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Gilles Vergnaud

46
Documents
Identifiants chercheurs

Présentation

Go to [my google scholar CV](https://scholar.google.fr/citations?user=_u3O3k4AAAAJ&hl=fr) for detailed publications citation index.
Go to [my google scholar CV](https://scholar.google.fr/citations?user=_u3O3k4AAAAJ&hl=fr) for detailed publications citation index.

Publications

christine-pourcel
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CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers

Christine Pourcel , Marie Touchon , Nicolas Villeriot , Jean-Philippe Vernadet , David Couvin
Nucleic Acids Research, 2020, 48 (D1), pp.D535-D544. ⟨10.1093/nar/gkz915⟩
Article dans une revue hal-02990278v1
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Investigation of $Pseudomonas\ aeruginosa$ strain PcyII-10 variants resisting infection by N4-like phage Ab09 in search for genes involved in phage adsorption

Libera Latino , Cédric Midoux , Gilles Vergnaud , Christine Pourcel
PLoS ONE, 2019, 14 (4), pp.e0215456. ⟨10.1371/journal.pone.0215456⟩
Article dans une revue hal-02173138v1

Complete Genome Sequences of Five Acinetobacter baumannii Phages from Abidjan, Côte d'Ivoire

Christiane Essoh , Jean-Philippe Vernadet , Gilles Vergnaud , Adama Coulibaly , Adèle Kakou-N'Douba
Microbiology Resource Announcements, 2019, 8 (1), ⟨10.1128/MRA.01358-18⟩
Article dans une revue hal-02170278v1

Associations between Mycobacterium tuberculosis Beijing genotype and drug resistance to four first-line drugs: a survey in China

Haican Liu , Yuanyuan Zhang , Zhiguang Liu , Jinghua Liu , Yolande Hauck
Frontiers of Medicine, 2018, 12 (1), pp.92--97. ⟨10.1007/s11684-017-0610-z⟩
Article dans une revue hal-02180796v1
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Genotypic Expansion Within the Population Structure of Classical Brucella Species Revealed by MLVA16 Typing of 1404 Brucella Isolates From Different Animal and Geographic Origins, 1974-2006

Gilles Vergnaud , Yolande Hauck , David Christiany , Brendan Daoud , Christine Pourcel
Frontiers in Microbiology, 2018, 9, 11 p. ⟨10.3389/fmicb.2018.01545⟩
Article dans une revue hal-02184813v1
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CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

David Couvin , Aude Bernheim , Claire Toffano-Nioche , Marie Touchon , Juraj Michalik
Nucleic Acids Research, 2018, 46 (W1), pp.W246-W251. ⟨10.1093/nar/gky425⟩
Article dans une revue pasteur-02098389v1
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Transposition behavior revealed by high-resolution description of $Pseudomonas\ Aeruginosa$ saltovirus integration sites

Gilles Vergnaud , Cédric Midoux , Yann Blouin , Maria Bourkaltseva , Victor Krylov
Viruses, 2018, 10 (5), pp.245. ⟨10.3390/v10050245⟩
Article dans une revue hal-02184815v1

A carrier state is established in Pseudomonas aeruginosa by phage LeviOr01, a newly isolated ssRNA levivirus

Christine Pourcel , Cédric Midoux , Gilles Vergnaud , Libera Latino
Journal of General Virology, 2017, 98 (8), pp.2181 - 2189. ⟨10.1099/jgv.0.000883⟩
Article dans une revue hal-01879191v1

Correction: Comparison of French and Worldwide Bacillus anthracis Strains Favors a Recent, Post-Columbian Origin of the Predominant North-American Clade

Gilles Vergnaud , Guillaume Girault , Simon Thierry , Christine Pourcel , Nora Madani
PLoS ONE, 2017, 12 (6), pp.e0180603. ⟨10.1371/journal.pone.0180603⟩
Article dans une revue hal-01879193v1
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Large Preferred Region for Packaging of Bacterial DNA by phiC725A, a Novel Pseudomonas aeruginosa F116-Like Bacteriophage

Christine Pourcel , Cédric Midoux , Yolande Hauck , Gilles Vergnaud , Libera Latino
PLoS ONE, 2017, 12 (1), pp.e0169684. ⟨10.1371/journal.pone.0169684⟩
Article dans une revue hal-01879155v1
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Comparison of French and Worldwide Bacillus anthracis Strains Favors a Recent, Post-Columbian Origin of the Predominant North-American Clade

Gilles Vergnaud , Guillaume Girault , Simon Thierry , Christine Pourcel , Nora Madani
PLoS ONE, 2016, 11 (2), pp.0146216. ⟨10.1371/journal.pone.0146216⟩
Article dans une revue hal-01278435v1
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Pseudolysogeny and sequential mutations build multiresistance to virulent bacteriophages in Pseudomonas aeruginosa

Libera Latino , Cédric Midoux , Yolande Hauck , Gilles Vergnaud , Christine Pourcel
Microbiology, 2016, ⟨10.1099/mic.0.000263⟩
Article dans une revue hal-01280758v1
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Complete Genome Sequences of Pseudomonas aeruginosa Phages vB_PaeP_PcyII-10_P3P1 and vB_PaeM_PcyII-10_PII10A.

Christine Pourcel , Cédric Midoux , Libera Latino , Marie-Agnès Petit , Gilles Vergnaud
Genome Announcements, 2016, 4 (6), pp.e00916-16. ⟨10.1128/genomeA.00916-16⟩
Article dans une revue hal-01439325v1
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Investigation of a Large Collection of Pseudomonas aeruginosa Bacteriophages Collected from a Single Environmental Source in Abidjan, Côte d'Ivoire.

Christiane Essoh , Libera Latino , Cédric Midoux , Yann Blouin , Guillaume Loukou
PLoS ONE, 2015, 10 (6), pp.e0130548. ⟨10.1371/journal.pone.0130548⟩
Article dans une revue hal-01188392v1
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Development of a Multiple-Locus Variable-Number Tandem-Repeat Typing Scheme for Genetic Fingerprinting of Burkholderia cenocepacia and Application to Nationwide Epidemiological Analysis

Christine Segonds , Michelle Thouverez , Antoine Barthe , Nadège Bossuet-Greif , Lenka Tisseyre
Journal of Clinical Microbiology, 2015, 53 (2), pp.398-409. ⟨10.1128/JCM.02473-14⟩
Article dans une revue hal-01110749v1

A novel multiple locus variable number of tandem repeat (VNTR) analysis (MLVA) method for Propionibacterium acnes

Yolande Hauck , Charles Soler , Patrick Gérôme , Rithy Vong , Christine Macnab
Infection, Genetics and Evolution, 2015, 33, pp.233-41. ⟨10.1016/j.meegid.2015.05.009⟩
Article dans une revue hal-01188389v1
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Development of a Multiple Loci Variable Number of Tandem Repeats Analysis (MLVA) to Unravel the Intra-Pathovar Structure of Pseudomonas syringae pv. actinidiae Populations Worldwide

Serena Ciarroni , Lorenzo Gallipoli , Maria C Taratufolo , Margi I Butler , Russell T M Poulter
PLoS ONE, 2014, 10 (8), pp.e0135310. ⟨10.1371/journal.pone.0135310⟩
Article dans une revue hal-01214203v1

Yersinia pseudotuberculosis ST42 (O:1) Strain Misidentified as Yersinia pestis by Mass Spectrometry Analysis.

Patrick Gérôme , Philippe Le Flèche , Yann Blouin , Holger C Scholz , François M Thibault
Genome Announc, 2014, 2 (3), [Epub ahead of print]. ⟨10.1128/genomeA.00435-14⟩
Article dans une revue hal-01009200v1
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Staphylococcus aureus from 152 cases of bovine, ovine and caprine mastitis investigated by Multiple-locus variable number of tandem repeat analysis (MLVA)

Dominique Bergonier , Daniel Sobral , Andrea T Fessler , Eric Jacquet , Florence Gilbert
Veterinary Research, 2014, 45 (1), pp.97. ⟨10.1186/s13567-014-0097-4⟩
Article dans une revue hal-01123402v1

Progenitor "Mycobacterium canettii" clone responsible for lymph node tuberculosis epidemic, Djibouti.

Yann Blouin , Géraldine Cazajous , Céline Dehan , Charles Soler , Rithy Vong
Emerging Infectious Diseases, 2014, 20 (1), pp.21-8
Article dans une revue hal-00948497v1

Draft Genome Sequences of Five Yersinia pseudotuberculosis ST19 Isolates and One Isolate Variant.

Mikhail E Platonov , Yann Blouin , Vera V Evseeva , Maxim V Afanas'Ev , Christine Pourcel
Genome Announc, 2013, 1 (2), pii e00122-130. ⟨10.1128/genomeA.00122-13⟩
Article dans une revue hal-00813384v1

The Susceptibility of Pseudomonas aeruginosa Strains from Cystic Fibrosis Patients to Bacteriophages.

Christiane Essoh , Yann Blouin , Guillaume Loukou , Arsher Cablanmian , Serge Lathro
PLoS ONE, 2013, 8 (4), pp.e60575. ⟨10.1371/journal.pone.0060575⟩
Article dans une revue hal-00822766v1
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High Throughput Multiple Locus Variable Number of Tandem Repeat Analysis (MLVA) of Staphylococcus aureus from Human, Animal and Food Sources.

Daniel Sobral , Stefan Schwarz , Dominique Bergonier , Anne Brisabois , Andrea T Fessler
PLoS ONE, 2012, 7 (5), pp.e33967. ⟨10.1371/journal.pone.0033967⟩
Article dans une revue hal-00695986v1

Significance of the Identification in the Horn of Africa of an Exceptionally Deep Branching Mycobacterium tuberculosis Clade.

Yann Blouin , Yolande Hauck , Charles Soler , Michel Fabre , Rithy Vong
PLoS ONE, 2012, 7 (12), pp.e52841. ⟨10.1371/journal.pone.0052841⟩
Article dans une revue hal-00772379v1

Diversity of Acinetobacter baumannii in Four French Military Hospitals, as Assessed by Multiple Locus Variable Number of Tandem Repeats Analysis.

Yolande Hauck , Charles Soler , Patrick Jault , Audrey Mérens , Patrick Gérome
PLoS ONE, 2012, 7 (9), pp.e44597. ⟨10.1371/journal.pone.0044597⟩
Article dans une revue hal-00734019v1

Rapid Identification of International Multidrug-Resistant Pseudomonas aeruginosa Clones by Multiple-Locus Variable Number of Tandem Repeats Analysis and Investigation of Their Susceptibility to Lytic Bacteriophages.

Jérôme Larché , Flavie Pouillot , Christiane Essoh , Balázs Libisch , Monica Straut
Antimicrobial Agents and Chemotherapy, 2012, 56 (12), pp.6175-80. ⟨10.1128/AAC.01233-12⟩
Article dans une revue hal-00752317v1

Investigation of the population structure of Legionella pneumophila by analysis of tandem repeat copy number and internal sequence variation.

Paolo Visca , Silvia d'Arezzo , Françoise Ramisse , Yevgeniy Gelfand , Gary Benson
Microbiology, 2011, 157 (Pt 9), pp.2582-94. ⟨10.1099/mic.0.047258-0⟩
Article dans une revue hal-00633000v1

Identification of Variable-Number Tandem-Repeat (VNTR) Sequences in Acinetobacter baumannii and Interlaboratory Validation of an Optimized Multiple-Locus VNTR Analysis Typing Scheme.

Christine Pourcel , Fabrizia Minandri , Yolande Hauck , Silvia d'Arezzo , Francesco Imperi
Journal of Clinical Microbiology, 2011, 49 (2), pp.539-48. ⟨10.1128/JCM.02003-10⟩
Article dans une revue hal-00574235v1

Investigation on Mycobacterium tuberculosis Diversity in China and the Origin of the Beijing Clade.

Kanglin Wan , Jinghua Liu , Yolande Hauck , Yuanyuan Zhang , Jie Liu
PLoS ONE, 2011, 6 (12), pp.e29190. ⟨10.1371/journal.pone.0029190⟩
Article dans une revue hal-00657918v1

Molecular characteristics of "Mycobacterium canettii" the smooth Mycobacterium tuberculosis bacilli.

Michel Fabre , Yolande Hauck , Charles Soler , Jean-Louis Koeck , Jakko van Ingen
Infection, Genetics and Evolution, 2010, 10 (8), pp.1165-73. ⟨10.1016/j.meegid.2010.07.016⟩
Article dans une revue hal-00534312v1

Longitudinal survey of Staphylococcus aureus in cystic fibrosis patients using a multiple-locus variable-number of tandem-repeats analysis method.

Hoang Vu-Thien , Katia Hormigos , Gaëlle Corbineau , Brigitte Fauroux , Harriet Corvol
BMC Microbiology, 2010, 10, pp.24. ⟨10.1186/1471-2180-10-24⟩
Article dans une revue hal-00506420v1

Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs) for the Genotyping of Bacterial Pathogens.

Ibtissem Grissa , Gilles Vergnaud , Christine Pourcel
Methods in Molecular Biology, 2009, 551, pp.105-16. ⟨10.1007/978-1-60327-999-4_9⟩
Article dans une revue hal-00397745v1

Multiple locus variable number of tandem repeats analysis.

Gilles Vergnaud , Christine Pourcel
Methods in Molecular Biology, 2009, 551, pp.141-58. ⟨10.1007/978-1-60327-999-4_12⟩
Article dans une revue hal-00397743v1

Genotyping and phylogenetic analysis of Yersinia pestis by MLVA: insights into the worldwide expansion of Central Asia plague foci.

Yanjun Li , Yujun Cui , Yolande Hauck , Mikhail E Platonov , Erhei Dai
PLoS ONE, 2009, 4 (6), pp.e6000. ⟨10.1371/journal.pone.0006000⟩
Article dans une revue hal-00399011v1

Improved MLVA assay for Staphylococcus aureus providing a highly informative genotyping technique together with strong phylogenetic value.

Christine Pourcel , Katia Hormigos , Lucie Onteniente , Olga Sakwinska , Ruud H Deurenberg
Journal of Clinical Microbiology, 2009, epub ahead of print. ⟨10.1128/JCM.00267-09⟩
Article dans une revue hal-00414260v1

Comparison of two commercial assays for the characterization of rpoB mutations in Mycobacterium tuberculosis and description of new mutations conferring weak resistance to rifampicin.

Yolande Hauck , Michel Fabre , Gilles Vergnaud , Charles Soler , Christine Pourcel
Journal of Antimicrobial Chemotherapy, 2009, epub ahead of print. ⟨10.1093/jac/dkp204⟩
Article dans une revue hal-00397748v1

CRISPRcompar: a website to compare clustered regularly interspaced short palindromic repeats.

Ibtissem Grissa , Gilles Vergnaud , Christine Pourcel
Nucleic Acids Research, 2008, 36 (Web Server issue), pp.W145-8. ⟨10.1093/nar/gkn228⟩
Article dans une revue hal-00297231v1

High resolution typing of Chlamydophila psittaci by multilocus VNTR analysis (MLVA).

Karine Laroucau , Simon Thierry , Fabien Vorimore , Kinndle Blanco , Erhard Kaleta
Infection, Genetics and Evolution, 2008, 8 (2), pp.171-81. ⟨10.1016/j.meegid.2007.12.002⟩
Article dans une revue hal-00241850v1

Insight into microevolution of Yersinia pestis by clustered regularly interspaced short palindromic repeats.

Yujun Cui , Yanjun Li , Olivier Gorgé , Mikhail E Platonov , Yanfeng Yan
PLoS ONE, 2008, 3 (7), pp.e2652. ⟨10.1371/journal.pone.0002652⟩
Article dans une revue hal-00297130v1

The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats.

Ibtissem Grissa , Gilles Vergnaud , Christine Pourcel
BMC Bioinformatics, 2007, 8, pp.172. ⟨10.1186/1471-2105-8-172⟩
Article dans une revue hal-00194456v1

On-line resources for bacterial micro-evolution studies using MLVA or CRISPR typing.

Ibtissem Grissa , Patrick Bouchon , Christine Pourcel , Gilles Vergnaud
Biochimie, 2007, epub ahead of print. ⟨10.1016/j.biochi.2007.07.014⟩
Article dans une revue hal-00195167v1

Multiple-locus variable-number tandem-repeat analysis for longitudinal survey of sources of Pseudomonas aeruginosa infection in cystic fibrosis patients.

Hoang Vu-Thien , Gaëlle Corbineau , Katia Hormigos , Brigitte Fauroux , Harriet Corvol
Journal of Clinical Microbiology, 2007, 45 (10), pp.3175-83. ⟨10.1128/JCM.00702-07⟩
Article dans une revue hal-00192548v1

CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats.

Ibtissem Grissa , Gilles Vergnaud , Christine Pourcel
Nucleic Acids Research, 2007, 35 (Web Server issue), pp.W52-7. ⟨10.1093/nar/gkm360⟩
Article dans une revue hal-00194414v1

Identification of variable-number tandem-repeat (VNTR) sequences in Legionella pneumophila and development of an optimized multiple-locus VNTR analysis typing scheme.

Christine Pourcel , Paolo Visca , Baharak Afshar , Silvia d'Arezzo , Gilles Vergnaud
Journal of Clinical Microbiology, 2007, 45 (4), pp.1190-9. ⟨10.1128/JCM.02078-06⟩
Article dans une revue hal-00195326v1

Analysis of the three Yersinia pestis CRISPR loci provides new tools for phylogenetic studies and possibly for the investigation of ancient DNA.

Gilles Vergnaud , Yanjun Li , Olivier Gorgé , Yujun Cui , Yajun Song
Advances in Experimental Medicine and Biology, 2007, 603, pp.327-38
Article dans une revue hal-00195235v1
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High genetic diversity revealed by variable-number tandem repeat genotyping and analysis of hsp65 gene polymorphism in a large collection of "Mycobacterium canettii" strains indicates that the M. tuberculosis complex is a recently emerged clone of "M. canettii".

Michel Fabre , Jean-Louis Koeck , Philippe Le Flèche , Fabrice Simon , Vincent Hervé
Journal of Clinical Microbiology, 2004, 42 (7), pp.3248-55. ⟨10.1128/JCM.42.7.3248-3255.2004⟩
Article dans une revue hal-01158318v1