Gabriel Costa Monteiro Moreira

Identifiants chercheurs

IdHAL :

gabriel-costa-monteiro-moreira

ORCID :

0000-0003-3139-1027

ResearcherID :

http://www.researcherid.com/rid/K-1884-2016

Publications

Article dans une revue (40)

Empowering bioinformatics communities with Nextflow and nf-core Björn E Langer,Andreia Amaral,Marie-Odile Baudement,Franziska Bonath,Mathieu Charleset al. Genome Biology, 2025, 26 (1), pp.228. ⟨10.1186/s13059-025-03673-9⟩ Article dans une revue (article de synthèse) hal-05224445v1
Genetic regulation of sperm DNA methylation in cattle through meQTL mapping Corentin Fouéré,Valentin Costes,Chris Hozé,Amrita Raja Ravi Shankar,Florian Besnardet al. BMC Genomics, 2025, 26 (1), pp.771. ⟨10.1186/s12864-025-11934-x⟩ Article dans une revue hal-05220883v1
Elucidating the landscape of genome-wide chromatin interaction sites of the lncRNA TUG1 in bovine cell lines and liver tissue Rosemarie Weikard,Raghu Bhushan,Doreen Becker,Frieder Hadlich,Carole Charlieret al. Genomics, 2025, 117 (6), pp.111135. ⟨10.1016/j.ygeno.2025.111135⟩ Article dans une revue hal-05351009v1
Novel Candidate Genes Involved in an Initial Stage of White Striping Development in Broiler Chickens Suelen Fernandes Padilha,Adriana Mércia Guaratini Ibelli,Jane Oliveira Peixoto,Maurício Egídio Cantão,Gabriel Costa Monteiro Moreiraet al. Animals, 2024, 14, ⟨10.3390/ani14162379⟩ Article dans une revue hal-04683411v1
Innovative construction of the first reliable catalogue of bovine circular RNAs Annie Robic,Frieder Hadlich,Gabriel Costa Monteiro Moreira,Emily Louise Clark,Graham Plastowet al. RNA Biology, 2024, 21 (1), pp. 52-74. ⟨10.1080/15476286.2024.2375090⟩ Article dans une revue hal-04645720v1
GWAS reveals determinants of mobilization rate and dynamics of an active endogenous retrovirus of cattle Lijing Tang,Benjamin Swedlund,Sebastien Dupont,Chad Harland,Gabriel Costa Monteiro Moreiraet al. Nature Communications, 2024, 15 (1), pp. 2154. ⟨10.1038/s41467-024-46434-1⟩ Article dans une revue hal-04523102v1
Key co-expressed genes correlated with blood serum parameters of pigs fed with different fatty acid profile diets Simara Larissa Fanalli,Júlia Dezen Gomes,Francisco José de Novais,Izally Carvalho Gervásio,Heidge Fukumasuet al. Frontiers in Genetics, 2024, 15, ⟨10.3389/fgene.2024.1394971⟩ Article dans une revue hal-04634073v1
Identification of eQTLs using different sets of single nucleotide polymorphisms associated with carcass and body composition traits in pigs Felipe André Oliveira Freitas,Luiz Brito,Simara Larissa Fanalli,Janaína Lustosa Gonçales,Bruna Pereira Martins da Silvaet al. BMC Genomics, 2024, 25 (1), pp.14. ⟨10.1186/s12864-023-09863-8⟩ Article dans une revue hal-04562463v1
Brain fatty acid and transcriptome profiles of pig fed diets with different levels of soybean oil Bruna Pereira da Silva,Simara Larissa Fanalli,Julia Dezen Gomes,Vivian Vezzoni de Almeida,Heidge Fukumasuet al. BMC Genomics, 2023, 24 (1), pp.91. ⟨10.1186/s12864-023-09188-6⟩ Article dans une revue hal-04562882v1
High-resolution structural variants catalogue in a large-scale whole genome sequenced bovine family cohort data Young-Lim Lee,Mirte Bosse,Haruko Takeda,Gabriel Costa Monteiro Moreira,Latifa Karimet al. BMC Genomics, 2023, 24 (1), pp.225. ⟨10.1186/s12864-023-09259-8⟩ Article dans une revue hal-04562865v1
Check-All-That-Apply method for sensory characterization of pork from immunocastrated male pigs fed different oil sources Julia Pereira Martins Da Silva,Vivian Vezzoni Almeida,Allan Paul Schinckel,Ariana Nascimento Meira,Gabriel Costa Monteiro Moreiraet al. Scientia Agricola, 2023, 80, ⟨10.1590/1678-992x-2022-0019⟩ Article dans une revue hal-04562896v1
Transcriptome profile of skeletal muscle using different sources of dietary fatty acids in male pigs Simara Larissa Fanalli,Bruna Pereira Martins da Silva,Julia Dezen Gomes,Vivian Vezzoni de Almeida,Gabriel Costa Monteiro Moreiraet al. Functional and Integrative Genomics, 2023, 23 (1), pp.73. ⟨10.1007/s10142-023-00997-2⟩ Article dans une revue hal-04562878v1
RNA-seq transcriptome profiling of pigs’ liver in response to diet with different sources of fatty acids Simara Larissa Fanalli,Bruna Pereira Martins Da Silva,Julia Dezen Gomes,Mariah Castro Durval,Vivian Vezzoni De Almeidaet al. Frontiers in Genetics, 2023, 14, ⟨10.3389/fgene.2023.1053021⟩ Article dans une revue hal-04562888v1
Estimation of breeding values using different densities of SNP to inform kinship in broiler chickens Mayara Salvian,Gabriel Costa Monteiro Moreira,Robson Mateus Freitas Silveira,Ândrea Plotzki Reis,Brayan Dias d'Auriaet al. Livestock Science, 2023, 267, pp.105124. ⟨10.1016/j.livsci.2022.105124⟩ Article dans une revue hal-04563197v1
An organism-wide ATAC-seq peak catalog for the bovine and its use to identify regulatory variants Can Yuan,Lijing Tang,Thomas Lopdell,Vyacheslav Petrov,Claire Oget-Ebradet al. Genome Research, 2023, 33 (10), pp.1848-1864. ⟨10.1101/gr.277947.123⟩ Article dans une revue hal-04562841v1
Improving the annotation of the cattle genome by annotating transcription start sites in a diverse set of tissues and populations using Cap Analysis Gene Expression sequencing Mazdak Salavati,Richard Clark,Doreen Becker,Christa Kühn,Graham Plastowet al. G3, 2023, 13 (8), ⟨10.1093/g3journal/jkad108⟩ Article dans une revue hal-04562850v1
The rate of de novo structural variation is increased in in vitro–produced offspring and preferentially affects the paternal genome Young-Lim Lee,Aniek Bouwman,Chad Harland,Mirte Bosse,Gabriel Costa Monteiro Moreiraet al. Genome Research, 2023, 33 (9), pp.1455-1464. ⟨10.1101/gr.277884.123⟩ Article dans une revue hal-04562823v1
Effect of dietary soybean oil inclusion on liver-related transcription factors in a pig model for metabolic diseases Simara Larissa Fanalli,Bruna Pereira Martins da Silva,Julia Dezen Gomes,Fernanda Nery Ciconello,Vivian Vezzoni de Almeidaet al. Scientific Reports, 2022, 12 (1), pp.10318. ⟨10.1038/s41598-022-14069-1⟩ Article dans une revue hal-04563225v1
Integrative Analysis Between Genome-Wide Association Study and Expression Quantitative Trait Loci Reveals Bovine Muscle Gene Expression Regulatory Polymorphisms Associated With Intramuscular Fat and Backfat Thickness Bárbara Silva-Vignato,Aline Silva Mello Cesar,Juliana Afonso,Gabriel Costa Monteiro Moreira,Mirele Daiana Poletiet al. Frontiers in Genetics, 2022, 13, ⟨10.3389/fgene.2022.935238⟩ Article dans une revue hal-04563215v1
Benchmarking phasing software with a whole-genome sequenced cattle pedigree Claire Oget-Ebrad,Naveen Kumar Kadri,Gabriel Costa Monteiro Moreira,Latifa Karim,Wouter Coppieterset al. BMC Genomics, 2022, 23 (1), pp.130. ⟨10.1186/s12864-022-08354-6⟩ Article dans une revue hal-04563226v1
Differential Gene Expression Associated with Soybean Oil Level in the Diet of Pigs Simara Larissa Fanalli,Bruna Pereira Martins da Silva,Julia Dezen Gomes,Vivian Vezzoni de Almeida,Felipe André Oliveira Freitaset al. Animals, 2022, 12 (13), pp.1632. ⟨10.3390/ani12131632⟩ Article dans une revue hal-04563220v1
Genome-wide detection of CNVs and their association with performance traits in broilers Anna Carolina Fernandes,Vinicius Henrique da Silva,Carolina Purcell Goes,Gabriel Costa Monteiro Moreira,Thaís Fernanda Godoyet al. BMC Genomics, 2021, 22 (1), pp.354. ⟨10.1186/s12864-021-07676-1⟩ Article dans une revue hal-04563259v1
A 12 kb multi-allelic copy number variation encompassing a GC gene enhancer is associated with mastitis resistance in dairy cattle Young-Lim Lee,Haruko Takeda,Gabriel Costa Monteiro Moreira,Latifa Karim,Erik Mullaartet al. PLoS Genetics, 2021, 17 (7), pp.e1009331. ⟨10.1371/journal.pgen.1009331⟩ Article dans une revue hal-04563252v1
Exploring the genetic architecture of feed efficiency traits in chickens Jorge Augusto Petroli Marchesi,Rafael Keith Ono,Maurício Egídio Cantão,Adriana Mércia Guaratini Ibelli,Jane de Oliveira Peixotoet al. Scientific Reports, 2021, 11 (1), pp.4622. ⟨10.1038/s41598-021-84125-9⟩ Article dans une revue hal-04563268v1
A Missense Mutation in the MYBPH Gene Is Associated With Abdominal Fat Traits in Meat-Type Chickens Priscila Anchieta Trevisoli,Gabriel Costa Monteiro Moreira,Clarissa Boschiero,Aline Silva Mello Cesar,Juliana Petriniet al. Frontiers in Genetics, 2021, 12, ⟨10.3389/fgene.2021.698163⟩ Article dans une revue hal-04563247v1
SAP30 Gene Is a Probable Regulator of Muscle Hypertrophy in Chickens Bruna Petry,Gabriel Costa Monteiro Moreira,Aline Gonçalves Lio Copola,Marcela Maria De Souza,Fernanda Cristina da Veigaet al. Frontiers in Genetics, 2021, 12, ⟨10.3389/fgene.2021.709937⟩ Article dans une revue hal-04563238v1
Genome-wide association scan for QTL and their positional candidate genes associated with internal organ traits in chickens Gabriel Costa Monteiro Moreira,Mayara Salvian,Clarissa Boschiero,Aline Silva Mello Cesar,James Reecyet al. BMC Genomics, 2019, 20 (1), pp.669. ⟨10.1186/s12864-019-6040-3⟩ Article dans une revue hal-04563288v1
Identification of selection signatures involved in performance traits in a paternal broiler line Octávio Augusto Costa Almeida,Gabriel Costa Monteiro Moreira,Fernanda Marcondes Rezende,Clarissa Boschiero,Jane de Oliveira Peixotoet al. BMC Genomics, 2019, 20 (1), pp.449. ⟨10.1186/s12864-019-5811-1⟩ Article dans une revue hal-04563294v1
MiRNAs differentially expressed in skeletal muscle of animals with divergent estimated breeding values for beef tenderness Berna Kappeler,Luciana Regitano,Mirele Poleti,Aline Cesar,Gabriel Costa Monteiro Moreiraet al. BMC Molecular Biology, 2019, 20 (1), pp.1. ⟨10.1186/s12867-018-0118-3⟩ Article dans une revue hal-04563279v1
Unraveling genomic associations with feed efficiency and body weight traits in chickens through an integrative approach Gabriel Costa Monteiro Moreira,Mirele Daiana Poleti,Fábio Pértille,Clarissa Boschiero,Aline Silva Mello Cesaret al. BMC Genetics, 2019, 20 (1), pp.83. ⟨10.1186/s12863-019-0783-3⟩ Article dans une revue hal-04563276v1
60 Re-ranking of estimated breeding values using different panel densities with ssGBLUP in broiler chickens Mayara Salvian,Gerson Barreto Mourão,Gabriel Costa Monteiro Moreira,Mônica Corrêa Ledur,Luiz Lehmann Coutinhoet al. Journal of Animal Science, 2019, 97 (Supplement_2), pp.36-37. ⟨10.1093/jas/skz122.067⟩ Article dans une revue hal-04563290v1
A genome-wide association study reveals novel genomic regions and positional candidate genes for fat deposition in broiler chickens Gabriel Costa Monteiro Moreira,Clarissa Boschiero,Aline Silva Mello Cesar,James Reecy,Thaís Fernanda Godoyet al. BMC Genomics, 2018, 19 (1), pp.374. ⟨10.1186/s12864-018-4779-6⟩ Article dans une revue hal-04563326v1
Integration of genome wide association studies and whole genome sequencing provides novel insights into fat deposition in chicken Gabriel Costa Monteiro Moreira,Clarissa Boschiero,Aline Silva Mello Cesar,James Reecy,Thaís Fernanda Godoyet al. Scientific Reports, 2018, 8 (1), pp. 6222. ⟨10.1038/s41598-018-34364-0⟩ Article dans une revue hal-04563295v1
Carcass and commercial cut yield of Santa Ines sheep affected by polymorphisms of the LEP gene Ariana Nascimento Meira,Gabriel Costa Monteiro Moreira,Luiz Lehmann Coutinho,Gerson Barreto Mourão,Hymerson Costa Azevedoet al. Small Ruminant Research, 2018, 166, pp.121-128. ⟨10.1016/j.smallrumres.2018.06.012⟩ Article dans une revue hal-04563311v1
Gene Co-expression Analysis Indicates Potential Pathways and Regulators of Beef Tenderness in Nellore Cattle Tássia Mangetti Gonçalves,Luciana Correia de Almeida Regitano,James Koltes,Aline Silva Mello Cesar,Sónia Cristina da Silva Andradeet al. Frontiers in Genetics, 2018, 9, ⟨10.3389/fgene.2018.00441⟩ Article dans une revue hal-04563298v1
Genome-wide characterization of genetic variants and putative regions under selection in meat and egg-type chicken lines Clarissa Boschiero,Gabriel Costa Monteiro Moreira,Almas Ara Gheyas,Thaís Fernanda Godoy,Gustavo Gasparinet al. BMC Genomics, 2018, 19 (1), pp.83. ⟨10.1186/s12864-018-4444-0⟩ Article dans une revue hal-04563333v1
Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits Aline Cesar,Luciana Regitano,James Reecy,Mirele Poleti,Priscila Oliveiraet al. BMC Genomics, 2018, 19 (1), pp.499. ⟨10.1186/s12864-018-4871-y⟩ Article dans une revue hal-04563303v1
Genome-wide association study for performance traits in chickens using genotype by sequencing approach Fábio Pértille,Gabriel Costa Monteiro Moreira,Ricardo Zanella,José de Ribamar da Silva Nunes,Clarissa Boschieroet al. Scientific Reports, 2017, 7 (1), pp.41748. ⟨10.1038/srep41748⟩ Article dans une revue hal-04563335v1
SNP and INDEL detection in a QTL region on chicken chromosome 2 associated with muscle deposition T. Godoy,Gabriel Costa Monteiro Moreira,C. Boschiero,A. Gheyas,G. Gasparinet al. Animal Genetics, 2015, 46 (2), pp.158-163. ⟨10.1111/age.12271⟩ Article dans une revue istex hal-04563341v1
Variant discovery in a QTL region on chromosome 3 associated with fatness in chickens Gabriel Costa Monteiro Moreira,T. Godoy,C. Boschiero,A. Gheyas,G. Gasparinet al. Animal Genetics, 2015, 46 (2), pp.141-147. ⟨10.1111/age.12263⟩ Article dans une revue istex hal-04563343v1

Communication dans un congrès (9)

Harnessing RUMIGEN EpiChip data to predict dairy cow performance M.P. Sanchez,Florian Besnard,Valentin Costes,Corentin Fouéré,Clotilde Patryet al. 76th Annual Meeting of the European Federation of Animal Science, EAAP, Aug 2025, Innsbrück, Austria Communication dans un congrès hal-05238688v1
Empowering Bioinformatics Communities with nf-core: The success of an open-source bioinformatics ecosystem Björn E Langer,Andreia Amaral,Marie-Odile Baudement,Franziska Bonath,Mathieu Charleset al. Intelligent Systems for Molecular Biology/European Conference on Computational Biology, Jul 2025, Liverpool, United Kingdom Communication dans un congrès hal-05131891v1
Round Table: The functional genome for future Genotype-to-Phenotype research and applications in swine and poultry. Gabriel Costa Monteiro Moreira GENE-SWitCH Final Conference, Nov 2023, Brussel, Belgium Communication dans un congrès hal-04831316v1
Newly annotated genomic features for biology-driven genome selection: the BovReg contribution Gabriel Costa Monteiro Moreira,Lijing Tang,Sébastien Dupont,Meenu Bhati,Hubert Pauschet al. 74th EAAP Conference, Aug 2023, Lyon, France Communication dans un congrès hal-04831275v1
Exploring tissue-specificity in the regulatory landscape of bovine genome Gabriel Costa Monteiro Moreira,Can Yuan,Sébastien Dupont,Lijing Tang,Young-Lim Leeet al. International Society of Animal Genetics (ISAG) 2023, Jul 2023, Cape town, South Africa Communication dans un congrès hal-04831307v1
Toward a high-resolution functional annotation of the cattle genome using novel breeds/crosses Gabriel Costa Monteiro Moreira,Sébastien Dupont,Doreen Becker,Mazdak Salavati,Richard Clarket al. FAANG Workshop, Feb 2022, Online, Belgium Communication dans un congrès hal-04831339v1
389. Sequence-based multi-trait genome-wide association study for linear classification traits in Belgian Blue beef cattle J.L. Gualdron Duarte,A.S. Gori,Gabriel Costa Monteiro Moreira,M. Georges,C. Charlieret al. World Congress on Genetics Applied to Livestock Production, Jul 2022, Rotterdam, Netherlands. pp.1622-1625, ⟨10.3920/978-90-8686-940-4_389⟩ Communication dans un congrès hal-04831228v1
BovReg: a high-resolution functional annotation of the cattle genome using novel breeds/crosses Gabriel Costa Monteiro Moreira,Sébastien Dupont,Doreen Becker,Mazdak Salavati,Richard Clarket al. International Society of Animal Genetics (ISAG) 2021, Jul 2021, Online, Belgium Communication dans un congrès hal-04831351v1
Live (epi)genomic battle between unfixed transposable elements and their cognate piRNA clusters in cattle testes Gabriel Costa Monteiro Moreira,Lijing Tang,Sébastien Dupont,Young-Lim Lee,Chad Harlandet al. The Biology of Genomes CHSL meeting, May 2021, Online, France Communication dans un congrès hal-04831369v1

Poster de conférence (4)

Neuroepigenetic programming by the maternal environment: Independent contribution of methylation and hydroxymethylation in the offspring's olfactory bulb following preconceptional weight loss in mice Karine Badonnel,Aurélie Chaulot-Talmon,Valentin Costes,Anne Aubert-Frambourg,Gabriel Costa Monteiro Moreiraet al. SfDohad, Dec 2025, Lille, France Poster de conférence hal-05417624v1
A subset of unfixed bovine endogenous retroviruses perturb gene expression in cis Lijing Tang,Sébastien Dupont,Wouter Coppieters,Michel Georges,Carole Charlieret al. 2022 Cold Spring Harbor meeting: Transposable Elements, Oct 2022, New york, United States Poster de conférence hal-04831409v1
Benchmarking Phasing Software With Whole-Genome Sequenced Cattle Trios Claire Oget-Ebrad,Naveen Kumar Kadri,Gabriel Costa Monteiro Moreira,Latifa Karim,Wouter Coppieterset al. 72nd Annual Meeting of the European Federation of Animal Science, Aug 2021, Davos (Suisse), Switzerland Poster de conférence hal-04831261v1
BIRTH OF POLYMORPHIC PIRNA CLUSTERS DRIVEN BY TRANSPOSABLE ELEMENT INSERTIONS IN THE MALE CATTLE GERMLINE Gabriel Costa Monteiro Moreira,Lijing Tang,Sebastien Dupont,Chad Harland,Latifa Karimet al. 2020 Cold Spring Harbor meeting: Transposable Elements (Virtual), Oct 2020, Online, Belgium Poster de conférence hal-04831392v1

Chapitre d'ouvrage (1)

ERA DA EDIÇÃO GÊNICA: APLICAÇÕES E FUTURO Bruna Petry,Gabriel Costa Monteiro Moreira CIÊNCIAS AMBIENTAIS E DA SAÚDE NA ATUALIDADE: Insights para alcançar os Objetivos para o Desenvolvimento Sustentável, 1, Instituto de Inteligência em Pesquisa e Consultoria Cientifica Ltda, pp.33-42, 2022, ⟨10.56041/9786599841804-2⟩ Chapitre d'ouvrage hal-04563364v1

Autre publication scientifique (1)

Selection of total-RNAseq reads for circRNA characterization in cattle Annie Robic,Frieder Hadlich,Gabriel Costa Monteiro Moreira,Emily Louise Clark,Graham Plastowet al. 2024, ⟨10.57745/IUJ40P⟩ Autre publication scientifique hal-04671286v1

Pré-publication, Document de travail (3)

Heat Stress Induces Locus-Specific DNA Hypomethylation Linked to Immune Regulation in Lactating Holstein Cows Gabriel Costa Monteiro Moreira,Alexis Ruiz González,Mélodie Joigner,Valentin Costes,Aurélie Chaulot-Talmonet al. 2026 Pré-publication, Document de travail (preprint/prepublication) hal-05574272v1
Polyadenylated RNA sequencing analysis helps establish a reliable catalog of circular RNAs - a bovine example. Annie Robic,Hadlich Hadlich,Gabriel Costa Monteiro Moreira,Emily Louise Clark,Graham Plastowet al. 2024 Pré-publication, Document de travail hal-04563807v1
Empowering bioinformatics communities with Nextflow and nf-core Björn E Langer,Andreia Amaral,Marie-Odile Baudement,Franziska Bonath,Mathieu Charleset al. 2024 Pré-publication, Document de travail hal-04770333v1

Thèse (1)

Genome-wide association studies reveal genomic regions and positional candidate genes for fat deposition in chickens Gabriel Costa Monteiro Moreira Life Sciences [q-bio]. USP (Universidade de São Paulo), 2018. English. ⟨NNT : ⟩ Thèse tel-04831429v1