Guillaume Beslon
Publications
Publications
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Aevol 4b: Bridging the gap between artificial life and bioinformaticsALIFE 2024 - International Conference for Artificial Life, Jul 2024, Copenhague, Denmark. pp.41-49, ⟨10.1162/isal_a_00716⟩ |
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Classifying the Post-duplication Fate of Paralogous GenesRECOMB-CG 2023 - 20th conference on Comparative Genomics, Apr 2023, Istanbul, Turkey. pp.1-18, ⟨10.1007/978-3-031-36911-7_1⟩ |
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Simulating short-and long-term evolutionary dynamics on rugged landscapesALIFE 2021 - Conference on Artificial Life, Jul 2021, Prague, Czech Republic. pp.1-9 |
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The Complexity RatchetCCS 2021 - International Conference on Complex Systems, Oct 2021, Lyon, France |
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A Genome-Wide Evolutionary Simulation of the Transcription-Supercoiling CouplingALIFE 2021 - Conference on Artificial Life, Jul 2021, Prague, Czech Republic |
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How to reduce a genome? ALife as a tool to teach the scientific method to school pupilsALIFE 2019 - Conference on Artificial Life, Jul 2019, Newcastle, United Kingdom. pp.497-504, ⟨10.1162/isal_a_00211⟩ |
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Weight-based search to find clusters around medians in subspacesSAC 2018 - ACM Symposium On Applied Computing, Apr 2018, Pau, France. pp.1-10 |
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The Complexity Ratchet: Stronger than selection, weaker than robustnessALIFE 2018 - the 2018 conference on artificial Life, Jul 2018, Tokyo, Japan. pp.1-8, ⟨10.1162/isal_a_00051⟩ |
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Evolving Living Technologies-Insights from the EvoEvo projectSSBSE 2018 - 10th Symposium on Search-Based Software Engineering, Sep 2018, Montpellier, France. pp.46-62, ⟨10.1007/978-3-319-99241-9_2⟩ |
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Environmental seasonality drives digital populations towards stable cross-feedingEuropean Conference on Artificial Life (ECAL), Sep 2017, Villeurbanne, France |
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A 4-base model for the Aevol in-silico experimental evolution platformEuropean Conference on Artificial Life, Sep 2017, Villeurbanne, France |
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EvoMove: Evolutionary-based living musical companionEuropean Conference on Artificial Life (ECAL), Sep 2017, Villeurbanne, France. pp.1-8 |
A Commensal Architecture for Evolving Living InstrumentsConference on Computer Simulation of Musical Creativity, Jun 2016, Huddersfield, United Kingdom. pp.1-8 |
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Open-Endedness: Definitions and Shortcuts2nd EvoEvo Workshop, satellite workshop of CCS2016, Sep 2016, Amsterdam, Netherlands |
Comparative Genomics on Artificial LifeComputability in Europe, Jun 2016, Paris, France. pp.35-44 |
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In silico experimental evolution provides independent and challenging benchmarks for comparative genomicsJournées ouvertes Biologie Informatique Mathématiques, Jun 2016, Lyon, France. pp.79-82 |
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In Silico Experimental Evolution suggests a complex intertwining of selection, robustness and drift in the evolution of genetic networks complexityArtificial Life, Jul 2016, Cancun, Mexico |
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Evolvability drives innovation in viral genomes2nd EvoEvo Workshop, satellite workshop of CCS2016, Sep 2016, Amsterdam, France |
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Evolution of mutator populations in constant environments2nd EvoEvo Workshop, satellite workshop of CCS2016, Sep 2016, Amsterdam, Netherlands |
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Aevol-4b: Toward a new simulation platform to benchmark phylogenetic toolsALPHY (ALignments and PHYlogeny), Feb 2017, Villeurbanne, France |
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In Silico Experimental Evolution Highlights the Influence of Environmental Seasonality on Bacterial Diversification2nd EvoEvo Workshop, satellite workshop of CCS2016, Sep 2016, Amsterdam, Netherlands |
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Towards a Integrated Evolutionary Model to Study Evolution of EvolutionEvoEvo Workshop (Satellite workshop of ECAL 2015), Jul 2015, York, United Kingdom |
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Subspace Clustering for all SeasonsEvoEvo Workshop (satellite workshop of ECAL 2015), Jul 2015, york, United Kingdom. pp.1-3 |
Subspace Clustering Using Evolvable Genome StructureGenetic and Evolutionary Computation Conference (GECCO), Jul 2015, Madrid, Spain. pp.575-582 |
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Epigenetic inheritance speeds up evolution of artificial organismsEuropean Conference on Artificial Life, Jul 2015, York, United Kingdom. ⟨10.7551/978-0-262-33027-5-ch078⟩ |
In silico experimental evolution: a tool to test evolutionary scenarios11th RECOMB - Comparative Genomics 2013, Oct 2013, Villeurbane, France |
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An alife game to teach evolution of antibiotic resistanceECAL - 12th European Conference on Artificial Life - 2013, Sep 2013, Taormina, Italy. pp.43-50 |
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The Paradoxical Effects of Allelic Recombination on FitnessProceedings of Artificial Life XIII, Jul 2012, East Lansing, France. pp.536--537 |
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Parsimonious modeling of scaling laws in genomes and transcriptomesProceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems (ECAL 11), Aug 2011, Paris, France. pp.414--415 |
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Homologous and Nonhomologous Rearrangements: Interactions and Effects on Evolvability.Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems (ECAL 11), Aug 2011, Paris, France. pp.622--629 |
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Aevol : un modèle individu-centré pour l’étude de la structuration des génomesMajecSTIC, Oct 2010, Bordeaux, France |
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Importance of the rearrangement rates on the organization of transcription.Proceedings of Artificial Life XII, Aug 2010, Odense, Denmark. pp.479--486 |
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Influence of the rearrangement rates on the organization of genome transcriptionJOBIM, Jun 2010, Montpellier, France |
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Influence of the rearrangement rates on the organization of genome transcriptionIntegrative Post-Genomics, Nov 2010, Lyon, France |
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Scaling Laws in Digital OrganismsProc. Information Processing in Cells and Tissues IPCAT'09, Apr 2009, Ascona, Switzerland. pp.111-114 |
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Evolution of scaling laws in artificial regulation networksIntegrative Post-Genomics, Nov 2009, Lyon, France. pp.22-22 |
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Hyperstructures 2008-2009modelling complex biological systems, 2009, Evry, France |
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Evolution des organismes bactériensJournée INSA de Lyon "BioIngénierie / Sciences et Ingénierie du Vivant", Jul 2008, Villeurbanne, France. 12 diapos |
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Modeling evolution of genetic regulation in artificial bacteriaEuropean Conference on Complex Systems, Sep 2008, Jérusalem, Israel. pp.4 |
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The topology of the protein network influences the dynamics of gene order: From systems biology to a systemic understanding of evolution8. European Conference on Artificial Life, Sep 2005, Canterbury,, United Kingdom. ⟨10.1162/artl.2008.14.1.149⟩ |
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From bioputing to bactoputing: computing with bacteriaLille Spring School on Modelling Complex Biological Systems in the Context of Genomics, Apr 2008, Paris, France. pp.123-150 |
Les réseaux métaboliques et génétiquesJournée INSA de Lyon "BioIngénierie / Sciences et Ingénierie du Vivant", 2008, Villeurbanne (France), juillet 2008, France. pp.1-1 |
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Petits bricolages en évolution"Génies de la Bricole et du Bricolage", colloque en hommage à Claude Levy-Strauss, Nov 2008, Lyon, France |
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Optimisation incrémentale de réseaux de neurones RBF pour la régression via un algorithme évolutionnaire : RBF-GeneActes 8° Journées Francophones Extraction et Gestion des Connaissances EGC'08, Jan 2008, Sophia-Antipolis, France. pp.331-336 |
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Evolution des organismes bactériensJournée INSA de Lyon "BioIngénierie / Sciences et Ingénierie du Vivant", 2008, Villeurbanne (France), juillet 2008, France. pp.1-1 |
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Evolution of genome structure : a computational approachWorkshop “Evolutionary Dynamics” , Mar 2008, Utrecht, Netherlands |
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RAevol, un modèle de génétique digitale des réseaux de régulationRéseaux d'Interactions : Analyse, Modélisation, Simulation, RIAMS 2007, Nov 2007, Lyon, France |
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Digital Genetics: Modéliser la dynamique évolutive des génomesJournées communes des clusters environnement et informatique à l'INRIA Montbonnot, Nov 2007, Grenoble, France |
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Modeling evolution of Regulatory Networks in Artificial Organisms3rd International Symposium on Computational Life Science CompLife'07, Oct 2007, Utrecht, Netherlands. pp.87-98, ⟨10.1063/1.2793407⟩ |
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Effect of bottlenecks on genome size: investigations by digital geneticsIntegrative Post-Genomics, Nov 2007, Lyon, France |
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Artificial Regulatory Networks EvolutionProc 1st Int Workshop on Machine Learning for Systems Biology MLSB 07, Sep 2007, Evry, France. pp.47-52 |
Systems Biology, where is the network ?Santa-Fe Institute, Jul 2007, Santa-Fe, United States |
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Generating Data form the Evolution of Artificial Regulatory NetworksWorkshop Data Mining in Functional Genomics and Proteomics. Current Trends and Future Directions co-located with ECML/PKDD 07, Sep 2007, Varsovie, Poland. pp.91-103 |
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Evolution de Second Ordre : le hasard sélectionné.Spring school on interdisciplinarity in biology "Hasard et Fluctuations en Biologie", May 2007, Berder, France |
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Long-term needs for evolvability and robustness shape genome structure: a simulation studyJournées Ouvertes Biologie Informatique Mathématiques (JOBIM), 2006, Bordeaux (France), 2006, France. pp.1-1 |
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Multi-Agent Modeling of Nuclear Structures.Spring workshop on biological systems modeling, Mar 2006, Bombannes, France |
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Evolution et Robustesse : un équilibre complexe aux conséquences inattendues.Journées de Gerland "Systèmes complexes et biologie", Dec 2006, Lyon, France |
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Amount of non-coding sequences depends on mutation rate10th Evolutionary Biology Meeting, 2006, Marseille (France), 2006, France. pp.1-1 |
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Designing artificial organisms to study the influence of gene pleitropy on genome evolution8th European Conference on Artificial Life (ECAL 2005), 2005, Canterbury (Royaume-Uni), 2005, France. pp.1-1 |
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Evolutionary influence of the protein network topology on gene organisation in artificial organismsEuropean Conference on Complex System (ECCS 2005), 2005, Paris (France), 2005, France. pp.1-1 |
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Modelling evolution of prokaryotic genomes: an integrative approachFEBS Advanced Lecture Course, System Biology: From Molecules and Modeling to Cells, 2005, Gosau (Autriche), 2005, France. pp.1-1 |
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2DS'PI 2 Dimensional Dynamic Simulation of Proteins' InteractionsJournées de post-génomique de la DOUA 2002, JPG'02, Jun 2002, Lyon, France |
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ROSO: A software to search optimized oligonucleotide probes for microarraysCOST853: Agricultural Biomarkers for Array-Technology, Sep 2002, Waedenswill, Switzerland |
Towards alife-generated benchmarks for phylogenyALignements and PHYlogénie (Alphy), Jan 2023, Grenoble, France. |
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Phenotypic Noise and the Cost of ComplexityEvoLyon 2019, Nov 2019, Lyon, France |
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The complexity ratchet: stronger than selectionBeacon congress 2018, Aug 2018, east-lansing, United States. pp.1 |
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Jump then Climb: can rearrangements predict the occurrence of mutational bursts?Evolution 2018 - Congress on Evolutionary Biology, Aug 2018, Montpellier, France. pp.1 |
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In silico experimental evolution shows that complexity can rise even in simple environmentsICSB 2018 - 19th International Conference on Systems Biology, Oct 2018, Lyon, France. pp.1 |
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Testing evolution predictability using the aevol software16th international meeting of the European Society of Evolutionary Biology (ESEB 2017) , Aug 2017, Groningen, Netherlands. 2017 |
Unexpected genome inflation and streamlining in variable environmentsJournées ouvertes de Biologie Informatique & Mathématiques 2016, Jun 2016, Lyon, France. pp.320-322, 2016 |
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Simulating evolutionary scenarios to test whether they can induce reductive evolutionSMBE 2012 : Society for Molecular Biology and Evolution, Jun 2012, Dublin, Ireland |
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Optimization of proton therapy ballistics using a genetic algorithmParticle Therapy Co-Operative Group, PTCOG, May 2011, Philadelphia (US), United States. 2011 |
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Chromatin is a major player in regulating gene expression stochasticity in higher eukaryotic cellsStochastic Systems Biology conference, Jul 2011, Ascona, Switzerland. 2011 |
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Relationship between chromosomal features and gene expression stochasticity in higher eukaryotic cellsIntegrative Post-Genomics, Nov 2009, Lyon, France. pp.36-36, 2009 |
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Gene expression and the dynamics of transcriptional regulation : a model for theoretical and experimental investigationsIntegrative Post-Genomics, IPG'08, Nov 2008, Lyon, France. 2008 |
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Modeling membrane micro-domain formation through inhomogeneous diffusionIntegrative Post-Genomics, IPG'08, Nov 2008, Lyon, France. 2008 |
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Binding cooperation and competition among transcription factors can cause complex stochastic properties in gene expressionIntegrative Post-Genomics, IPG'07, Nov 2007, Lyon, France. 2007 |
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ROSO: a software to search optimized oligonucleotide probes for microarrays14. Rencontres Régionales de la Recherche, Oct 2003, Saint-Etienne, France |
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Bioinformatique du transcriptome de Buchnera, symbiote intracellulaire des puceronsRencontres 2003 des Microbiologistes de l'INRA, May 2003, Dourdan, France |
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Modeling evolution through a genetic regulation networkJournées de Post-Génomique de la Doua - JPGD'02, Mar 2002, Villeurbanne, France |
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ROSO : un logiciel de recherche et d'optimisation des sondes oligonucléotidiques destinées aux puces à ADNJournées Ouvertes Biologie Informatique Mathématiques (JOBIM), Jun 2002, Saint-Malo, France |
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ROSO : un logiciel de recherche et d'optimisation des sondes oligonucléotidiques destinées aux puces à ADNIntersciences 2002, Colloque des doctorants scientifiques de Lyon, Apr 2002, Villeurbanne, France |
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ROSO : A Software to Search Optimized Oligonucleotide Probes for Microarrays10. International Conference on Intelligent Systems for Molecular Biology (ISMB), Aug 2002, Edmonton, Canada |
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ROSO : un logiciel de recherche et d'optimisation des sondes oligonucléotidiquesJournées de Post-Génomique de la Doua - JPGD'02, Mar 2002, Villeurbanne, France |
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Functional space approach for evolutionary algorithmsJournées de Post-Génomique de la Doua - JPGD'02, Mar 2002, Villeurbanne, France |
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Développement d'un logiciel d'optimisation de sondes oligonucléotidiques destinées aux puces à ADNJournées de Post-Génomique de la Doua - JPGD'01, Apr 2001, villeurbanne, France |
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Of Evolution, Systems and ComplexityEvolutionary Systems Biology II, 2021, ⟨10.1007/978-3-030-71737-7_1⟩ |
De la modélisation comme poésie. La modélisation de systèmes biologiques complexes vue par deux modélisateursFranck Varenne and Marc Silberstein. Modéliser & simuler. Epistémologies et pratiques de la modélisation et de la simulation, 1, Editions Matériologiques, Paris, 2013, 978-2-919694-19-8 |
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Mécanismes moléculaires et fonction biologique de la variabilité de l'expression génique à l'échelle de la cellule unique : une approche systémiqueLe Hasard au coeur de la cellule, Syllepse edition, pp.82-111, 2009, ⟨10.3917/edmat.kupie.2011.01.0082⟩ |
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Designing artificial organisms to study the influence of gene pleitropy on genome evolutionProceedings of the System Biology Workshop at the 8th European Conference on Artificial Life (ECAL 2005), XXX, pp.1-1, 2005 |
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Evolutionary escape from local fitness peaks through inversion mutations2021, pp.1-1 |
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French Roadmap for complex Systems 2008-20092009 |
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EvoEvo Deliverable 1.5[Research Report] INRIA Grenoble - Rhône-Alpes. 2016 |
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EvoEvo Deliverable 5.2[Research Report] INRIA Grenoble - Rhône-Alpes. 2016 |
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EvoEvo Deliverable 6.6[Research Report] INRIA Grenoble - Rhône-Alpes. 2016 |
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EvoEvo Deliverable 3.4[Research Report] INRIA Grenoble - Rhône-Alpes. 2016 |
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EvoEvo Deliverable 1.2[Research Report] INRIA Grenoble - Rhône-Alpes. 2016 |
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EvoEvo Deliverable 1.4[Research Report] INRIA Grenoble - Rhône-Alpes. 2016 |
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EvoEvo Deliverable 1.6[Research Report] INRIA Grenoble - Rhône-Alpes. 2016 |
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EvoEvo Deliverable 3.3[Research Report] INRIA Grenoble - Rhône-Alpes. 2016 |
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EvoEvo Deliverable 3.2[Research Report] INRIA Grenoble - Rhône-Alpes. 2016 |
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EvoEvo Deliverable 6.8[Research Report] INRIA Grenoble - Rhône-Alpes. 2016 |
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EvoEvo Deliverable 5.1[Research Report] INRIA Grenoble - Rhône-Alpes. 2016 |
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EvoEvo Deliverable 1.3[Research Report] INRIA Grenoble - Rhône-Alpes. 2016 |
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EvoEvo Deliverable 3.1[Research Report] INRIA Grenoble - Rhône-Alpes. 2016 |
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EvoEvo Deliverable 4.3[Research Report] INRIA Grenoble - Rhône-Alpes. 2016 |
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EvoEvo Deliverable 6.5[Research Report] INRIA Grenoble - Rhône-Alpes. 2015 |
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EvoEvo Deliverable 2.2[Research Report] INRIA Grenoble - Rhône-Alpes. 2015 |
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EvoEvo Deliverable 2.7[Research Report] INRIA Grenoble - Rhône-Alpes. 2015 |
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EvoEvo Deliverable 2.8[Research Report] INRIA Grenoble - Rhône-Alpes. 2015 |
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EvoEvo Deliverable 2.4[Research Report] INRIA Grenoble - Rhône-Alpes. 2015 |
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EvoEvo Deliverable 2.6[Research Report] INRIA Grenoble - Rhône-Alpes. 2015 |
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EvoEvo Deliverable 2.3[Research Report] INRIA Grenoble - Rhône-Alpes. 2014 |
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EvoEvo Deliverable 2.5[Research Report] INRIA Grenoble - Rhône-Alpes. 2014 |
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EvoEvo Deliverable 1.1[Research Report] INRIA Grenoble - Rhone-Alpes. 2014 |
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EvoEvo Deliverable 2.1[Research Report] INRIA Grenoble - Rhône-Alpes. 2014 |
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EvoEvo Deliverable 6.1[Research Report] INRIA Grenoble - Rhône-Alpes. 2014 |
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EvoEvo Deliverable 6.2[Research Report] INRIA Grenoble - Rhône-Alpes. 2014 |