Guillaume Beslon
152
Documents
Publications
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Simulating short-and long-term evolutionary dynamics on rugged landscapesALIFE 2021 - Conference on Artificial Life, Jul 2021, Prague, Czech Republic. pp.1-9
Conference papers
hal-03426019v1
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The Complexity RatchetCCS 2021 - International Conference on Complex Systems, Oct 2021, Lyon, France
Conference papers
hal-03511442v1
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A Genome-Wide Evolutionary Simulation of the Transcription-Supercoiling CouplingALIFE 2021 - Conference on Artificial Life, Jul 2021, Prague, Czech Republic
Conference papers
hal-03242696v2
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How to reduce a genome? ALife as a tool to teach the scientific method to school pupilsALIFE 2019 - Conference on Artificial Life, Jul 2019, Newcastle, United Kingdom. pp.497-504, ⟨10.1162/isal_a_00211⟩
Conference papers
hal-02285718v1
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Evolving Living Technologies-Insights from the EvoEvo projectSSBSE 2018 - 10th Symposium on Search-Based Software Engineering, Sep 2018, Montpellier, France. pp.46-62, ⟨10.1007/978-3-319-99241-9_2⟩
Conference papers
hal-01882636v1
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The Complexity Ratchet: Stronger than selection, weaker than robustnessALIFE 2018 - the 2018 conference on artificial Life, Jul 2018, Tokyo, Japan. pp.1-8, ⟨10.1162/isal_a_00051⟩
Conference papers
hal-01882628v1
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Weight-based search to find clusters around medians in subspacesSAC 2018 - ACM Symposium On Applied Computing, Apr 2018, Pau, France. pp.1-10
Conference papers
hal-01869974v1
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A 4-base model for the Aevol in-silico experimental evolution platformEuropean Conference on Artificial Life, Sep 2017, Villeurbanne, France
Conference papers
hal-01569097v1
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Aevol-4b: Toward a new simulation platform to benchmark phylogenetic toolsALPHY (ALignments and PHYlogeny), Feb 2017, Villeurbanne, France
Conference papers
hal-01569078v1
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Environmental seasonality drives digital populations towards stable cross-feedingEuropean Conference on Artificial Life (ECAL), Sep 2017, Villeurbanne, France
Conference papers
hal-01569093v1
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EvoMove: Evolutionary-based living musical companionEuropean Conference on Artificial Life (ECAL), Sep 2017, Villeurbanne, France. pp.1-8
Conference papers
hal-01569091v2
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Comparative Genomics on Artificial LifeComputability in Europe, Jun 2016, Paris, France. pp.35-44
Conference papers
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In silico experimental evolution provides independent and challenging benchmarks for comparative genomicsJournées ouvertes Biologie Informatique Mathématiques, Jun 2016, Lyon, France. pp.79-82
Conference papers
hal-01375657v1
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In Silico Experimental Evolution suggests a complex intertwining of selection, robustness and drift in the evolution of genetic networks complexityArtificial Life, Jul 2016, Cancun, Mexico
Conference papers
hal-01375645v1
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A Commensal Architecture for Evolving Living InstrumentsConference on Computer Simulation of Musical Creativity, Jun 2016, Huddersfield, United Kingdom. pp.1-8
Conference papers
hal-01368034v1
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Open-Endedness: Definitions and Shortcuts2nd EvoEvo Workshop, satellite workshop of CCS2016, Sep 2016, Amsterdam, Netherlands
Conference papers
hal-01375671v1
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In Silico Experimental Evolution Highlights the Influence of Environmental Seasonality on Bacterial Diversification2nd EvoEvo Workshop, satellite workshop of CCS2016, Sep 2016, Amsterdam, Netherlands
Conference papers
hal-01375677v1
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Evolvability drives innovation in viral genomes2nd EvoEvo Workshop, satellite workshop of CCS2016, Sep 2016, Amsterdam, France
Conference papers
hal-01375665v1
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Evolution of mutator populations in constant environments2nd EvoEvo Workshop, satellite workshop of CCS2016, Sep 2016, Amsterdam, Netherlands
Conference papers
hal-01375669v1
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Towards a Integrated Evolutionary Model to Study Evolution of EvolutionEvoEvo Workshop (Satellite workshop of ECAL 2015), Jul 2015, York, United Kingdom
Conference papers
hal-01252796v1
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Subspace Clustering for all SeasonsEvoEvo Workshop (satellite workshop of ECAL 2015), Jul 2015, york, United Kingdom. pp.1-3
Conference papers
hal-01252793v1
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Subspace Clustering Using Evolvable Genome StructureGenetic and Evolutionary Computation Conference (GECCO), Jul 2015, Madrid, Spain. pp.575-582
Conference papers
hal-01199136v1
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Epigenetic inheritance speeds up evolution of artificial organismsEuropean Conference on Artificial Life, Jul 2015, York, United Kingdom. ⟨10.7551/978-0-262-33027-5-ch078⟩
Conference papers
hal-01248383v1
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An alife game to teach evolution of antibiotic resistanceECAL - 12th European Conference on Artificial Life - 2013, Sep 2013, Taormina, Italy. pp.43-50
Conference papers
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The Paradoxical Effects of Allelic Recombination on FitnessProceedings of Artificial Life XIII, Jul 2012, East Lansing, France. pp.536--537
Conference papers
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Homologous and Nonhomologous Rearrangements: Interactions and Effects on Evolvability.Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems (ECAL 11), Aug 2011, Paris, France. pp.622--629
Conference papers
hal-00696902v1
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Parsimonious modeling of scaling laws in genomes and transcriptomesProceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems (ECAL 11), Aug 2011, Paris, France. pp.414--415
Conference papers
hal-00696870v1
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Aevol : un modèle individu-centré pour l’étude de la structuration des génomesMajecSTIC, Oct 2010, Bordeaux, France
Conference papers
hal-01381560v1
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Influence of the rearrangement rates on the organization of genome transcriptionJOBIM, Jun 2010, Montpellier, France
Conference papers
hal-01381518v1
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Importance of the rearrangement rates on the organization of transcription.Proceedings of Artificial Life XII, Aug 2010, Odense, Denmark. pp.479--486
Conference papers
hal-00697043v1
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Influence of the rearrangement rates on the organization of genome transcriptionIntegrative Post-Genomics, Nov 2010, Lyon, France
Conference papers
hal-01381618v1
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Scaling Laws in Digital OrganismsProc. Information Processing in Cells and Tissues IPCAT'09, Apr 2009, Ascona, Switzerland. pp.111-114
Conference papers
hal-01437632v1
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Hyperstructures 2008-2009modelling complex biological systems, 2009, Evry, France
Conference papers
hal-03469577v1
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Evolution of scaling laws in artificial regulation networksIntegrative Post-Genomics, Nov 2009, Lyon, France. pp.22-22
Conference papers
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Optimisation incrémentale de réseaux de neurones RBF pour la régression via un algorithme évolutionnaire : RBF-GeneActes 8° Journées Francophones Extraction et Gestion des Connaissances EGC'08, Jan 2008, Sophia-Antipolis, France. pp.331-336
Conference papers
hal-01614293v1
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From bioputing to bactoputing: computing with bacteriaLille Spring School on Modelling Complex Biological Systems in the Context of Genomics, Apr 2008, Paris, France. pp.123-150
Conference papers
hal-00340470v1
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Petits bricolages en évolution"Génies de la Bricole et du Bricolage", colloque en hommage à Claude Levy-Strauss, Nov 2008, Lyon, France
Conference papers
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Modeling evolution of genetic regulation in artificial bacteriaEuropean Conference on Complex Systems, Sep 2008, Jérusalem, Israel. pp.4
Conference papers
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Evolution des organismes bactériensJournée INSA de Lyon "BioIngénierie / Sciences et Ingénierie du Vivant", Jul 2008, Villeurbanne, France. 12 diapos
Conference papers
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Evolution of genome structure : a computational approachWorkshop “Evolutionary Dynamics” , Mar 2008, Utrecht, Netherlands
Conference papers
hal-01615228v1
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Effect of bottlenecks on genome size: investigations by digital geneticsIntegrative Post-Genomics, Nov 2007, Lyon, France
Conference papers
hal-01596355v1
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Digital Genetics: Modéliser la dynamique évolutive des génomesJournées communes des clusters environnement et informatique à l'INRIA Montbonnot, Nov 2007, Grenoble, France
Conference papers
hal-01615201v1
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Modeling evolution of Regulatory Networks in Artificial Organisms3rd International Symposium on Computational Life Science CompLife'07, Oct 2007, Utrecht, Netherlands. pp.87-98, ⟨10.1063/1.2793407⟩
Conference papers
hal-01613768v1
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RAevol, un modèle de génétique digitale des réseaux de régulationRéseaux d'Interactions : Analyse, Modélisation, Simulation, RIAMS 2007, Nov 2007, Lyon, France
Conference papers
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Artificial Regulatory Networks EvolutionProc 1st Int Workshop on Machine Learning for Systems Biology MLSB 07, Sep 2007, Evry, France. pp.47-52
Conference papers
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Generating Data form the Evolution of Artificial Regulatory NetworksWorkshop Data Mining in Functional Genomics and Proteomics. Current Trends and Future Directions co-located with ECML/PKDD 07, Sep 2007, Varsovie, Poland. pp.91-103
Conference papers
hal-01613779v1
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Systems Biology, where is the network ?Santa-Fe Institute, Jul 2007, Santa-Fe, United States
Conference papers
hal-01615180v1
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Evolution de Second Ordre : le hasard sélectionné.Spring school on interdisciplinarity in biology "Hasard et Fluctuations en Biologie", May 2007, Berder, France
Conference papers
hal-01615166v1
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Evolution et Robustesse : un équilibre complexe aux conséquences inattendues.Journées de Gerland "Systèmes complexes et biologie", Dec 2006, Lyon, France
Conference papers
hal-01615165v1
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Multi-Agent Modeling of Nuclear Structures.Spring workshop on biological systems modeling, Mar 2006, Bombannes, France
Conference papers
hal-01615151v1
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The topology of the protein network influences the dynamics of gene order: From systems biology to a systemic understanding of evolution8. European Conference on Artificial Life, Sep 2005, Canterbury,, United Kingdom. ⟨10.1162/artl.2008.14.1.149⟩
Conference papers
hal-02823137v1
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2DS'PI 2 Dimensional Dynamic Simulation of Proteins' InteractionsJournées de post-génomique de la DOUA 2002, JPG'02, Jun 2002, Lyon, France
Conference papers
inria-00615231v1
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ROSO: A software to search optimized oligonucleotide probes for microarraysCOST853: Agricultural Biomarkers for Array-Technology, Sep 2002, Waedenswill, Switzerland
Conference papers
hal-03506465v1
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Phenotypic Noise and the Cost of ComplexityEvoLyon 2019, Nov 2019, Lyon, France
Conference poster
hal-02402443v1
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Jump then Climb: can rearrangements predict the occurrence of mutational bursts?Evolution 2018 - Congress on Evolutionary Biology, Aug 2018, Montpellier, France. pp.1
Conference poster
hal-01938800v1
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The complexity ratchet: stronger than selectionBeacon congress 2018, Aug 2018, east-lansing, United States. pp.1
Conference poster
hal-01938802v1
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In silico experimental evolution shows that complexity can rise even in simple environmentsICSB 2018 - 19th International Conference on Systems Biology, Oct 2018, Lyon, France. pp.1
Conference poster
hal-01939365v1
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Testing evolution predictability using the aevol software16th international meeting of the European Society of Evolutionary Biology (ESEB 2017) , Aug 2017, Groningen, Netherlands. 2017
Conference poster
hal-01577115v1
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Unexpected genome inflation and streamlining in variable environmentsJournées ouvertes de Biologie Informatique & Mathématiques 2016, Jun 2016, Lyon, France. pp.320-322, 2016
Conference poster
hal-01375653v1
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Simulating evolutionary scenarios to test whether they can induce reductive evolutionSMBE 2012 : Society for Molecular Biology and Evolution, Jun 2012, Dublin, Ireland
Conference poster
hal-00762597v1
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Chromatin is a major player in regulating gene expression stochasticity in higher eukaryotic cellsStochastic Systems Biology conference, Jul 2011, Ascona, Switzerland. 2011
Conference poster
hal-01354566v1
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Optimization of proton therapy ballistics using a genetic algorithmParticle Therapy Co-Operative Group, PTCOG, May 2011, Philadelphia (US), United States. 2011
Conference poster
hal-01354428v1
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Relationship between chromosomal features and gene expression stochasticity in higher eukaryotic cellsIntegrative Post-Genomics, Nov 2009, Lyon, France. pp.36-36, 2009
Conference poster
hal-01437813v1
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Modeling membrane micro-domain formation through inhomogeneous diffusionIntegrative Post-Genomics, IPG'08, Nov 2008, Lyon, France. 2008
Conference poster
hal-01614515v1
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Gene expression and the dynamics of transcriptional regulation : a model for theoretical and experimental investigationsIntegrative Post-Genomics, IPG'08, Nov 2008, Lyon, France. 2008
Conference poster
hal-01614314v1
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Binding cooperation and competition among transcription factors can cause complex stochastic properties in gene expressionIntegrative Post-Genomics, IPG'07, Nov 2007, Lyon, France. 2007
Conference poster
hal-01613869v1
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ROSO: a software to search optimized oligonucleotide probes for microarrays14. Rencontres Régionales de la Recherche, Oct 2003, Saint-Etienne, France
Conference poster
hal-03506598v1
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Bioinformatique du transcriptome de Buchnera, symbiote intracellulaire des puceronsRencontres 2003 des Microbiologistes de l'INRA, May 2003, Dourdan, France
Conference poster
hal-03506503v1
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ROSO : A Software to Search Optimized Oligonucleotide Probes for Microarrays10. International Conference on Intelligent Systems for Molecular Biology (ISMB), Aug 2002, Edmonton, Canada
Conference poster
hal-03506483v1
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ROSO : un logiciel de recherche et d'optimisation des sondes oligonucléotidiquesJournées de Post-Génomique de la Doua - JPGD'02, Mar 2002, Villeurbanne, France
Conference poster
hal-03506485v1
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ROSO : un logiciel de recherche et d'optimisation des sondes oligonucléotidiques destinées aux puces à ADNJournées Ouvertes Biologie Informatique Mathématiques (JOBIM), Jun 2002, Saint-Malo, France
Conference poster
hal-03506488v1
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Modeling evolution through a genetic regulation networkJournées de Post-Génomique de la Doua - JPGD'02, Mar 2002, Villeurbanne, France
Conference poster
hal-03506447v1
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Functional space approach for evolutionary algorithmsJournées de Post-Génomique de la Doua - JPGD'02, Mar 2002, Villeurbanne, France
Conference poster
hal-03506453v1
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ROSO : un logiciel de recherche et d'optimisation des sondes oligonucléotidiques destinées aux puces à ADNIntersciences 2002, Colloque des doctorants scientifiques de Lyon, Apr 2002, Villeurbanne, France
Conference poster
hal-03506486v1
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Développement d'un logiciel d'optimisation de sondes oligonucléotidiques destinées aux puces à ADNJournées de Post-Génomique de la Doua - JPGD'01, Apr 2001, villeurbanne, France
Conference poster
hal-03506436v1
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Of Evolution, Systems and ComplexityEvolutionary Systems Biology II, 2021, ⟨10.1007/978-3-030-71737-7_1⟩
Book sections
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De la modélisation comme poésie. La modélisation de systèmes biologiques complexes vue par deux modélisateursFranck Varenne and Marc Silberstein. Modéliser & simuler. Epistémologies et pratiques de la modélisation et de la simulation, 1, Editions Matériologiques, Paris, 2013, 978-2-919694-19-8
Book sections
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Mécanismes moléculaires et fonction biologique de la variabilité de l'expression génique à l'échelle de la cellule unique : une approche systémiqueLe Hasard au coeur de la cellule, Syllepse edition, pp.82-111, 2009, ⟨10.3917/edmat.kupie.2011.01.0082⟩
Book sections
hal-01499539v1
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Evolutionary escape from local fitness peaks through inversion mutations2021, pp.1-1
Other publications
hal-03426022v1
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French Roadmap for complex Systems 2008-20092009
Other publications
hal-00392486v1
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A Genome-Wide Evolutionary Simulation of the Transcription-Supercoiling Coupling: extended version2022
Preprints, Working Papers, ...
hal-03667822v1
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Towards the optimization of ballistics in proton therapy using genetic algorithms: implementation issues2022
Preprints, Working Papers, ...
hal-03702837v1
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Variable length genetic algorithm with continuous parameters optimization of beam layout in proton therapy2022
Preprints, Working Papers, ...
hal-03702842v1
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Apprivoiser la vie2008
Preprints, Working Papers, ...
hal-01470048v1
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Spontaneous Dynamics of Asymmetric Random Recurrent Spiking Neural Networks2004
Preprints, Working Papers, ...
hal-00003305v1
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EvoEvo Deliverable 6.8[Research Report] INRIA Grenoble - Rhône-Alpes. 2016
Reports
hal-01577187v1
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EvoEvo Deliverable 3.4[Research Report] INRIA Grenoble - Rhône-Alpes. 2016
Reports
hal-01577160v1
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EvoEvo Deliverable 1.2[Research Report] INRIA Grenoble - Rhône-Alpes. 2016
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hal-01577126v1
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EvoEvo Deliverable 1.4[Research Report] INRIA Grenoble - Rhône-Alpes. 2016
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hal-01577128v1
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EvoEvo Deliverable 5.1[Research Report] INRIA Grenoble - Rhône-Alpes. 2016
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hal-01577177v1
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EvoEvo Deliverable 5.2[Research Report] INRIA Grenoble - Rhône-Alpes. 2016
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hal-01577180v1
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EvoEvo Deliverable 6.6[Research Report] INRIA Grenoble - Rhône-Alpes. 2016
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hal-01577185v1
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EvoEvo Deliverable 1.5[Research Report] INRIA Grenoble - Rhône-Alpes. 2016
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hal-01577130v1
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EvoEvo Deliverable 1.3[Research Report] INRIA Grenoble - Rhône-Alpes. 2016
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hal-01577127v1
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EvoEvo Deliverable 4.3[Research Report] INRIA Grenoble - Rhône-Alpes. 2016
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hal-01577166v1
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EvoEvo Deliverable 3.1[Research Report] INRIA Grenoble - Rhône-Alpes. 2016
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hal-01577153v1
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EvoEvo Deliverable 1.6[Research Report] INRIA Grenoble - Rhône-Alpes. 2016
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hal-01577131v1
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EvoEvo Deliverable 3.2[Research Report] INRIA Grenoble - Rhône-Alpes. 2016
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hal-01577155v1
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EvoEvo Deliverable 3.3[Research Report] INRIA Grenoble - Rhône-Alpes. 2016
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hal-01577156v1
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EvoEvo Deliverable 2.7[Research Report] INRIA Grenoble - Rhône-Alpes. 2015
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hal-01577147v1
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EvoEvo Deliverable 2.8[Research Report] INRIA Grenoble - Rhône-Alpes. 2015
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hal-01577149v1
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EvoEvo Deliverable 2.4[Research Report] INRIA Grenoble - Rhône-Alpes. 2015
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hal-01577140v1
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EvoEvo Deliverable 6.5[Research Report] INRIA Grenoble - Rhône-Alpes. 2015
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hal-01577184v1
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EvoEvo Deliverable 2.6[Research Report] INRIA Grenoble - Rhône-Alpes. 2015
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hal-01577144v1
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EvoEvo Deliverable 2.2[Research Report] INRIA Grenoble - Rhône-Alpes. 2015
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hal-01577135v1
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EvoEvo Deliverable 2.3[Research Report] INRIA Grenoble - Rhône-Alpes. 2014
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hal-01577138v1
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EvoEvo Deliverable 2.5[Research Report] INRIA Grenoble - Rhône-Alpes. 2014
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hal-01577142v1
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EvoEvo Deliverable 6.1[Research Report] INRIA Grenoble - Rhône-Alpes. 2014
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hal-01577182v1
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EvoEvo Deliverable 6.2[Research Report] INRIA Grenoble - Rhône-Alpes. 2014
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hal-01577183v1
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EvoEvo Deliverable 1.1[Research Report] INRIA Grenoble - Rhone-Alpes. 2014
Reports
hal-01577124v1
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EvoEvo Deliverable 2.1[Research Report] INRIA Grenoble - Rhône-Alpes. 2014
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hal-01577134v1
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