Ghislain DURIF

Identifiants chercheurs

IdHAL :

ghislain-durif

ORCID :

0000-0003-2567-1401

IdRef :

199670765

arXiv :

durif_g_1

Publications

Article dans une revue (10)

The fate of a polygenic phenotype within the genomic landscapes of introgression in the European seabass hybrid zone Maeva Leitwein,G Durif,E Delpuech,P Gagnaire,Bruno Ernandeet al. Molecular Biology and Evolution, 2024, 41 (9), pp.msae194. ⟨10.1093/molbev/msae194⟩ Article dans une revue hal-04705605v1
Kernel-Based Testing for Single-Cell Differential Analysis Anthony Ozier-Lafontaine,Camille Fourneaux,Ghislain Durif,Polina Arsenteva,Céline Vallotet al. Genome Biology, 2024, 114, ⟨10.1186/s13059-024-03255-1⟩ Article dans une revue hal-04214858v2
A median test for functional data Zaineb Smida,Lionel Cucala,Ali Gannoun,Ghislain Durif Journal of Nonparametric Statistics, 2022, 34 (2), pp.520-553. ⟨10.1080/10485252.2022.2064997⟩ Article dans une revue hal-03658578v1
A Wilcoxon-Mann-Whitney spatial scan statistic for functional data Zaineb Smida,Lionel Cucala,Ali Gannoun,Ghislain Durif Computational Statistics and Data Analysis, 2022, 167, pp.107378. ⟨10.1016/j.csda.2021.107378⟩ Article dans une revue hal-03412009v1
Noninvasive prenatal diagnosis of genetic diseases induced by triplet repeat expansion by linked read haplotyping and Bayesian approach Cathy Liautard-Haag,Ghislain Durif,Charles Vangoethem,David Baux,Anaïs Louiset al. Scientific Reports, 2022, 12 (1), pp.11423. ⟨10.1038/s41598-022-15307-2⟩ Article dans une revue hal-03716132v2
Extending Approximate Bayesian Computation with Supervised Machine Learning to infer demographic history from genetic polymorphisms using DIYABC Random Forest François‐david Collin,Ghislain Durif,Louis Raynal,Eric Lombaert,Mathieu Gautieret al. Molecular Ecology Resources, 2021, 21 (8), pp.2598-2613. ⟨10.1111/1755-0998.13413⟩ Article dans une revue hal-03229207v1
Kernel Operations on the GPU, with Autodiff,without Memory Overflows Benjamin Charlier,Jean Feydy,Joan Glaunès,François-David Collin,Ghislain Durif Journal of Machine Learning Research, 2021, 22 (74), pp.1-6. ⟨10.48550/arXiv.2004.11127⟩ Article dans une revue hal-02517462v2
Divergent clonal differentiation trajectories establish CD8+ memory T cell heterogeneity during acute viral infections in humans Jeff Mold,Laurent Modolo,Joanna Hård,Margherita Zamboni,Anton J.M. Larssonet al. Cell Reports, 2021, 35 (8), pp.109174. ⟨10.1016/j.celrep.2021.109174⟩ Article dans une revue hal-03345357v1
Probabilistic Count Matrix Factorization for Single Cell Expression Data Analysis Ghislain Durif,Laurent Modolo,Jeff E Mold,Sophie Lambert-Lacroix,Franck Picard Bioinformatics, 2019, 35, 20, pp.4011-4019. ⟨10.1093/bioinformatics/btz177⟩ Article dans une revue hal-01649275v3
High Dimensional Classification with combined Adaptive Sparse PLS and Logistic Regression Ghislain Durif,Laurent Modolo,Jakob Michaelsson,Jeff E. Mold,Sophie Lambert-Lacroixet al. Bioinformatics, 2018, 34 (3), pp.485-493. ⟨10.1093/bioinformatics/btx571⟩ Article dans une revue hal-01587360v1

Communication dans un congrès (5)

Nonparametric tests and funStatTest R package for functional data Zaineb Smida,Lionel Cucala,Ali Gannoun,Ghislain Durif JDS 2024, Bordeaux, May 2024, Bordeaux, France Communication dans un congrès hal-04579217v1
Benchopt: Reproducible, efficient and collaborative optimization benchmarks Thomas Moreau,Mathurin Massias,Alexandre Gramfort,Pierre Ablin,Pierre-Antoine Bannieret al. NeurIPS 2022 - 36. Conference on Neural Information Processing Systems, Nov 2022, La Nouvelle Orléans, United States Communication dans un congrès hal-03830604v1
Using genome-wide ancestry pattern in European sea bass to assess phenotypic variation and ensure sustainable aquaculture Maeva Leitwein,Ghislain Durif,Pierre-Alexandre Gagnaire,Alain Vergnet,Frédéric Clotaet al. 6th Symposium on Genomics in Aquaculture, May 2022, Grenade, Spain Communication dans un congrès hal-04185352v1
Statistique de balayage spatial non paramétrique pour données fonctionnelles Zaineb Smida,Lionel Cucala,Ali Gannoun,Ghislain Durif forum de jeunes mathématicien.ne.s, Dec 2021, Besançon, France Communication dans un congrès hal-03476841v1
Probabilistic Count Matrix Factorization for Single Cell Expression Data Analysis Ghislain Durif,Laurent Modolo,Jeff E. Mold,Sophie Lambert-Lacroix,Franck Picard RECOMB 2018 - 22nd Annual International Conference on Research in Computational Molecular Biology, Ecole Polytechnique, Apr 2018, Paris, France. pp.254-255 Communication dans un congrès hal-01962030v1

Poster de conférence (2)

Bayesian inference of parental allele inheritance in fetus for noninvasive prenatal diagnosis Ghislain Durif,Cathy Liautard-Haag,Marie-Claire Vincent StatLearn 2023, Apr 2023, Montpellier, France. , https://statlearn.sciencesconf.org/459803 Poster de conférence hal-04059861v1
Bayesian inference of parental allele inheritance in fetus for noninvasive prenatal diagnosis Ghislain Durif,Cathy Liautard-Haag,Marie-Claire Vincent Statistical Methods for Post-Genomic Data (SMPGD) 2023, Feb 2023, Gand, Belgium. Poster de conférence hal-03989144v1

Pré-publication, Document de travail (1)

A median test for functional data Zaineb Smida,Lionel Cucala,Ali Gannoun,Ghislain Durif 2022 Pré-publication, Document de travail hal-03560362v2

Thèse (1)

Multivariate analysis of high-throughput sequencing data Ghislain Durif Statistics [math.ST]. Université de Lyon, 2016. English. ⟨NNT : 2016LYSE1334⟩ Thèse tel-01581175v1

Logiciel (3)

kAOV : kernel hypothesis testing on general designs Polina Arsenteva,Anthony Ozier-Lafontaine,Franck Picard,Bertrand Michel,Ghislain Durif 2025, ⟨swh:1:dir:ee20578ebd77d440f1ca47c234502063c52e587a;origin=https://github.com/LMJL-Alea/kAOV;visit=swh:1:snp:a7756669c2a42e4c3998be658e10efa5a25f112c;anchor=swh:1:rev:65d99ffcb8629b2eb799cdfae4a4a64bd28517e5⟩ Logiciel hal-04894520v1
pppca: Principal Component Analysis for replicated point process data. Ghislain Durif,Franck Picard,Vincent Rivoirard,Angelina Roche,Victor Panaretos 2024, ⟨swh:1:dir:89086991867b92ca6d6a574d5ea1856712a60a7f;origin=https://github.com/franckpicard/pppca;visit=swh:1:snp:0ae32effe07f6eb36867b116c91e3b99cbb00acd;anchor=swh:1:rev:9c55bf54091eb823b3f21517728f7abb2e01cc46⟩ Logiciel hal-04894590v1
ktest : two-sample kernel testing Anthony Ozier-Lafontaine,Polina Arsenteva,Ghislain Durif,Franck Picard 2024, ⟨swh:1:dir:669af0c58f89c04be2532e6591eed64de4f4a320;origin=https://github.com/LMJL-Alea/ktest;visit=swh:1:snp:b02da5de23e7a33c50c8159f022c2022426c8d88;anchor=swh:1:rev:54eeffaede8e15bbdef81e5367a691931d6b8171⟩ Logiciel hal-04547380v1