genetics (ESPG), Sep 2013, Venise, Italy. 2013, Proceedings of the 8th European Symposium on Poultry Genetics. ⟨hal-01193795⟩
  • Marion Ouedraogo, Christian Diot, Frédéric Lecerf, S. Le. Relationship between geneome interactions and co-expression structures identified by multivariate analyses of gene expression data. CSH Seventh meeting on Dynamic Organization of Nuclear Function, Sep 2012, Cold Spring Harbor, United States. 2012. ⟨hal-02803391⟩
  • Frédéric Lecerf, Anthony Bretaudeau, Olivier Sallou, Colette Désert, Yuna Blum, et al.. AnnotQTL: a new tool to gather functional and comparative information on a genomic region. 12. Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2011, Paris, France. 2011, JOBIM 2011. ⟨hal-02746728⟩
  • Catherine Beaumont, Frédéric Lecerf, J Protais, K Prevost, Anne-Christine Lalmanach, et al.. An integrated approach of genetic resistance to Salmonella carrier state in fowls : from genetics to genomics and modelization. International Symposium on Animal Genomics for Animal Health, 2007, Paris, France. pp.Inconnu, 2007. ⟨hal-02815808⟩
  • Philippe Monget, Stéphane Fabre, Philippe Mulsant, Frédéric Lecerf, Jean Michel J. M. Elsen, et al.. Growth factors and ovarian physiology in domestic animals. 6. Journées de la FFER, Sep 2001, Lyon, France. 1 p., 2001. ⟨hal-02832299⟩
  • Philippe Mulsant, Laurent L. Schibler, Frédéric Lecerf, Juliette Riquet, N. Chitour, et al.. Regional mapping of the FecB (Booroola) region of sheep chromosome 6. 25. International conference on animal genetics, Aug 1998, Auckland, New Zealand. 1 p., 1998. ⟨hal-02839062⟩