Frédéric Lecerf

Associate Professor Animal Genetic Lab UMR 1348 Institut Agro - INRAE PEGASE

Documents

Publications

	Enriched atlas of lncRNA and protein-coding genes for the GRCg7b chicken assembly and its functional annotation across 47 tissues Fabien Degalez , Mathieu Charles , Sylvain Foissac , Haijuan Zhou , Dailu Guan Scientific Reports, 2024, 14 (1), pp.6588. ⟨10.1038/s41598-024-56705-y⟩ Journal articles hal-04575157v1
	Variant calling and genotyping accuracy of ddRAD-seq: Comparison with 20X WGS in layers Mathilde Doublet , Fabien Degalez , Sandrine Lagarrigue , Laetitia Lagoutte , Elise Gueret PLoS ONE, 2024, 19 (7), pp.e0298565. ⟨10.1371/journal.pone.0298565⟩ Journal articles hal-04666242v1
	Restriction site-associated DNA sequencing technologies as an alternative to low-density SNP chips for genomic selection: a simulation study in layer chickens Florian Herry , Frédéric Herault , Frédéric Lecerf , Laetitia Lagoutte , Mathilde Doublet BMC Genomics, 2023, 24 (1), pp.271. ⟨10.1186/s12864-023-09321-5⟩ Journal articles hal-04131807v1
	Watch out for a second SNP: focus on multi-nucleotide variants in coding regions and rescued stop-gained Fabien Degalez , Frédéric Jehl , Kévin Muret , Maria Bernard , Frédéric Lecerf Frontiers in Genetics, 2021, 12, pp.659287. ⟨10.3389/fgene.2021.659287⟩ Journal articles hal-03280040v1
	RNA-Seq Data for Reliable SNP Detection and Genotype Calling Frédéric Jehl , Fabien Degalez , Frédéric Lecerf , Maria Bernard , Laetitia Lagoutte Frontiers in Genetics, 2021, 12, pp.655707. ⟨10.3389/fgene.2021.655707⟩ Journal articles hal-03276149v1
	Le projet « Mille Génomes Gallus » : partager les données de séquences pour mieux les utiliser Michèle Tixier-Boichard , Frédéric Lecerf , Frédéric Herault , Philippe Bardou , Christophe Klopp INRAE Productions Animales, 2020, 33 (3), pp.189-202. ⟨10.20870/productions-animales.2020.33.3.4564⟩ Journal articles hal-03103324v1
	Long noncoding RNA repertoire in chicken liver and adipose tissue Kévin Muret , Christophe Klopp , Valentin Wucher , Diane Esquerré , Fabrice Legeai Genetics Selection Evolution, 2017, 49 (1), pp.6. ⟨10.1186/s12711-016-0275-0⟩ Journal articles hal-01431420v1
	Combined QTL and selective sweep mappings with coding SNP annotation and cis-eQTL analysis revealed PARK2 and JAG2 as new candidate genes for adiposity regulation. Pierre-François Roux , Simon Boitard , Anne Blum , Brian Parks , Alexandra Montagner G3, 2015, 5, pp.517-529. ⟨10.1534/g3.115.016865⟩ Journal articles hal-01194040v1
	Limited RNA editing in exons of mouse liver and adipose Sandrine Lagarrigue , Farhad Hormozdiari , Lisa Martin , Frédéric Lecerf , Yehudit Hasin Genetics, 2013, 193 (4), pp.1107-1115. ⟨10.1534/genetics.112.149054⟩ Journal articles hal-01207749v1
	The GAG database: A new resource to gather genomic annotation cross-references Thomas Obadia , Olivier Sallou , Marion Ouedraogo , Grégory Guernec , Frédéric Lecerf Gene, 2013, 527 (2), pp.503-509. ⟨10.1016/j.gene.2013.06.063⟩ Journal articles hal-01207750v1
	The duplicated genes database: identification and functional annotation of co-localised duplicated genes across genomes Marion Ouedraogo , Charles Bettembourg , Anthony Bretaudeau , Olivier Sallou , Christian Diot PLoS ONE, 2012, 7 (11), pp.e50653. ⟨10.1371/journal.pone.0050653⟩ Journal articles hal-00841104v1
	Regulation of LPCAT3 by LXR. O. Demeure , Frédéric Lecerf , C. Duby , Colette Désert , S. Ducheix Gene, 2011, 470 (1-2), pp.7-11. ⟨10.1016/j.gene.2010.09.002⟩ Journal articles hal-00729271v1
	AnnotQTL: a new tool to gather functional and comparative information on a genomic region Frédéric Lecerc , Anthony Bretaudeau , Olivier Sallou , Colette Désert , Yuna Blum Nucleic Acids Research, 2011, 39 (Suppl 2), open access. ⟨10.1093/nar/gkr361⟩ Journal articles hal-00597398v1
	Fine mapping of the FecL locus influencing prolificacy in Lacaune sheep. L. Drouilhet , Frédéric Lecerf , L. Bodin , S. Fabre , P. Mulsant Animal Genetics, 2009, 40 (6), pp.804-12. ⟨10.1111/j.1365-2052.2009.01919.x⟩ Journal articles hal-00729205v1
	Fine mapping of the FecL locus influencing prolificacy in Lacaune sheep L. Drouilhet , F. Lecerf , L. Bodin , Stéphane Fabre , P. Mulsant Animal Genetics, 2009, 40 (6), pp.804-812. ⟨10.1111/j.1365-2052.2009.01919.x⟩ Journal articles hal-03137538v1
	QTL for resistance to Salmonella carrier state confirmed in both experimental and commercial chicken lines. Fanny Calenge , Frédéric Lecerf , Julie Demars , K. Feve , F. Vignoles Animal Genetics, 2009, 40 (5), pp.590-7. ⟨10.1111/j.1365-2052.2009.01884.x⟩ Journal articles hal-00730059v1
	MarkerSet: a marker selection tool based on markers location and informativity in experimental designs Olivier Demeure , Frédéric Lecerf Biochemical Pharmacology, 2008, 24 (17), pp.1639-41 Journal articles hal-00729885v1
	An integrated approach of genetic resistance to Salmonella carrier state in fowls: from genetics to genomics and modelling. C. Beaumont , Frédéric Lecerf , J. Protais , Fanny Calenge , K. Prevost Developments in Biologicals, 2008, 132, pp.353-7. ⟨10.1051/lait:1999223⟩ Journal articles hal-00729836v1
	Transcriptome profiling of the feeding-to-fasting transition in chicken liver. Colette Désert , Michel Jacques M.J. Duclos , Pierre Blavy , Frédéric Lecerf , François Moreews BMC Genomics, 2008, 9 (611), pp.611. ⟨10.1186/1471-2164-9-611⟩ Journal articles hal-00729919v1
	MarkerSet: a marker selection tool based on markers location and informativity in experimental designs Olivier O. Demeure , Frédéric Lecerf BMC Research Notes, 2008, 1, pp.9. ⟨10.1186/1756-0500-1-9⟩ Journal articles hal-02656717v1
	The Booroola mutation in sheep is associated with an alteration of the bone morphogenetic protein receptor-IB functionality Stéphane Fabre , A. Pierre , C. Pisselet , Philippe Mulsant , Frédéric Lecerf Journal of Endocrinology, 2003, 177, pp.435-444 Journal articles hal-02673102v1
	Prolificacy genes in sheep: the French genetic programmes Philippe Mulsant , Frédéric Lecerf , Stéphane Fabre , Loys L. Bodin , Jacques Thimonier Reproduction [Cambridge]. Supplement, 2003, 61 (sp.), pp.353-359 Journal articles hal-02681853v1
	Segregation of a major gene influencing ovulation in progeny of Lacaune meat sheep Loys Bodin , Magali San Cristobal , Frédéric Lecerf , Philippe Mulsant , Bernard Bibé Genetics Selection Evolution, 2002, 34 (4), pp.447-464. ⟨10.1051/gse:2002017⟩ Journal articles hal-00894421v1
	Regulation of ovarian folliculogenesis by IGF and BMP system in domestic animals Philippe Monget , Stéphane Fabre , Philippe Mulsant , Frédéric Lecerf , Jean Michel J. M. Elsen Domestic Animal Endocrinology, 2002, 23, pp.139-154 Journal articles hal-02679222v1
	DNA tests in prolific sheep from eight countries provide new evidence on origin of the Booroola (FecB) mutation. G.H. Davis , S.A. Galloway , I.K. Ross , S.M. Gregan , J. Ward Biology of Reproduction, 2002, 66, pp.1869-1874 Journal articles hal-02677370v1
	A novel method to isolate the common fraction of two DNA samples: hybrid specific amplification (HSA) Frédéric Lecerf , L. Foggia , Philippe Mulsant , Agnès Bonnet , François Hatey Nucleic Acids Research, 2001, 29 (17), 5 p Journal articles hal-02669851v1
	Mutation in bone morphogenetic protein receptor-IB is associated with increased ovulation rate in Booroola Mérino ewes Philippe Mulsant , Frédéric Lecerf , Stéphane Fabre , Laurent L. Schibler , Philippe Monget Proceedings of the National Academy of Sciences of the United States of America, 2001, 98 (9), pp.5104-5109 Journal articles hal-02682603v1
	Microsatellite analysis of polyandry and spawning site competition in brown trout (Salmo trutta L.) C.R. Largiader , Arnaud Estoup , Frédéric Lecerf , Alexis Champigneulle , René R. Guyomard Genetics Selection Evolution, 2001, 33 (S1), pp.S205-S222 Journal articles hal-02674726v1
	Regional mapping of the FecB (Booroola) region of sheep chromosome 6 Philippe Mulsant , Laurent L. Schibler , Frédéric Lecerf , Florentine Riquet , N. Chitour Animal Genetics, 1998, suppl. 1, pp.36-37 Journal articles hal-02698466v1

	A lncRNA gene-enriched atlas for GRCg7b chicken genome and its functional annotation across 47 tissues Fabien Degalez , Mathieu Charles , Sylvain Foissac , Haijuan Zhou , Dailu Guan 39. Congress of the international society for animal genetics (ISAG), Jul 2023, Cape Town, South Africa. pp.47 Conference papers hal-04217589v1
	RNA-SEQ data for reliable SNP detection and genotype calling in livestock species: interest for coding variant characterization and cis-regulation analysis by allele-specific expression Frédéric Jehl , Fabien Degalez , Maria Bernard , Frédéric Lecerf , Laetitia Lagoutte 26. World's Poultry Congress (WPC), Aug 2022, Paris, France. pp.405 Conference papers hal-04132375v1
	RNA-seq data for detecting reliable SNPs & genotypes in livestock species: interest for coding variant characterization and cis-regulation analysis by allele-specific expression ! Frédéric Jehl , Fabien Degalez , Maria Bernard , Frédéric Lecerf , Laetitia Lagoutte World Poultry Congress (WPC) 2022, Aug 2022, Paris, France Conference papers hal-04258396v1
	Le projet mille génomes gallus : comment partager les données de séquences pour mieux les utiliser Michèle Tixier-Boichard , Frédéric Lecerf , Philippe Bardou , Christophe Klopp 13.Journées de la recherche avicole et des palmipèdes à foie gras, Mar 2019, Tours, France Conference papers hal-02737429v1
	Comparaison des cibles d’une matrice de score et d’une expression régulière. Application à la recherche de sites de fixation du facteur de transcription LXR Aymeric Antoine-Lorquin , Sandrine Lagarrigue , Frédéric Lecerf , Jacques Nicolas , Catherine Belleannée JOBIM 2015- 16e Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2015, Clermont-Ferrand, France Conference papers hal-01197050v1
	Combining Genetics Mapping, Selective Sweeps, Genome Re-Requencing and Allele Specific Expression Reveals Several Serious Causative Genes for QTL Regions Pierre-François Roux , Simon Boitard , Anis Djari , Diane Esquerre , Colette Désert International Plant & Animal Genome XXII (PAG), Jan 2014, San Diego, United States Conference papers hal-01193794v1
	Using NGS data to characterize genetics of meet-type and egg-type chicken lines Pierre-François Roux , Frédéric Lecerf , Anis Djari , Diane Esquerre , Sylvain Marthey 64th Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2013, Nantes, France. pp.296 Conference papers hal-01019218v1
	Utilisation des NGS pour la caractérisation génétique de lignées de poulet de chair et poules de ponte Pierre-François Roux Roux , Frédéric Lecerf , Anis Djari , Diane D. Esquerre , Sylvain S. Marthey 10. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2013, La Rochelle, France. pp.556-561 Conference papers hal-01000659v1
	Identification of candidate polymorphism in a QTL region by combining eQTL mapping with NGS data Pierre-François Roux , Yuna Blum , Colette Désert , Anis Djari , Diane Esquerre 64th Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2013, Nantes, France. pp.300 Conference papers hal-01019609v1
	AnnotQTL: a new tool to gather functional and comparative information on a genomic region Frédéric Lecerf , Anthony Bretaudeau , Olivier Sallou , Colette Désert , Anne Blum 15th QTLMAS, Institut National de Recherche Agronomique (INRA). UMR Génétique Animale (0598)., May 2011, Rennes, France Conference papers hal-02746678v1
	Segregation of FecX and FecL gene influencing ovulation rate in different populations of Lacaune sheep Laurence Drouilhet , Frédéric Lecerf , Philippe Mulsant , Loys L. Bodin 60. Annual Meeting of the European Association for Animal Production (EAAP), Aug 2009, Barcelone, Spain Conference papers hal-02755341v1
	Segregation of FecX and FecL gene influencing ovulation rate in different populations of Lacaune sheep L. Drouilhet , Frédéric Lecerf , P. Mulsant , L. Bodin 60. Annual Meeting of the European Association for Animal Production (EAAP), Aug 2009, Wageningen (NL), Netherlands. pp.271 Conference papers hal-00730070v1
	Pyroséquençage pour le développement d'EST et de SNP aviaires Frederique Pitel , Alain Vignal , Sophie Leroux , Katia Feve , Florence Vignoles 8èmes Journées de la Recherche Avicole, Mar 2009, Paris (FR), France. pp.594-598 Conference papers hal-00730058v1
	LXRa : un gène candidat positionnel et fonctionnel pour un QTL d'engraissement chez le poulet de chair ? S. Assaf , O. Demeure , C. Duby , Sandrine Lagarrigue , Frédéric Lecerf Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau (FR), France Conference papers hal-00729764v1
	Mutations in two genes are associated with increased ovulation rate and litter size in progeny of Lacaune meat sheep Laurence Drouilhet , Frédéric Lecerf , Lisa Laetitia Bodin , Philippe Mulsant 31st Conference of the International Society of Animal Genetics (ISAG), Jul 2008, Amsterdam (NL), Netherlands Conference papers hal-00729774v1
	Mutations in two genes are associated with increased ovulation rate and litter size in progeny of Lacaune meat sheep. Laurence Drouilhet , Frédéric Lecerf , Loys Bodin , Philippe Mulsant 31st Conference of the International Society of Animal Genetics (ISAG), 2008, Amsterdam, pp.Inconnu Conference papers hal-02817121v1
	Des QTL aux gènes de résistance au portage de salmonelles chez le poulet. Fanny Calenge , Frédéric Lecerf , Nadine N. Sellier , Philippe Velge , P. Fravalo Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau Conference papers hal-02753088v1
	Profils transcriptomiques de foies de poulet soumis au jeûne : utilisation d'une puce à ADN de 20000 oligonucléotides Marc Aubry , Colette Désert , P. Blavy , Frédéric Lecerf , Michel Jacques M.J. Duclos Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau, France Conference papers hal-00729786v1
	Projet de pyroséquençage pour le développement d'EST et de SNP aviaires. Frederique Pitel , Alain Vignal , Sophie S. Leroux , Katia K. Feve , Aurelie Secula Tircazes Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau Conference papers hal-02756545v1
	Des QTL aux gènes de résistance au portage de salmonelles chez le poulet Fanny Calenge , Frédéric Lecerf , N. Sellier , P. Velge , P. Fravalo Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau (FR), France Conference papers hal-00729117v1
	LXRa : un gène candidat positionnel et fonctionnel pour un QTL d'engraissement chez le poulet de chair ? Olivier O. Demeure , Cécile C. Duby , Frédéric Lecerf , S. Assaf , Sandrine Lagarrigue Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau Conference papers hal-02753163v1
	An integrated approach of genetic resistance to Salmonella carrier state in fowls: from genetics to genomics and modelling Catherine C. Beaumont , Frédéric Lecerf , J Protais , Fanny Calenge , Kevin Prevost International Symposium on Animal Genomics for Animal Health (AGAH), World Organisation for Animal Health (OIE). INT., Oct 2007, Paris, France. ⟨10.1159/000317185⟩ Conference papers hal-02752859v1
	An integrated approach of genetic resistance to salmonella carrier-state in fowls: from genetics to genomics and modelization. Catherine C. Beaumont , Frédéric Lecerf , J. Protais , Kevin Prevost , Anne-Christine Lalmanach International Symposium on Animal Genomics for Animal Health (AGAH), 2007, Paris, pp.Inconnu Conference papers hal-02815742v1
	Features of major genes for ovulation in the Lacaune population Loys L. Bodin , Frédéric Lecerf , Marion Bessière , Philippe Mulsant 8. World Congress on Genetics Applied to Livestock Production, Aug 2006, Minas Gerais, Belo Horizonte, Brazil Conference papers hal-02755429v1
	How many mutations are associated with increased ovulation rate and litter size in progeny of Lacaune meat sheep? Loys Bodin , Frédéric Lecerf , C. Pisselet , Magali San Cristobal , Bernard Bibé International Workshop on Major Genes and QTL in Sheep and Goat, 2003, Toulouse Conference papers hal-02761850v1
	Localisation and mapping of a major gene controlling ovulation rate in Lacaune sheep Frédéric Lecerf , Philippe Mulsant , Jean Michel J. M. Elsen , Loys L. Bodin 7. World congress on genetics applied to livestock production, Aug 2002, Montpellier, France Conference papers hal-02761601v1
	Regulation of ovarian folliculogenesis by IGF and BMP system in domestic animals Philippe Monget , Stéphane Fabre , Philippe Mulsant , Frédéric Lecerf , Jean Michel J. M. Elsen 4. International Conference on Farm Animal Endocrinology, Oct 2001, Parma, Italy Conference papers hal-02832985v1
	Regional mapping of the FecB (Booroola) region of sheep chromosome 6. Philippe Mulsant , Laurent L. Schibler , Frédéric Lecerf , Florentine Riquet , N. Chitour XXVI International Conference on Animal Genetics, International Society for Animal Genetics, 1998, Auckland, New Zealand Conference papers hal-02839674v1

	A lncRNA gene-enriched atlas for GRCg7b chicken genome and its functional annotation across 47 tissues Fabien Degalez , Mathieu Charles , Sylvain Foissac , Haijuan Zhou , Dailu Guan 39. Congress of the international society for animal genetics (ISAG), Jul 2023, Cape Town, South Africa. , pp.78, 2023, Abstracts Conference poster hal-04217582v1
	Variant calling and genotyping accuracy of ddRAD-seq: comparison with WGS in layers Mathilde Doublet , Frédéric Lecerf , Fabien Degalez , Sandrine Lagarrigue , Laetitia Lagoutte 74. Annual meeting of the european federation of animal science (EAAP), Aug 2023, Lyon, France. Wageningen Academic Publishers, Book of abstracts, 29, pp.796, 2023, Book of abstracts of the 74th annual meeting of the european federation of animal science Conference poster hal-04286708v1
	A lncRNA gene-enriched atlas for GRCg7b chicken genome using Ensembl, RefSeq and two FAANG databases Fabien Degalez , Mathieu Charles , Sylvain Foissac , Zhou Haijuan , Guan Dailu 74. Annual meeting of the european federation of animal science (EAAP), Aug 2023, Lyon, France. Wageningen Academic Publishers, Book of abstracts, 29, pp.932, 2023, Book of abstracts of the 74st annual meeting of the european federation of animal science Conference poster hal-04217567v1
	Une nouvelle facette du génome de poule : les genes “longs non-codants" Kévin Muret , Christophe Klopp , Valentin Wucher , Diane Esquerre , Fabrice Legeai 12. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Apr 2017, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 2017, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras Conference poster hal-01605848v1
	Long-non coding RNAs repertoire in liver and adipose tissue in chicken Kévin Muret , Christophe Klopp , Valentin Wucher , Diane D. Esquerre , Fabrice Legeai XXIV International Plant & Animal Genome (Pag), Jan 2016, San Diego, United States. 2016 Conference poster hal-02799305v1
	La combinaison de cartographie de signatures de sélection, de re-séquençage de génomes et d'analyses d'expression révèle PARK2 et JAG2 comme nouveaux genes candidats régulant l'adiposité Pierre-François Roux , Simon Boitard , Anne Blum , Brian Parks , Alexandra Montagner 11. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2015, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 2015, Journées de la Recherche Avicole et Palmipèdes à Foie Gras Conference poster hal-01194116v1
	Selective sweeps using hapFLK combined with genome re-sequencing data reveals strong candidate mutations in QTL regions in divergent chicken lines Pierre-François Roux , Simon Boitard , Anis Djari , Diane Esquerre , Sylvain Marthey 8th European Symposium on Poultry Genetics (ESPG), Sep 2013, Venise, Italy. 2013, Proceedings of the 8th European Symposium on Poultry Genetics Conference poster hal-01193795v1
	Project of animal biology, the opportunity to sensitize master's students to research approaches Vanessa Lollivier , Marion Boutinaud , Frederic Dessauge , Frédéric Lecerf 64. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2013, nantes, France. Wageningen Academic Publishers, Annual Meeting of the European Association for Animal Production, 19, 2013, Annual Meeting of the European Association for Animal Production Conference poster hal-01210502v1
	Relationship between geneome interactions and co-expression structures identified by multivariate analyses of gene expression data Marion Ouedraogo , Christian Diot , Frédéric Lecerf , S. Le CSH Seventh meeting on Dynamic Organization of Nuclear Function, Sep 2012, Cold Spring Harbor, United States. 2012 Conference poster hal-02803391v1
	AnnotQTL: a new tool to gather functional and comparative information on a genomic region Frédéric Lecerf , Anthony Bretaudeau , Olivier Sallou , Colette Désert , Yuna Blum 12. Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2011, Paris, France. 2011, JOBIM 2011 Conference poster hal-02746728v1
	An integrated approach of genetic resistance to Salmonella carrier state in fowls : from genetics to genomics and modelization Catherine Beaumont , Frédéric Lecerf , J Protais , K Prevost , Anne-Christine Lalmanach International Symposium on Animal Genomics for Animal Health, 2007, Paris, France. pp.Inconnu, 2007 Conference poster hal-02815808v1
	Growth factors and ovarian physiology in domestic animals Philippe Monget , Stéphane Fabre , Philippe Mulsant , Frédéric Lecerf , Jean Michel J. M. Elsen 6. Journées de la FFER, Sep 2001, Lyon, France. 1 p., 2001 Conference poster hal-02832299v1
	Regional mapping of the FecB (Booroola) region of sheep chromosome 6 Philippe Mulsant , Laurent L. Schibler , Frédéric Lecerf , Juliette Riquet , N. Chitour 25. International conference on animal genetics, Aug 1998, Auckland, New Zealand. 1 p., 1998 Conference poster hal-02839062v1

	L'aviculture, une filière d'avenir Sandrine Lagarrigue , Isabelle Bouvarel , Michel Jacques M.J. Duclos , Francoise Nau , Frédéric Lecerf L'aviculture, une filière d'avenir, 2018 Other publications hal-04216732v1

Frédéric Lecerf

Publications

Enriched atlas of lncRNA and protein-coding genes for the GRCg7b chicken assembly and its functional annotation across 47 tissues

Variant calling and genotyping accuracy of ddRAD-seq: Comparison with 20X WGS in layers

Restriction site-associated DNA sequencing technologies as an alternative to low-density SNP chips for genomic selection: a simulation study in layer chickens

Watch out for a second SNP: focus on multi-nucleotide variants in coding regions and rescued stop-gained

RNA-Seq Data for Reliable SNP Detection and Genotype Calling

Le projet « Mille Génomes Gallus » : partager les données de séquences pour mieux les utiliser

Long noncoding RNA repertoire in chicken liver and adipose tissue

Combined QTL and selective sweep mappings with coding SNP annotation and cis-eQTL analysis revealed PARK2 and JAG2 as new candidate genes for adiposity regulation.

Limited RNA editing in exons of mouse liver and adipose

The GAG database: A new resource to gather genomic annotation cross-references

The duplicated genes database: identification and functional annotation of co-localised duplicated genes across genomes

Regulation of LPCAT3 by LXR.

AnnotQTL: a new tool to gather functional and comparative information on a genomic region

Fine mapping of the FecL locus influencing prolificacy in Lacaune sheep.

Fine mapping of the FecL locus influencing prolificacy in Lacaune sheep

QTL for resistance to Salmonella carrier state confirmed in both experimental and commercial chicken lines.

MarkerSet: a marker selection tool based on markers location and informativity in experimental designs

An integrated approach of genetic resistance to Salmonella carrier state in fowls: from genetics to genomics and modelling.

Transcriptome profiling of the feeding-to-fasting transition in chicken liver.

MarkerSet: a marker selection tool based on markers location and informativity in experimental designs

The Booroola mutation in sheep is associated with an alteration of the bone morphogenetic protein receptor-IB functionality

Prolificacy genes in sheep: the French genetic programmes

Segregation of a major gene influencing ovulation in progeny of Lacaune meat sheep

Regulation of ovarian folliculogenesis by IGF and BMP system in domestic animals

DNA tests in prolific sheep from eight countries provide new evidence on origin of the Booroola (FecB) mutation.

A novel method to isolate the common fraction of two DNA samples: hybrid specific amplification (HSA)

Mutation in bone morphogenetic protein receptor-IB is associated with increased ovulation rate in Booroola Mérino ewes

Microsatellite analysis of polyandry and spawning site competition in brown trout (Salmo trutta L.)

Regional mapping of the FecB (Booroola) region of sheep chromosome 6

A lncRNA gene-enriched atlas for GRCg7b chicken genome and its functional annotation across 47 tissues

RNA-SEQ data for reliable SNP detection and genotype calling in livestock species: interest for coding variant characterization and cis-regulation analysis by allele-specific expression

RNA-seq data for detecting reliable SNPs & genotypes in livestock species: interest for coding variant characterization and cis-regulation analysis by allele-specific expression !

Le projet mille génomes gallus : comment partager les données de séquences pour mieux les utiliser

Comparaison des cibles d’une matrice de score et d’une expression régulière. Application à la recherche de sites de fixation du facteur de transcription LXR

Combining Genetics Mapping, Selective Sweeps, Genome Re-Requencing and Allele Specific Expression Reveals Several Serious Causative Genes for QTL Regions

Using NGS data to characterize genetics of meet-type and egg-type chicken lines

Utilisation des NGS pour la caractérisation génétique de lignées de poulet de chair et poules de ponte

Identification of candidate polymorphism in a QTL region by combining eQTL mapping with NGS data

AnnotQTL: a new tool to gather functional and comparative information on a genomic region

Segregation of FecX and FecL gene influencing ovulation rate in different populations of Lacaune sheep

Segregation of FecX and FecL gene influencing ovulation rate in different populations of Lacaune sheep

Pyroséquençage pour le développement d'EST et de SNP aviaires

LXRa : un gène candidat positionnel et fonctionnel pour un QTL d'engraissement chez le poulet de chair ?

Mutations in two genes are associated with increased ovulation rate and litter size in progeny of Lacaune meat sheep

Mutations in two genes are associated with increased ovulation rate and litter size in progeny of Lacaune meat sheep.

Des QTL aux gènes de résistance au portage de salmonelles chez le poulet.

Profils transcriptomiques de foies de poulet soumis au jeûne : utilisation d'une puce à ADN de 20000 oligonucléotides

Projet de pyroséquençage pour le développement d'EST et de SNP aviaires.

Des QTL aux gènes de résistance au portage de salmonelles chez le poulet

LXRa : un gène candidat positionnel et fonctionnel pour un QTL d'engraissement chez le poulet de chair ?

An integrated approach of genetic resistance to Salmonella carrier state in fowls: from genetics to genomics and modelling

An integrated approach of genetic resistance to salmonella carrier-state in fowls: from genetics to genomics and modelization.

Features of major genes for ovulation in the Lacaune population

How many mutations are associated with increased ovulation rate and litter size in progeny of Lacaune meat sheep?

Localisation and mapping of a major gene controlling ovulation rate in Lacaune sheep

Regulation of ovarian folliculogenesis by IGF and BMP system in domestic animals

Regional mapping of the FecB (Booroola) region of sheep chromosome 6.

A lncRNA gene-enriched atlas for GRCg7b chicken genome and its functional annotation across 47 tissues

Variant calling and genotyping accuracy of ddRAD-seq: comparison with WGS in layers

A lncRNA gene-enriched atlas for GRCg7b chicken genome using Ensembl, RefSeq and two FAANG databases

Une nouvelle facette du génome de poule : les genes “longs non-codants"

Long-non coding RNAs repertoire in liver and adipose tissue in chicken

La combinaison de cartographie de signatures de sélection, de re-séquençage de génomes et d'analyses d'expression révèle PARK2 et JAG2 comme nouveaux genes candidats régulant l'adiposité

Selective sweeps using hapFLK combined with genome re-sequencing data reveals strong candidate mutations in QTL regions in divergent chicken lines

Project of animal biology, the opportunity to sensitize master's students to research approaches

Relationship between geneome interactions and co-expression structures identified by multivariate analyses of gene expression data

AnnotQTL: a new tool to gather functional and comparative information on a genomic region

An integrated approach of genetic resistance to Salmonella carrier state in fowls : from genetics to genomics and modelization

Growth factors and ovarian physiology in domestic animals

Regional mapping of the FecB (Booroola) region of sheep chromosome 6

L'aviculture, une filière d'avenir