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The Cauchy Process on Phylogenies: a Tractable Model for Pulsed Evolution
Paul Bastide
,
Gilles Didier
Journal articles
hal-04061506v2
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Editorial: Timetrees: Incorporating fossils and molecules
Michel Laurin
,
Gilles Didier
,
Rachel Warnock
Journal articles
hal-03709640v1
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Probabilities of tree topologies with temporal constraints and diversification shifts
Gilles Didier
Journal articles
hal-01865425v1
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Distributions of extinction times from fossil ages and tree topologies: the example of mid-Permian synapsid extinctions
Gilles Didier
,
Michel Laurin
Journal articles
hal-03258099v3
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The fossil record of camelids demonstrates a late divergence between Bactrian camel and dromedary
Denis Geraads
,
Gilles Didier
,
Andrew Barr
,
Denné Reed
,
Michel Laurin
Journal articles
hal-02895911v1
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Exact distribution of divergence times from fossil ages and tree topologies
Gilles Didier
,
Michel Laurin
Journal articles
hal-01952736v1
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Optimal pattern matching algorithms
Gilles Didier
Journal articles
hal-01310164v1
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Parsimony‐based test for identifying changes in evolutionary trends for quantitative characters: implications for the origin of the amniotic egg
Gilles Didier
,
Olivier Chabrol
,
Michel Laurin
Journal articles
hal-01609238v1
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Testing for correlation between traits under directional evolution
Manuela Royer-Carenzi
,
Gilles Didier
Journal articles
hal-02057232v1
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Identifying communities from multiplex biological networks by randomized optimization of modularity
Gilles Didier
,
Alberto Valdeolivas
,
Anaïs Baudot
Journal articles
hal-01881798v1
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Detecting the molecular basis of phenotypic convergence
Olivier Chabrol
,
Manuela Royer-Carenzi
,
Pierre Pontarotti
,
Gilles Didier
Journal articles
hal-01532965v1
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Time-dependent-asymmetric-linear-parsimonious ancestral state reconstruction
Gilles Didier
Journal articles
hal-01410313v1
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Designing optimal-and fast-on-average pattern matching algorithms
Gilles Didier
,
Laurent Tichit
Journal of Discrete Algorithms, 2017, 42, pp.45-60
Journal articles
hal-01310165v1
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Likelihood of tree topologies with fossils and diversification rate estimation
Gilles Didier
,
Marine Fau
,
Michel Laurin
Journal articles
hal-01270368v1
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A comparison of ancestral state reconstruction methods for quantitative characters
Manuela Royer-Carenzi
,
Gilles Didier
Journal articles
hal-01261430v1
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Identifying communities from multiplex biological networks.
Gilles Didier
,
Christine Brun
,
Anaïs Baudot
Journal articles
hal-01255282v1
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Choosing the best ancestral character state reconstruction method.
Manuela Royer-Carenzi
,
Pierre Pontarotti
,
Gilles Didier
Journal articles
hal-00830797v1
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The reconstructed evolutionary process with the fossil record
Gilles Didier
,
Manuela Royer-Carenzi
,
Michel Laurin
Journal articles
hal-01105197v1
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Relations between gene regulatory networks and cell dynamics in Boolean models
Gilles Didier
,
Elisabeth Remy
Journal articles
hal-01258494v1
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Variable length local decoding and alignment-free sequence comparison
Gilles Didier
,
Eduardo L Corel
,
Ivan Laprevotte
,
Alex Grossmann
,
Claudine Landès-Devauchelle
Journal articles
hal-01614104v1
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Mapping multivalued onto Boolean dynamics
Gilles Didier
,
Elisabeth Remy
,
Claudine Chaouiya
Journal articles
hal-00656334v1
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Parametric Maximum Parsimonious Reconstruction on Trees
Gilles Didier
Journal articles
hal-01258496v1
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MS4 - Multi-Scale Selector of Sequence Signatures: an alignment-free method for the classification of biological sequences
Gilles Didier
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Eduardo L Corel
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Florian Pitschi
,
Ivan Laprevotte
,
Gilles Grasseau
Journal articles
hal-01614124v1
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TranscriptomeBrowser: a powerful and flexible toolbox to explore productively the transcriptional landscape of the Gene Expression Omnibus database
F. Lopez
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J. Textoris
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A. Bergon
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G. Didier
,
E. Rémy
Journal articles
hal-01595819v1
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Mapping sequences by parts
Gilles Didier
,
Carito Guziolowski
Journal articles
inria-00180004v1
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Comparing sequences without using alignments: application to HIV/SIV subtyping
Gilles Didier
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Laurent Debomy
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Maude Pupin
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Ming Zhang
,
Alexander Grossmann
Journal articles
inria-00289069v1
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Character sets of strings
Gilles Didier
,
Thomas Schmidt
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Jens Stoye
,
Dekel Tsur
Journal articles
hal-01614122v1
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Coding with variable block maps
Gilles Didier
,
Vicente Acuña
,
Alejandro Maass
Journal articles
hal-01614117v1
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Local Decoding of Sequences and Alignment-Free Comparison
Gilles Didier
,
Ivan Laprevotte
,
Maude Pupin
,
Alain Hénaut
Journal articles
inria-00289089v1
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The operons, a criterion to compare the reliability of transcriptome analysis tools: ICA is more reliable than ANOVA, PLS and PCA
Gilles Didier
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Anne-Sophie Carpentier
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Alessandra Riva
,
Pierre Tisseur
,
Alain Hénaut
Journal articles
hal-01614113v1
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GeneANOVA--gene expression analysis of variance
Gilles Didier
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P. Brezellec
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E. Remy
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A. Henaut
Journal articles
hal-01614111v1
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HIV-1 and HIV-2 LTR Nucleotide Sequences: Assessment of the Alignment by N-block Presentation, "Retroviral Signatures" of Overrepeated Oligonucleotides, and a Probable Important Role of Scrambled Stepwise Duplications/Deletions in Molecular Evolution
Gilles Didier
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I. Laprevotte
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M. Pupin
,
E. Coward
,
C. Terzian
Journal articles
hal-01614106v1
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Caractérisation des N-écritures et application à l'étude des suites de complexité ultimement n + cste
Gilles Didier
Journal articles
hal-01614129v1
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Codages de rotations et fractions continues
Gilles Didier
Journal articles
hal-01614096v1
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Combinatoire des codages de rotations
Gilles Didier
Journal articles
hal-01614102v1
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Échanges de trois d'intervalles et suites sturmiennes
Gilles Didier
Journal de Théorie des Nombres de Bordeaux, 1997, 9 (2), pp.463-478
Journal articles
hal-01948117v1
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