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Gilles FIscher

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An integrative taxonomy approach reveals Saccharomyces chiloensis sp. nov. as a newly discovered species from Coastal Patagonia

Tomas A Peña , Pablo Villarreal , Nicolas Agier , Matteo de Chiara , Tomas Barría
PLoS Genetics, 2024, 20 (9), pp.e1011396. ⟨10.1371/journal.pgen.1011396⟩
Journal articles hal-04797405v1
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ScRAPdb: an integrated pan-omics database for the Saccharomyces cerevisiae reference assembly panel

Zepu Miao , Yifan Ren , Andrea Tarabini , Ludong Yang , Huihui Li
Nucleic Acids Research, 2024, pp.gkae955. ⟨10.1093/nar/gkae955⟩
Journal articles hal-04797383v1
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Domestication signatures in the non-conventional yeast Lachancea cidri

Pablo Villarreal , Samuel O'Donnell , Nicolas Agier , Felipe Muñoz-Guzman , Jose Benavides-Parra
mSystems, 2024, 9 (1), ⟨10.1128/msystems.01058-23⟩
Journal articles hal-04797420v1
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Telomerase-independent survival leads to a mosaic of complex subtelomere rearrangements in Chlamydomonas reinhardtii

Frédéric Chaux , Nicolas Agier , Clotilde Garrido , Gilles Fischer , Stephan Eberhard
Genome Research, 2023, 33 (9), pp.1582-1598. ⟨10.1101/gr.278043.123⟩
Journal articles hal-04262846v1
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Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae

Samuel O’donnell , Jia-Xing Yue , Omar Abou Saada , Nicolas Agier , Claudia Caradec
Nature Genetics, 2023, 55 (8), pp.1390 - 1399. ⟨10.1038/s41588-023-01459-y⟩
Journal articles hal-04305689v1
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Late Pleistocene‐dated divergence between South Hemisphere populations of the non‐conventional yeast L . cidri

Pablo Villarreal , Carlos Villarroel , Sam O'Donnell , Nicolas Agier , Julian Quintero-Galvis
Environmental Microbiology, 2022, ⟨10.1111/1462-2920.16103⟩
Journal articles hal-03873794v1
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An evolutionary model identifies the main evolutionary biases for the evolution of genome-replication profiles

Rossana Droghetti , Nicolas Agier , Gilles Fischer , Marco Gherardi , Marco Cosentino Lagomarsino
eLife, 2021, 10, ⟨10.7554/eLife.63542⟩
Journal articles hal-03451843v1
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The budding yeast life cycle: More complex than anticipated?

Gilles Fischer , Gianni Liti , Bertrand Llorente
Yeast, 2021, 38 (1), pp.5-11. ⟨10.1002/yea.3533⟩
Journal articles hal-03086108v1
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Molecular profiling of beer wort fermentation diversity across natural Saccharomyces eubayanus isolates

Wladimir Mardones , Carlos Villarroel , Kristoffer Krogerus , Sebastian Tapia , Kamila Urbina
Microbial Biotechnology, 2020, 13 (4), pp.1012-1025. ⟨10.1111/1751-7915.13545⟩
Journal articles hal-03086238v1
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Phylogenetic Reconstruction Based on Synteny Block and Gene Adjacencies

Guénola Drillon , Raphaël Champeimont , Francesco Oteri , Gilles Fischer , Alessandra Carbone
Molecular Biology and Evolution, 2020, 37 (9), pp.2747-2762. ⟨10.1093/molbev/msaa114⟩
Journal articles hal-02968249v1
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MUM&Co: accurate detection of all SV types through whole-genome alignment

Samuel O'Donnell , Gilles Fischer
Bioinformatics, 2020, 36 (10), ⟨10.1093/bioinformatics/btaa115⟩
Journal articles hal-02879014v1
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Highly Contiguous Nanopore Genome Assembly of Chlamydomonas reinhardtii CC-1690

Samuel O’donnell , Frederic Chaux , Gilles Fischer
Microbiology Resource Announcements, 2020, 9 (37), ⟨10.1128/MRA.00726-20⟩
Journal articles hal-03086240v1

Phylogenetic Reconstruction Based on Synteny Block and Gene Adjacencies

Guénola Drillon , Raphaël Champeimont , Francesco Oteri , Gilles Fischer , Alessandra Carbone
Molecular Biology and Evolution, 2020, 37 (9), pp.2747-2762. ⟨10.1093/molbev/msaa114⟩
Journal articles hal-03086110v1

André Goffeau's imprinting on second generation yeast “genomologists”

Cécile Fairhead , Gilles Fischer , Gianni Liti , Cécile Neuvéglise , Joseph Schacherer
Yeast, 2019, 36 (4), pp.167-175. ⟨10.1002/yea.3377⟩
Journal articles hal-02381500v1
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Reshuffling yeast chromosomes with CRISPR/ Cas9

Aubin Fleiss , Samuel O'Donnell , Téo Fournier , Wenqing Lu , Nicolas Agier
PLoS Genetics, 2019, 15 (8), pp.e1008332. ⟨10.1371/journal.pgen.1008332⟩
Journal articles hal-02303598v1
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Characterizing meiotic chromosomes' structure and pairing using a designer sequence optimized for Hi‐C

Héloise Muller , Vittore F Scolari , Nicolas Agier , Aurele Piazza , Agnès Thierry
Molecular Systems Biology, 2018, 14 (7), pp.e8293. ⟨10.15252/msb.20188293⟩
Journal articles hal-01890095v1

The evolution of the temporal program of genome replication

Nicolas Agier , Stéphane Delmas , Qing Zhang , Aubin Fleiss , Yan Jaszczyszyn
Nature Communications, 2018, 9 (1), pp.2199. ⟨10.1038/s41467-018-04628-4⟩
Journal articles hal-02175123v1

A Molecular Portrait of De Novo Genes in Yeasts

Nikolaos Vakirlis , Alex Hebert , Dana Opulente , Guillaume Achaz , Chris Todd Hittinger
Molecular Biology and Evolution, 2018, 35 (3), pp.631-645. ⟨10.1093/molbev/msx315⟩
Journal articles hal-02164404v1
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Contrasting evolutionary genome dynamics between domesticated and wild yeasts

Jia-Xing Yue , Jing Li , Louise Aigrain , Johan Hallin , Karl Persson
Nature Genetics, 2017, 49 (6), pp.913-924. ⟨10.1038/ng.3847⟩
Journal articles hal-01546021v1
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Digital Receivers for Low-Frequency Radio Telescopes UTR-2, URAN, GURT

V. Zakharenko , A. Konovalenko , Philippe Zarka , O. Ulyanov , M. Sidorchuk
Journal of Astronomical Instrumentation, 2016, 05 (04), pp.1641010. ⟨10.1142/S2251171716410105⟩
Journal articles hal-02415521v1

Dissection of quantitative traits by bulk segregant mapping in a protoploid yeast species.

Anastasie Sigwalt , Claudia Caradec , Christian Brion , Jing Hou , Jacky de Montigny
FEMS Yeast Research, 2016, 16 (5), ⟨10.1093/femsyr/fow056⟩
Journal articles hal-01588206v1
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Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus

Nikolaos Vakirlis , Véronique Sarilar , Guénola Drillon , Aubin Fleiss , Nicolas Agier
Genome Research, 2016, 26 (7), pp.918-932. ⟨10.1101/gr.204420.116⟩
Journal articles hal-01331620v1
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The Hera Saturn entry probe mission

O. Mousis , D.H. Atkinson , T. Spilker , E. Venkatapathy , J. Poncy
Planetary and Space Science, 2016, 130, pp.80-103. ⟨10.1016/j.pss.2015.06.020⟩
Journal articles insu-01351010v1
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bz-rates: a web-tool to estimate mutation rates from fluctuation analysis

Alexandre Gillet-Markowska , Guillaume Louvel , Gilles Fischer
G3, 2015, 5 (11), pp.2323-2327. ⟨10.1534/g3.115.019836⟩
Journal articles hal-01264305v1

Interdisciplinary assessment of sea-level rise and climate change impacts on the lower Nile delta, Egypt.

J. Sušnik , L. S. Vamvakeridou-Lyroudia , N. Baumert , J. Kloos , F.G. Renaud
Science of the Total Environment, 2015, Towards a better understanding of the links between stressors, hazard assessment and ecosystem services under water scarcity, 503-504, pp.279-288. ⟨10.1016/j.scitotenv.2014.06.111⟩
Journal articles halshs-01250616v1

Ulysses: accurate detection of low-frequency structural variations in large insert-size sequencing libraries

Alexandre Gillet-Markowska , Hugues Richard , Gilles Fischer , Ingrid Lafontaine
Bioinformatics, 2015, 31 (6), pp.801-808. ⟨10.1093/bioinformatics/btu730⟩
Journal articles hal-01528522v1
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Population genomics reveals chromosome-scale heterogeneous evolution in a protoploid yeast

Anne Friedrich , Paul Jung , Cyrielle Reisser , Gilles Fischer , Joseph Schacherer
Molecular Biology and Evolution, 2014, 32 (1), pp.184-192. ⟨10.1093/molbev/msu295⟩
Journal articles hal-01087685v1
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SynChro: A Fast and Easy Tool to Reconstruct and Visualize Synteny Blocks along Eukaryotic Chromosomes

Guénola Drillon , Alessandra Carbone , Gilles Fischer
PLoS ONE, 2014, 9 (3), pp.e92621. ⟨10.1371/journal.pone.0092621⟩
Journal articles hal-01358096v1

A set of genetically diverged Saccharomyces cerevisiae strains with markerless deletions of multiple auxotrophic genes

Helene Louvel , Alexandre Gillet-Markowska , Gianni Liti , Gilles Fischer
Yeast, 2014, 31 (3), pp.91-101. ⟨10.1002/yea.2991⟩
Journal articles hal-01528407v1
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In-flight calibration of STEREO-B/WAVES antenna system

M. Panchenko , W. Macher , H. Rucker , G. Fischer , T. Oswald
Radio Science, 2014, 49 (3), pp.146-156. ⟨10.1002/2013RS005197⟩
Journal articles hal-02541905v1

Total synthesis of a functional designer eukaryotic chromosome.

Narayana Annaluru , Héloïse Muller , Leslie A. Mitchell , Sivaprakash Ramalingam , Giovanni Stracquadanio
Science, 2014, 344 (6179), pp.55-8. ⟨10.1126/science.1249252⟩
Journal articles pasteur-01420002v1
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Filling annotation gaps in yeast genomes using genome-wide contact maps.

Hervé Marie-Nelly , Martial Marbouty , Axel Cournac , Gianni Liti , Gilles Fischer
Bioinformatics, 2014, 30 (15), pp.2105-13. ⟨10.1093/bioinformatics/btu162⟩
Journal articles pasteur-01488132v1

The Spatiotemporal Program of Replication in the Genome of Lachancea kluyveri

Nicolas Agier , Orso Maria Romano , Fabrice Touzain , Marco Cosentino Lagomarsino , Gilles Fischer
Genome Biology and Evolution, 2013, 5 (2), pp.370-388. ⟨10.1093/gbe/evt014⟩
Journal articles hal-01528417v1

Earliest recorded ground-based decameter wavelength observations of Saturn’s lightning during the giant E-storm detected by Cassini spacecraft in early 2006

A.A. Konovalenko , N.N. Kalinichenko , H.O. Rucker , A. Lecacheux , G. Fischer
Icarus, 2013, 224 (1), pp.14-23. ⟨10.1016/j.icarus.2012.07.024⟩
Journal articles insu-01351051v1

Combinatorics of chromosomal rearrangements based on synteny blocks and synteny packs

Guénola Drillon , Alessandra Carbone , Gilles Fischer
Journal of Logic and Computation, 2013, 23 (4, SI), pp.815-838. ⟨10.1093/logcom/exr047⟩
Journal articles hal-01528430v1

The Mutational Profile of the Yeast Genome Is Shaped by Replication

Nicolas Agier , Gilles Fischer
Molecular Biology and Evolution, 2012, 29 (3), pp.905-913. ⟨10.1093/molbev/msr280⟩
Journal articles hal-01528431v1
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Comparative study on synteny between yeasts and vertebrates

Guénola Drillon , Fischer Gilles
Comptes Rendus Biologies, 2011, 334 ((8-9)), pp.629-638. ⟨10.1016/j.crvi.2011.05.011⟩
Journal articles hal-00626818v1

Luminosity Determination in pp Collisions at sqrt(s)=7 TeV Using the ATLAS Detector at the LHC

G. Aad , B. Abbott , J. Abdallah , A.A. Abdelalim , Abdelmalek Abdesselam
European Physical Journal C: Particles and Fields, 2011, 71, pp.1630. ⟨10.1140/epjc/s10052-011-1630-5⟩
Journal articles in2p3-00555068v1

X-shooter, the new wide band intermediate resolution spectrograph at the ESO Very Large Telescope

J. Vernet , H. Dekker , S. d'Odorico , L. Kaper , P. Kjaergaard
Astronomy & Astrophysics - A&A, 2011, 536, pp.A105. ⟨10.1051/0004-6361/201117752⟩
Journal articles hal-00708794v1

Studies of the performance of the ATLAS detector using cosmic-ray muons

G. Aad , B. Abbott , J. Abdallah , A.A. Abdelalim , A. Abdesselam
European Physical Journal C: Particles and Fields, 2011, 71, pp.1593. ⟨10.1140/epjc/s10052-011-1593-6⟩
Journal articles in2p3-00541736v1

Search for high-mass states with one lepton plus missing transverse momentum in proton-proton collisions at sqrt(s) = 7 TeV with the ATLAS detector

G. Aad , B. Abbott , J. Abdallah , A.A. Abdelalim , Abdelmalek Abdesselam
Physics Letters B, 2011, 701, pp.50-69. ⟨10.1016/j.physletb.2011.05.043⟩
Journal articles in2p3-00575330v1

Search for Quark Contact Interactions in Dijet Angular Distributions in pp Collisions at sqrt(s) = 7 TeV Measured with the ATLAS Detector

G. Aad , B. Abbott , J. Abdallah , A.A. Abdelalim , A. Abdesselam
Physics Letters B, 2011, 694, pp.327-345. ⟨10.1016/j.physletb.2010.10.021⟩
Journal articles in2p3-00531451v1

Search for stable hadronising squarks and gluinos with the ATLAS experiment at the LHC

G. Aad , B. Abbott , J. Abdallah , A.A. Abdelalim , A. Abdesselam
Physics Letters B, 2011, 701, pp.1-19. ⟨10.1016/j.physletb.2011.05.010⟩
Journal articles in2p3-00575808v1

Search for Diphoton Events with Large Missing Transverse Energy with 36 pb^-1 of 7 TeV Proton-Proton Collision Data with the ATLAS Detector

G. Aad , B. Abbott , J. Abdallah , A.A. Abdelalim , Abdelmalek Abdesselam
European Physical Journal C: Particles and Fields, 2011, 71, pp.1744. ⟨10.1140/epjc/s10052-011-1744-9⟩
Journal articles in2p3-00606029v1

Search for Massive Long-lived Highly Ionising Particles with the ATLAS Detector at the LHC

G. Aad , B. Abbott , J. Abdallah , A.A. Abdelalim , A. Abdesselam
Physics Letters B, 2011, 698, pp.353-370. ⟨10.1016/j.physletb.2011.03.033⟩
Journal articles in2p3-00564521v1

Commissioning of the ATLAS Muon Spectrometer with Cosmic Rays

G. Aad , B. Abbott , J. Abdallah , A.A. Abdelalim , A. Abdesselam
European Physical Journal C: Particles and Fields, 2010, 70, pp.875-916. ⟨10.1140/epjc/s10052-010-1415-2⟩
Journal articles in2p3-00495276v1