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Gregoire Malandain

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Embryo-scale epithelial buckling forms a propagating furrow that initiates gastrulation

Julien Fierling , Alphy John , Barthélémy Delorme , Alexandre Torzynski , Guy B Blanchard
Nature Communications, 2022, 13 (1), pp.3348. ⟨10.1038/s41467-022-30493-3⟩
Journal articles hal-03737695v1
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A multiscale analysis of early flower development in Arabidopsis provides an integrated view of molecular regulation and growth control

Yassin Refahi , Argyris Zardilis , Gaël Michelin , Raymond Wightman , Bruno Leggio
Developmental Cell, 2021, 56 (4), pp.540-556.e8. ⟨10.1016/j.devcel.2021.01.019⟩
Journal articles hal-03299500v1

Contact area-dependent cell communication and the morphological invariance of ascidian embryogenesis

Léo Guignard , Ulla-Maj Fiuza , Bruno Leggio , Julien Laussu , Emmanuel Faure
Science, 2020, 369 (6500), pp.158. ⟨10.1126/science.aar5663⟩
Journal articles hal-02903409v1

In Toto Imaging and Reconstruction of Post-Implantation Mouse Development at the Single-Cell Level

Katie Mcdole , Léo Guignard , Fernando Amat , Andrew Berger , Grégoire Malandain
Cell, 2018, 175 (3), pp.859 - 876.e33. ⟨10.1016/j.cell.2018.09.031⟩
Journal articles hal-01900416v1

A stochastic framework to model axon interactions within growing neuronal populations

Agustina Razetti , Caroline Medioni , Grégoire Malandain , Florence Besse , Xavier Descombes
PLoS Computational Biology, 2018, 14 (12), pp.e1006627. ⟨10.1371/journal.pcbi.1006627⟩
Journal articles hal-01953244v1
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Planar cell polarity genes frizzled4 and frizzled6 exert patterning influence on arterial vessel morphogenesis

Rene Markovič , Julien Peltan , Marko Gosak , Denis Horvat , Borut Žalik
PLoS ONE, 2017, 12 (3), pp.e0171033. ⟨10.1371/journal.pone.0171033⟩
Journal articles inserm-02469561v1

Temporal epilepsy lesions may be detected by the voxel-based quantitative analysis of brain FDG-PET images using an original block-matching normalization software

Antoine Verger , Yalcin Yagdigul , Axel van Der Gucht , Sylvain Poussier , Eric Guedj
Annals of Nuclear Medicine, 2016, 30 (4), pp.272-278. ⟨10.1007/s12149-016-1060-4⟩
Journal articles hal-01419250v1

Age-related changes in FDG brain uptake are more accurately assessed when applying an adaptive template to the SPM method of voxel-based quantitative analysis

Axel van Der Gucht , Antoine Verger , Eric Guedj , Grégoire Malandain , Gabriela Hossu
Annals of Nuclear Medicine, 2015, 29 (10), pp.921-928. ⟨10.1007/s12149-015-1022-2⟩
Journal articles hal-01245045v1
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A tree-topology preserving pairing for 3D/2D registration

Thomas Benseghir , Grégoire Malandain , Régis Vaillant
International Journal of Computer Assisted Radiology and Surgery, 2015, 10 (6), pp.913-923. ⟨10.1007/s11548-015-1207-0⟩
Journal articles hal-01183573v1
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Assessing the ability of the 2D Fisher-KPP equation to model cell-sheet wound closure

Abderrahmane Habbal , Hélène Barelli , Grégoire Malandain
Mathematical Biosciences, 2014, 252, pp.45-59
Journal articles hal-00923588v1
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Amplitude-based data selection for optimal retrospective reconstruction in micro-SPECT

Marine Breuilly , Grégoire Malandain , Julien Guglielmi , Robert Marsault , Thierry Pourcher
Physics in Medicine and Biology, 2013, 58 (8), pp.2657-2674. ⟨10.1088/0031-9155/58/8/2657⟩
Journal articles hal-00799381v1

Voxel-based quantitative analysis of brain images from F-18 Fluorodeoxyglucose Positron Emission Tomography with a Block-Matching algorithm for spatial normalization

Christophe Person , Valérie Louis-Dorr , Sylvain Poussier , Olivier Commowick , Grégoire Malandain
Clinical Nuclear Medicine, 2012, 37 (3), pp.268-273. ⟨10.1097/RLU.0b013e3182443b2d⟩
Journal articles hal-00651731v1

Radiotherapy and radiology: joint efforts for modern radiation planning and practice

Juliette Thariat , Pierre-Yves Marcy , A. Lacout , Liliane Ramus , T. Girinsky
Diagnostic and Interventional Imaging, 2012, 93 (5), pp.342-350. ⟨10.1016/j.diii.2012.02.004⟩
Journal articles hal-00813871v1
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Vers un patient numérique personnalisé pour le diagnostic et la thérapie guidés par l'image [Towards a personalized digital patient for diagnosis and therapy guided by image].

Nicholas Ayache , Olivier Clatz , Hervé Delingette , Grégoire Malandain , Xavier Pennec
Médecine/Sciences, 2011, 27 (2), pp.208-13. ⟨10.1051/medsci/2011272208⟩
Journal articles inria-00616192v1

DENTALMAPS: Automatic Dental Delineation for Radiotherapy Planning in Head and Neck Cancer

Juliette Thariat , Liliane Ramus , Philippe Maingon , Guillaume Odin , Vincent Grégoire
International Journal of Radiation Oncology, Biology, Physics, 2011, 82 (5), pp.1858-1865
Journal articles inria-00616186v1
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Evaluation of registration methods on thoracic CT: the EMPIRE10 challenge.

Keelin Murphy , Bram van Ginneken , Joseph M. Reinhardt , Sven Kabus , Kai Ding
IEEE Transactions on Medical Imaging, 2011, 30 (11), pp.1901-20. ⟨10.1109/TMI.2011.2158349⟩
Journal articles inserm-00607794v1

Les mathématiques cachées de la médecine

Grégoire Malandain
Interstices, 2010
Journal articles hal-01350310v1

[Longitudinal study of health related quality of life in multiple sclerosis: correlation with MRI parameters]

M. Cohen , C. Lebrun , D Aufauvre , S. Chanalet , C Filleau-Bertogliatti
Revue Neurologique, 2010, 166 (11), pp.894-900
Journal articles hal-00813767v1

Outils de contourage, utilisation et construction d'atlas anatomiques : exemples des cancers de la tete et du cou

Liliane Ramus , Juliette Thariat , Pierre-Yves Marcy , Yoann Pointreau , Guillaume Bera
Cancer/Radiothérapie, 2010, 14 (3), pp.206-12
Journal articles inria-00616098v1

Imaging plant growth in 4D : robust tissue reconstruction and lineaging at cell resolution.

R. Fernandez , Pradeep Das , V. Mirabet , E. Moscardi , Jan Traas
Nature Methods, 2010, 7, pp.547-553. ⟨10.1038/NMETH.1472⟩
Journal articles hal-00521491v1

A pre-clinical assessment of an atlas-based automatic segmentation tool for the head and neck

Richard Sims , Aurélie Isambert , Vincent Grégoire , François Bidault , Lydia Fresco
Radiotherapy & Oncology, 2009, 93 (3), pp.474-8
Journal articles inria-00616090v1

Revue des approches de segmentation des lésions de sclérose en plaques dans les séquences conventionnelles IRM

Jean-Christophe Souplet , Christine Lebrun , Stéphane Chanalet , Nicholas Ayache , Grégoire Malandain
Revue Neurologique, 2009, 165 (1), pp.7--14
Journal articles inria-00616091v1

A three-dimensional histological atlas of the human basal ganglia. II. Atlas deformation strategy and evaluation in deep brain stimulation for Parkinson disease.

Eric Bardinet , Manik Bhattacharjee , Didier Dormont , Bernard Pidoux , Grégoire Malandain
Journal of Neurosurgery, 2009, 110 (2), pp.208-19
Journal articles inria-00616085v1

An efficient locally affine framework for the smooth registration of anatomical structures

Olivier Commowick , Vincent Arsigny , Aurélie Isambert , Jimena Costa , Frédéric Dhermain
Medical Image Analysis, 2008, 12 (4), pp.427-41. ⟨10.1016/j.media.2008.01.002⟩
Journal articles inria-00616074v1

A phantom study of the accuracy of CT, MR and PET image registrations with a block matching-based algorithm

Aurélie Isambert , Guillaume Bonniaud , F. Lavielle , Grégoire Malandain , Dimitri Lefkopoulos
Cancer/Radiothérapie, 2008, 12 (8), pp.800-8. ⟨10.1016/j.canrad.2008.04.009⟩
Journal articles inria-00616066v1

Atlas-Based Delineation of Lymph Node Levels in Head and Neck Computed Tomography Images

Olivier Commowick , Vincent Grégoire , Grégoire Malandain
Radiotherapy & Oncology, 2008, 87 (2), pp.281-289
Journal articles inria-00616080v1

Evaluation of an atlas-based automatic segmentation software for the delineation of brain organs at risk in a radiation therapy clinical context

Aurélie Isambert , Frédéric Dhermain , F. Bidault , Olivier Commowick , Pierre-Yves Bondiau
Radiotherapy & Oncology, 2008, 87 (1), pp.93-9. ⟨10.1016/j.radonc.2007.11.030⟩
Journal articles inria-00616079v1

A three-dimensional, histological and deformable atlas of the human basal ganglia. I. Atlas construction based on immunohistochemical and MRI data

Jérôme Yelnik , Eric Bardinet , Didier Dormont , Grégoire Malandain , Sébastien Ourselin
NeuroImage, 2007, 34 (2), pp.618-38
Journal articles inria-00616029v1

Model-based respiratory motion compensation for emission tomography image reconstruction

Mauricio Antonio Reyes Aguirre , Grégoire Malandain , Pierre Malick Koulibaly , Miguel Ángel González Ballester , Jacques Darcourt
Physics in Medicine and Biology, 2007, 52 (12), pp.3579-600
Journal articles inria-00616030v1

Blockwise processing applied to brain microvascular network study

Céline Fouard , Grégoire Malandain , Steffen Prohaska , Malte Westerhoff
IEEE Transactions on Medical Imaging, 2006, 25 (10), pp.1319 - 1328. ⟨10.1109/TMI.2006.880670⟩
Journal articles hal-00308887v1
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Robust Mosaicing with Correction of Motion Distortions and Tissue Deformation for In Vivo Fibered Microscopy

Tom Vercauteren , Aymeric Perchant , Grégoire Malandain , Xavier Pennec , Nicholas Ayache
Medical Image Analysis, 2006, 10 (5), pp.673--692. ⟨10.1016/j.media.2006.06.006⟩
Journal articles inria-00163961v1

Early detection of cognitive impairment in relapsing-remitting multiple sclerosis: functional-anatomical correlations and longitudinal follow-up

Caroline Bensa , Christelle Bertogliati , Stéphane Chanalet , Grégoire Malandain , P. Bedoucha
Revue Neurologique, 2006, 162 (12), pp.1221
Journal articles inria-00615002v1
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A low temperature embedding and section registration strategy for 3D image reconstruction of the rat brain from autoradiographic sections.

Arjan W. Simonetti , Vedat A. Elezi , Régine Farion , Grégoire Malandain , Christoph Segebarth
Journal of Neuroscience Methods, 2006, 158 (2), pp.242-50. ⟨10.1016/j.jneumeth.2006.06.004⟩
Journal articles inserm-00388981v1
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Reconstruction of Coronary Arteries from a Single Rotational X-Ray Projection Sequence

Christophe Blondel , Grégoire Malandain , Régis Vaillant , Nicholas Ayache
IEEE Transactions on Medical Imaging, 2006, 25 (5), pp.653--663. ⟨10.1109/TMI.2006.873224⟩
Journal articles inria-00614993v1
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Piecewise Affine Registration of Biological Images for Volume Reconstruction

Alain Pitiot , Eric Bardinet , Paul Thompson , Grégoire Malandain
Medical Image Analysis, 2006, 10 (3), pp.465--483
Journal articles inria-00614996v1

Realistic Simulation of the 3D Growth of Brain Tumors in MR Images Coupling Diffusion with Mass Effect

Olivier Clatz , Maxime Sermesant , Pierre-Yves Bondiau , Hervé Delingette , Simon K. K. Warfield
IEEE Transactions on Medical Imaging, 2005, 24 (10), pp.1334-1346
Journal articles inria-00615662v1

La tomographie en mouvement

Grégoire Malandain , Mauricio Antonio Reyes Aguirre
Pour la science, 2005, 338, pp.132--137
Journal articles inria-00615669v1

Atlas-based automatic segmentation of MR images: validation study on the brainstem in radiotherapy context

Pierre-Yves Bondiau , Grégoire Malandain , Stéphane Chanalet , Pierre-Yves Marcy , Jean-Louis Habrand
International Journal of Radiation Oncology, Biology, Physics, 2005, 61 (1), pp.289-98. ⟨10.1016/j.ijrobp.2004.08.055⟩
Journal articles inria-00615664v1

From arteriographies to computational flow in saccular aneurisms: the INRIA experience

Marc Thiriet , J.-D. Boissonnat , R. Chaine , P. Frey , Grégoire Malandain
Medical Image Analysis, 2005, 9 (2), pp.133-143
Journal articles hal-00017614v1

3-D tomographic reconstruction of coronary arteries using a precomputed 4-D motion field

Christophe Blondel , Régis Vaillant , Grégoire Malandain , Nicholas Ayache
Physics in Medicine and Biology, 2004, 49 (11), pp.2197--2208. ⟨10.1088/0031-9155/49/11/006⟩
Journal articles inria-00615654v1

The use of superresolution techniques to reduce slice thickness in functional MRI

R.R. Peeters , Pierre Kornprobst , M. Nikolova , S. Sunaert , Thierry Viéville
International Journal of Imaging Systems and Technology, 2004, 14 (3), pp.131--138. ⟨10.1002/ima.20016⟩
Journal articles inria-00615643v1

Traitement des images et radiothérapie

Pierre-Yves Bondiau , Grégoire Malandain , Stéphane Chanalet , Pierre-Yves Marcy , C. Foa
Cancer/Radiothérapie, 2004, 8 (2), pp.120--129
Journal articles inria-00615641v1

3-D chamfer distances and norms in anisotropic grids

Céline Fouard , Grégoire Malandain
Image and Vision Computing, 2004, 23 (2), pp.143-158. ⟨10.1016/j.imavis.2004.06.009⟩
Journal articles hal-00308886v1

The contribution of automatic anatomical matching of sequential brain MRI scans in the monitoring of multiple sclerosis lesions

Christine Lebrun , David Rey , Stéphane Chanalet , Véronique Bourg , Caroline Bensa
Revue Neurologique, 2004, 160 (8-9), pp.805-10
Journal articles inria-00615655v1

Fusion of autoradiographs with an MR volume using 2-D and 3-D linear transformations

Grégoire Malandain , Eric Bardinet , Koen Nelissen , Wim Vanduffel
NeuroImage, 2004, 23 (1), pp.111--127. ⟨10.1016/j.neuroimage.2004.04.038⟩
Journal articles inria-00615651v1
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Anisotropic Filtering for Model Based Segmentation of 4D Cylindrical Echocardiographic Images

Johan Montagnat , Maxime Sermesant , Hervé Delingette , Grégoire Malandain , Nicholas Ayache
Pattern Recognition Letters, 2003, 24 (4-5), pp.815-828. ⟨10.1016/S0167-8655(02)00184-8⟩
Journal articles inria-00615640v2

Retrospective evaluation of intersubject brain registration

Pierre Hellier , Christian Barillot , Isabelle Corouge , Bernard Gibaud , G. Le Goualher
IEEE Transactions on Medical Imaging, 2003, 22 (9), pp.1120 - 1130. ⟨10.1109/TMI.2003.816961⟩
Journal articles inria-00536383v1

Automatic three-dimensional model for protontherapy of the eye: Preliminary results

Pierre-Yves Bondiau , Grégoire Malandain , Pierre Chauvel , Frédérique Peyrade , Adel Courdi
Medical Physics, 2003, 30 (6), pp.1013-1020
Journal articles inria-00615638v1
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Computing the Diameter of a Point Set

Grégoire Malandain , Jean-Daniel Boissonnat
International Journal of Computational Geometry and Applications, 2002, 12 (6), pp.489--510
Journal articles inria-00615026v1
Image document

Fully automatic anatomical, pathological, and functional segmentation from CT scans for hepatic surgery

Luc Soler , Hervé Delingette , Grégoire Malandain , Johan Montagnat , Nicholas Ayache
Computer Aided Surgery, 2001, 6 (3), pp.131-42
Journal articles inria-00615108v1

Perfusion brain SPECT and Statistical Parametric Mapping analysis indicate that apathy is a cingulate syndrome: a study in Alzheimer's disease and non-demented patients

Octave Migneco , M. Benoit , Pierre Malick Koulibaly , I. Dygai , Christelle Bertogliati
NeuroImage, 2001, 13 (5), pp.896--902. ⟨10.1006/nimg.2000.0741⟩
Journal articles inria-00615625v1

Rigid registration of 3-D ultrasound with MR images: a new approach combining intensity and gradient information.

Alexis Roche , Xavier Pennec , Grégoire Malandain , Nicholas Ayache
IEEE Transactions on Medical Imaging, 2001, 20 (10), pp.1038-49. ⟨10.1109/42.959301⟩
Journal articles cea-00333699v1

Unifying maximum likelihood approaches in medical image registration

Alexis Roche , Grégoire Malandain , Nicholas Ayache
International Journal of Imaging Systems and Technology, 2000, 11 (1), pp.71-80
Journal articles cea-00333642v1
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Model-Based Detection of Tubular Structures in 3D Images

Karl Krissian , Grégoire Malandain , Nicholas Ayache , Régis Vaillant , Yves Trousset
Computer Vision and Image Understanding, 2000, 80 (2), pp.130--171
Journal articles inria-00615029v1
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An automatic virtual patient reconstruction from CT-scans for hepatic surgical planning

Luc Soler , Hervé Delingette , Grégoire Malandain , Nicholas Ayache , Christophe Koehl
Studies in Health Technology and Informatics, 2000, 70, pp.316-22
Journal articles inria-00615103v1

Fast Binary Image Processing Using Binary Decision Diagrams

Luc Robert , Grégoire Malandain
Computer Vision and Image Understanding, 1998, 72 (1), pp.1--9
Journal articles inria-00615038v1

Segmentation automatique : application aux angioscanners 3D du foie

Luc Soler , Grégoire Malandain , Hervé Delingette
Traitement du Signal, 1998, 15 (5), pp.411-431
Journal articles inria-00615033v1

Euclidean Skeletons

Grégoire Malandain , Sara Fernández-Vidal
Image and Vision Computing, 1998, 16 (5), pp.317--327
Journal articles inria-00615037v1
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Extension of the ICP Algorithm to Nonrigid Intensity-Based Registration of 3D Volumes

Jacques Feldmar , Jérôme Declerck , Grégoire Malandain , Nicholas Ayache
Computer Vision and Image Understanding, 1997, 66 (2), pp.193--206. ⟨10.1006/cviu.1997.0606⟩
Journal articles inria-00615066v1

X-ray angiography in stereotactic conditions: techniques and interest for interventional neuroradiology

L. Picard , Eric Maurincomme , M. Soderman , Jacques Feldmar , René Anxionnat
Stereotactic and Functional Neurosurgery, 1997, 68 (1-4 Pt 1), pp.117-20. ⟨10.1159/000099912⟩
Journal articles inria-00615078v1

Clinical and technical requirements for proton treatment planning of ocular diseases. The SERAG (South Europe Radiotherapy Group)

Pierre Chauvel , W. Sauerwein , N. Bornfeld , W. Friedrichs , N. Brassart
Frontiers of Radiation Therapy and Oncology, 1997, 30, pp.133-42
Journal articles inria-00615067v1

Comparison and evaluation of retrospective intermodality brain image registration techniques

J. West , J.M. Fitzpatrick , M.Y. Wang , B.M. Dawant , C.R. Maurer
Journal of Computer Assisted Tomography, 1997, 21 (4), pp.554-566
Journal articles inria-00615072v1

A note on ''Building skeleton models via 3D medial surface-axis thinning algorithms''

Gilles Bertrand , Grégoire Malandain
Graphical Models and Image Processing, 1995, 57 (6), pp.537--538
Journal articles inria-00615053v1

A note on "Building skeleton models via 3-D medial surface/axis thinning algorithms"

Gilles Bertrand , Grégoire Malandain
Graphical Models and Image Processing, 1995, 57 (6), pp.537-538
Journal articles hal-00622007v1

Mise en correspondance d'objets 3D par une approche mécanique : application aux images médicales multimodales

Grégoire Malandain , Sara Fernández-Vidal , Jean-Marie Rocchisani
Traitement du Signal, 1994, 11 (6), pp.541--558
Journal articles inria-00615052v1

A new characterization of three-dimensional simple points

Gilles Bertrand , Grégoire Malandain
Pattern Recognition Letters, 1994, 15 (2), pp.169--175
Journal articles inria-00615050v1
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Topological segmentation of discrete surfaces

Grégoire Malandain , Gilles Bertrand , Nicholas Ayache
International Journal of Computer Vision, 1993, 10 (2), pp.183-197. ⟨10.1007/BF01420736⟩
Journal articles inria-00615046v1

Topological segmentation of discrete surfaces

Grégoire Malandain , Gilles Bertrand , Nicholas Ayache
International Journal of Computer Vision, 1993, 10 2 (1), pp.183-197
Journal articles hal-00622102v1

Recursive filtering and edge tracking: two primary tools for 3-D edge detection

Olivier Monga , Rachid Deriche , Grégoire Malandain , Jean-Pierre Cocquerez
Image and Vision Computing, 1991, 9 (4), pp.203--214. ⟨10.1016/0262-8856(91)90025-K⟩
Journal articles inria-00615536v1

Automatic multidimensional segmentation of nuclear medicine images using fast recursive filters

Jean-Marie Rocchisani , Olivier Monga , Rachid Deriche , Grégoire Malandain
European Journal of Nuclear Medicine, 1990, 16, pp.419
Journal articles inria-00615535v1
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Detecting symmetry in ascidian embryo

Grégoire Malandain , Patrick Lemaire
ISBI 2024 - 21th International Symposium on Biomedical Imaging, May 2024, Athenes, Greece. pp.4
Conference papers hal-04609482v1
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A 4D quantification pipeline to characterize plant cell wall enzymatic hydrolysis in highly deconstructed samples

Solmaz Hossein Khani , Khadidja Ould Amer , Noah Remy , Anouck Habrant , Berangère Lebas
RFP 2024 - 14èmes journées du Réseau Français des Parois, Aug 2024, Saint Malo, France, France
Conference papers hal-04731379v1

Robust Plant Cell Tracking in Fluorescence Microscopy 3D+T Series

Manuel Petit , Guillaume Cerutti , Christophe Godin , Grégoire Malandain
ISBI 2022 - IEEE 19th International Symposium on Biomedical Imaging, Mar 2022, Kolkata, India. pp.1-4, ⟨10.1109/ISBI52829.2022.9761521⟩
Conference papers hal-03683119v1
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3D Coronary Vessel Tree Tracking in X-Ray Projections

Emmanuelle Poulain , Grégoire Malandain , Régis Vaillant
FIMH 2019 - 10th Functional Imaging and Modeling of the Heart, Jun 2019, Bordeaux, France. pp.388-396, ⟨10.1007/978-3-030-21949-9_42⟩
Conference papers hal-02153710v1
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Intensity-based matching and registration for 3D correlative microscopy with large discrepancies

Bertha Mayela Toledo Acosta , Xavier Heiligenstein , Grégoire Malandain , Patrick Bouthemy
ISBI 2018 - IEEE 15th International Symposium on Biomedical Imaging, Apr 2018, Washington, United States. pp.493-496, ⟨10.1109/ISBI.2018.8363623⟩
Conference papers hal-01930740v1
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Suivi temporel 3D de vaisseaux coronaires dans les projections rayons X

Emmanuelle Poulain , Grégoire Malandain , Régis Vaillant
GRETSI, Sep 2017, Juan-Les-Pins, France
Conference papers hal-01544989v1
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Coherent temporal extrapolation of labeled images

Grégoire Malandain , Gaël Michelin
ISBI 2017 - International Symposium on Biomedical Imaging, Apr 2017, Melbourne, Australia. pp.433 - 436, ⟨10.1109/ISBI.2017.7950554⟩
Conference papers hal-01574698v1
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Modeling collective axon growth from in vivo data reveals the importance of physical axon-axon interactions

Agustina Razetti , Caroline Medioni , Grégoire Malandain , Florence Besse , Xavier Descombes
Cell biology of the neuron: Polarity, plasticity and regeneration, EMBO, May 2017, Heraklion, Greece
Conference papers hal-01483505v1
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3D Coronary vessel tracking in x-ray projections

Emmanuelle Poulain , Grégoire Malandain , Régis Vaillant
International Conference on Functional Imaging and Modeling of the Heart (FIMH), Jun 2017, Toronto, Canada. pp.204-215, ⟨10.1007/978-3-319-59448-4_20⟩
Conference papers hal-01502128v1

Modelling collective axon growth from in vivo data reveals the importance of physical axon-axon interactions

Agustina Razetti , Caroline Medioni , Grégoire Malandain , Florence Besse , Xavier Descombes
Rencontre C@UCA 2017, Jun 2017, Fréjus, France
Conference papers hal-01643226v1
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Spatio-temporal registration of 3D microscopy image sequences of Arabidopsis floral meristems

Gaël Michelin , Yassin Refahi , Raymond Wightman , Henrik Jönsson , Jan J. Traas
ISBI - International Symposium on Biomedical Imaging, Apr 2016, Prague, Czech Republic. pp.4, ⟨10.1109/ISBI.2015.7163872⟩
Conference papers hal-01606687v2
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Quantitative comparison of micro-vasculatures

Manon Linder , Cecile Duplaa , Thierry Couffinhal , Grégoire Malandain
ISBI 2015 - International Symposium on Biomedical Imaging, Apr 2015, Brooklyn, United States
Conference papers hal-01145908v1
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Cell Pairings for Ascidian Embryo Registration

Gaël Michelin , Léo Guignard , Ulla-Maj Fiuza , Patrick Lemaire , Christophe Godin
ISBI - International Symposium on Biomedical Imaging, Institute of Electrical and Electronics Engineers (IEEE). USA., Apr 2015, New York, United States. ⟨10.1109/ISBI.2015.7163872⟩
Conference papers hal-01113166v1
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A framework for creating population specific multimodal brain atlas using clinical T1 and diffusion tensor images

Vikash Gupta , Grégoire Malandain , Nicholas Ayache , Xavier Pennec
MICCAI 2015 Workshop on Computational Diffusion MRI (CDMRI'15), Oct 2015, Munich, Germany. pp.99-108, ⟨10.1007/978-3-319-28588-7_9⟩
Conference papers hal-01261115v1
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Motion compensation in two-photon microscopy temporal series

Caroline Medioni , Florence Besse , Xavier Descombes , Grégoire Malandain
International Symposium on Biomedical Imaging (ISBI), Apr 2015, Brooklyn, United States. pp.4, ⟨10.1109/ISBI.2015.7164182⟩
Conference papers hal-01311755v1
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Head Tracking and Flagellum Tracing for Sperm Motility Analysis

Huei-Fang Yang , Xavier Descombes , Sylvain Prigent , Grégoire Malandain , Xavier Druart
ISBI - International Symposium on Biomedical Imaging, Apr 2014, Beijing, China. ⟨10.1109/ISBI.2014.6867871⟩
Conference papers hal-00909868v2
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Embryo Cell Membranes Reconstruction by Tensor Voting

Gaël Michelin , Léo Guignard , Ulla-Maj Fiuza , Grégoire Malandain
ISBI - International Symposium on Biomedical Imaging, Apr 2014, Beijing, China. ⟨10.1109/ISBI.2014.6868105⟩
Conference papers hal-00915000v2
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A Recursive Approach For Multiclass Support Vector Machine: Application to Automatic Classification of Endomicroscopic Videos

Alexis Zubiolo , Barbara André , Eric Debreuve , Grégoire Malandain
VISAPP - International Conference on Computer Vision Theory and Applications, Jan 2014, Lisbon, Portugal
Conference papers hal-00905382v1
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Spatio-temporal registration of embryo images

Léo Guignard , Christophe Godin , Ulla-Maj Fiuza , Lars Hufnagel , Patrick Lemaire
ISBI - International Symposium on Biomedical Imaging, Apr 2014, Pekin, China
Conference papers hal-00919142v1
Image document

Automatic dendrite spines detection from X-ray tomography volumes

Xavier Descombes , Grégoire Malandain , Caroline Fonta , Lazlo Negyessy , Rajmund Mosko
ISBI - International Symposium on Biomedical Imaging, Apr 2013, San fancisco, United States. ⟨10.1109/ISBI.2013.6556505⟩
Conference papers hal-00793573v1

Mechanical properties of the plasma membrane of micropatterned cells incubated with mono or polyunsaturated fatty acids

Hélène Barelli , M. Pinot , Thierry Ferreira , Grégoire Malandain , Xavier Descombes
American Society for Cell Biology (ASCB) Annual Meeting, Dec 2013, New Orleans, United States
Conference papers hal-00909849v1
Image document

Image-based motion detection in 4D images and application to respiratory motion suppression

Marine Breuilly , Grégoire Malandain , Nicholas Ayache , Julien Guglielmi , Thierry Pourcher
ISBI - International Symposium on Biomedical Imaging, Apr 2013, San Francisco, United States. pp.792-795, ⟨10.1109/ISBI.2013.6556597⟩
Conference papers hal-00799368v1
Image document

Iterative Closest Curve: a Framework for Curvilinear Structure Registration Application to 2D/3D Coronary Arteries Registration

Thomas Benseghir , Grégoire Malandain , Régis Vaillant
MICCAI - Medical Image Computing and Computer Assisted Intervention, Sep 2013, Nagoya, Japan. pp.179-186, ⟨10.1007/978-3-642-40811-3_23⟩
Conference papers hal-00833196v1

Modeling cell sheet wound closure

Abderrahmane Habbal , Hélène Barelli , Grégoire Malandain
Applied Mathematics, Modeling and Computational Science (AMMCS), Wilfrid Laurier University with AIMS and SIAM, Aug 2013, Waterloo, Ontario, Canada
Conference papers hal-00923626v1

Prise en compte du mouvement respiratoire du petit animal pour la reconstruction 3D TEMP synchronisée : application aux métastases péritonéales

Marine Breuilly , Grégoire Malandain , Jacques Darcourt , Thierry Pourcher , Philippe R. Franken
50ème Colloque de Médecine Nucléaire de Langue Française, Apr 2012, Montpellier, France. pp.188-189, ⟨10.1016/j.mednuc.2012.02.108⟩
Conference papers hal-00759954v1
Image document

Modeling Cell-Sheets Wound Closure

Abderrahmane Habbal , Hélène Barelli , Grégoire Malandain
3rd International Conference of the Moroccan Society of Applied Mathematics (SM2A), Sep 2012, Marrakesh, Morocco
Conference papers hal-00923616v1

Simulated breath-hold reconstruction in micro-SPECT: application to peritoneal metastases expressing NIS as reporter gene

Marine Breuilly , Grégoire Malandain , Nicholas Ayache , Jacques Darcourt , Thierry Pourcher
MIBO - second Molecular Imaging in Biology and Oncology workshop - 2012, Jan 2012, Nice, France
Conference papers hal-00759929v1

NeuroLOG: A framework for the sharing and reuse of distributed tools and data in neuroimaging

Michel Dojat , Mélanie Pélégrini-Issac , Farooq Ahmad , Christian Barillot , Bénédicte Batrancourt
Organization for Human Brain Mapping (HBM'11), Jun 2011, Quebec, Canada
Conference papers hal-00813796v1

A federated system for sharing and reuse of images and image processing tools in neuroimaging

Bernard Gibaud , Farooq Ahmad , Christian Barillot , Franck Michel , Bacem Wali
Computer Assisted Radiology and Surgery (CARS'11), Jun 2011, Berlin, Germany
Conference papers hal-00690921v1

Assessing Selection Methods in the Context of Multi-atlas Based Segmentation

Liliane Ramus , Grégoire Malandain
Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10), 2010, Rotterdam, The Netherlands, Netherlands
Conference papers inria-00616167v1
Image document

Construction of patient specific atlases from locally most similar anatomical pieces.

Liliane Ramus , Olivier Commowick , Grégoire Malandain
Med Image Comput Comput Assist Interv (MICCAI), Sep 2010, China. pp.155-162
Conference papers inserm-00550024v1
Image document

Diffeomorphic demons and the EMPIRE10 challenge

Vincent Garcia , Tom Vercauteren , Grégoire Malandain , Nicholas Ayache
Grand Challenges in Medical Image Analysis (MICCAI workshop), 2010, Beijing, China, China
Conference papers inria-00616149v1
Image document

A Robust and Efficient Block Matching Framework for Non Linear Registration of Thoracic CT Images

Vincent Garcia , Olivier Commowick , Grégoire Malandain
Grand Challenges in Medical Image Analysis (MICCAI workshop), 2010, Beijing, China, China. pp.1-10
Conference papers inria-00616148v1

Multi-atlas based segmentation: Application to the head and neck region for radiotherapy planning

Liliane Ramus , Grégoire Malandain
MICCAI Workshop Medical Image Analysis for the Clinic - A Grand Challenge, 2010, Beijing, China, China
Conference papers inria-00616150v1
Image document

Grid-wide neuroimaging data federation in the context of the NeuroLOG project.

Franck Michel , Alban Gaignard , Farooq Ahmad , Christian Barillot , Bénédicte Batrancourt
HealthGrid'10, Jun 2010, Paris, France. pp.112-123, ⟨10.3233/978-1-60750-583-9-112⟩
Conference papers inserm-00512799v1

Design and use of patient-specific atlases for radiotherapy planning of the head and neck region

Liliane Ramus , Souha Aouadi , Yoann Pointreau , Guillaume Bera , Yungan Tao
ESTRO - 29th European Society for Therapeutic Radiology and Oncology, Sep 2010, Barcelona, Spain
Conference papers hal-00813778v1
Image document

Using Frankenstein's Creature Paradigm to Build a Patient Specific Atlas

Olivier Commowick , Simon K. K. Warfield , Grégoire Malandain
Medical Image Computing and Computer-Assisted Intervention (MICCAI'09), Part II, 2009, London, UK, United States. pp.993--1000, ⟨10.1007/978-3-642-04271-3_120⟩
Conference papers inria-00616133v1

Using consensus measures for atlas construction

Liliane Ramus , Grégoire Malandain
Proceedings of the Sixth IEEE International Symposium on Biomedical Imaging 2009 (ISBI'09), 2009, Boston, MA, United States
Conference papers inria-00616142v1
Image document

An Automatic Segmentation of T2-FLAIR Multiple Sclerosis Lesions

Jean-Christophe Souplet , Christine Lebrun , Nicholas Ayache , Grégoire Malandain
MICCAI-Multiple Sclerosis Lesion Segmentation Challenge Workshop, 2008, New York, NY, USA, United States
Conference papers inria-00616119v1

Computational models of flow in cerebral aneurisms

Marc Thiriet , Serge Piperno , Grégoire Malandain , Pascal Frey , Jacques Bittoun
11th Conference of the European Society of Biomechanics, Aug 2008, Toulouse, France. pp.273-282, ⟨10.1145/1400751.1400788⟩
Conference papers inria-00615800v1

A New Evaluation Of The Brain Parenchymal Fraction: Application In Multiple Sclerosis Longitudinal Studies

Jean-Christophe Souplet , Christine Lebrun , Nicholas Ayache , Grégoire Malandain
Proceedings of the IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'08), 2008, Paris, France, France. pp.65-68
Conference papers inria-00616128v1

Efficient Selection of the Most Similar Image in a Database for Critical Structures Segmentation

Olivier Commowick , Grégoire Malandain
Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'07), Part II, 2007, Brisbane, Australia, Australia. pp.203--210
Conference papers inria-00616045v1

An Efficient Locally Affine Framework for the Registration of Anatomical Structures

Olivier Commowick , Vincent Arsigny , Jimena Costa , Nicholas Ayache , Grégoire Malandain
Proceedings of the Third IEEE International Symposium on Biomedical Imaging (ISBI 2006), 2006, Crystal Gateway Marriott, Arlington, Virginia, USA, United States. pp.478-481
Conference papers inria-00615606v1

Processing and Mosaicing of Fibered Confocal Images

Nicholas Ayache , Tom Vercauteren , Grégoire Malandain , Fabien Oberrietter , Nicolas Savoire
MICCAI Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB'06), 2006, no address, Denmark
Conference papers inria-00615589v1

Evaluation of Atlas Construction Strategies in the Context of Radiotherapy Planning

Olivier Commowick , Grégoire Malandain
Proceedings of the SA2PM Workshop (From Statistical Atlases to Personalized Models), 2006, Copenhagen, Denmark
Conference papers inria-00615605v1

Respiratory Motion Correction in Emission Tomography Image Reconstruction

Mauricio Antonio Reyes Aguirre , Grégoire Malandain , Pierre Malick Koulibaly , Miguel Ángel González Ballester , Jacques Darcourt
Proceedings of MICCAI'05, Part II, 2005, Palm Springs, California, United States. pp.369--376, ⟨10.1007/1156648946⟩
Conference papers inria-00616009v1

Respiratory Motion Correction in Emission Tomography Imaging

Mauricio Antonio Reyes Aguirre , Grégoire Malandain , Jacques Darcourt , Pierre Malick Koulibaly
Fully Three-Dimensional Image Reconstruction Meeting in Radiology and Nuclear Medicine, 2005, Salt Lake City, Utah, USA, United States
Conference papers inria-00615995v1

Tree Matching Applied to Vascular System

Arnaud Charnoz , Vincent Agnus , Grégoire Malandain , Luc Soler , Mohamed Tajine
Graph-Based Representations in Pattern Recognition, 2005, no address, France. pp.183--192, ⟨10.1007/b107037⟩
Conference papers inria-00615996v1

Vascular system matching validated on the liver

Arnaud Charnoz , Vincent Agnus , Grégoire Malandain , Luc Soler , Mohamed Tajine
Information Processing in Medical Imaging 2005 (IPMI'05), 2005, Glenwood springs, Colorado, USA, United States. pp.443--455, ⟨10.1007/11505730_37⟩
Conference papers inria-00616002v1

Retrospective cross-evaluation of an histological and deformable 3D atlas of the basal ganglia on series of Parkinsonian patients treated by deep brain stimulation (DBS)

Eric Bardinet , Didier Dormont , Grégoire Malandain , Manik Bhattacharjee , Bernard Pidoux
Proceedings of MICCAI'05, 2005, Palm Springs, California, United States. pp.385--393, ⟨10.1007/1156648948⟩
Conference papers inria-00616005v1

Liver registration for the follow-up of hepatic tumors

Arnaud Charnoz , Vincent Agnus , Grégoire Malandain , Clément Forest , Mohamed Tajine
Proceedings of MICCAI'05, 2005, Palm Springs, California, United States. pp.155--162, ⟨10.1007/1156648920⟩
Conference papers inria-00616006v1

Non-Linear 2D and 3D Registration Using Block-Matching and B-Splines

Heike Hufnagel , Xavier Pennec , Grégoire Malandain , Hans Handels , Nicholas Ayache
Bildverarbeitung fuer die Medizin 2005, Deutsches Krebsforschungszentrum, 2005, Heidelberg, Germany, Germany. pp.325-329, ⟨10.1007/3-540-26431-0_67⟩
Conference papers inria-00615991v1

Incorporating statistical measures of anatomical variability in atlas-to-subject registration for conformal brain radiotherapy.

Olivier Commowick , Radu Stefanescu , Pierre Fillard , Vincent Arsigny , Nicholas Ayache
Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Oct 2005, Palm Springs, CA, United States. pp.927-34, ⟨10.1007/11566489_114⟩
Conference papers inria-00502673v1

Squelettisation par blocs pour des grands volumes de données 3D: application à la microcirculation cérébrale

Céline Fouard , Grégoire Malandain , Stefen Prohaska , Malte Westerhoff , Francis Cassot
Proc. of RFIA'04, 2004, Toulouse, France, France
Conference papers inria-00615983v1
Image document

Non-Rigid Atlas to Subject Registration with Pathologies for Conformal Brain Radiotherapy

Radu Stefanescu , Olivier Commowick , Grégoire Malandain , Pierre-Yves Bondiau , Nicholas Ayache
MICCAI 2004 - 7th International Conference on Medical Image Computing and Computer-Assisted Intervention, Sep 2004, Saint-Malo, France. pp.704-711, ⟨10.1007/978-3-540-30135-6_86⟩
Conference papers hal-03989487v1

Measuring Blood Cells Velocity In Microvessels From a Single Image: Application To In Vivo and In Situ Confocal Microscopy

Nicolas Savoire , Georges Le Goualher , Aymeric Perchant , François Lacombe , Grégoire Malandain
Proc. ISBI'04, 2004, Arlington (USA), United States. pp.456--459
Conference papers inria-00615976v1

Skeletonization by blocks for large datasets: application to brain microcirculation

Céline Fouard , Grégoire Malandain , Stefen Prohaska , Malte Westerhoff , Francis Cassot
International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'04), IEEE, 2004, Arlington, VA, USA, United States
Conference papers inria-00615970v1

Automatic Classification of SPECT Images of Alzheimer's Disease Patients and Control Subjects

Jonathan Stoeckel , Nicholas Ayache , Grégoire Malandain , Pierre Malick Koulibaly , Klaus P. Ebmeier
Proc. of MICCAI'04, 2004, Saint-Malo, France, France. pp.654--662
Conference papers inria-00615982v1

Hierarchical Segmentation of Multiple Sclerosis Lesions in Multi-Sequence MRI

Guillaume Dugas-Phocion , Miguel Ángel González Ballester , Christine Lebrun , Stéphane Chanalet , Caroline Bensa
International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'04), IEEE, 2004, Arlington, VA, USA, United States
Conference papers inria-00615969v1

In Silico Tumor Growth: Application to Glioblastomas

Olivier Clatz , Pierre Yves Bondiau , Hervé Delingette , Grégoire Malandain , Maxime Sermesant
Proc. of the 7th Int. Conf on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2004 (2), 2004, Saint-Malo, France, France. pp.337--345
Conference papers inria-00615984v1

3D tomographic reconstruction of coronary arteries using a precomputed 4D motion field

Christophe Blondel , Régis Vaillant , Grégoire Malandain , Nicholas Ayache
Proceedings of the VIIth International Conference on Fully 3D Reconstruction In Radiology and Nuclear Medicine, 2003, Saint-Malo, France, France
Conference papers inria-00615958v1
Image document

4-D Tomographic Representation of Coronary Arteries from One Rotational X-Ray Sequence

Christophe Blondel , Grégoire Malandain , Régis Vaillant , Frédéric Devernay , Ève Coste-Manière
Medical Image Computing and Computer-Assisted Intervention, Nov 2003, Montreal, Canada. ⟨10.1007/978-3-540-39899-8_52⟩
Conference papers inria-00262367v1
Image document

Systematized calculation of optimal coefficients of 3-D chamfer norms

Céline Fouard , Grégoire Malandain
Discrete Geometry for Computer Imagery, 2003, Napoli, Italy. pp.214--223, ⟨10.1007/b94107⟩
Conference papers hal-00308962v1

Intensity compensation within series of images

Grégoire Malandain , Eric Bardinet
Medical image computing and computer-assisted intervention (MICCAI 2003), 2003, Montreal, Canada, Canada. pp.41--49
Conference papers inria-00615950v1

Piecewise Affine Registration of Biological Images

Alain Pitiot , Grégoire Malandain , Eric Bardinet , Paul Thompson
Second International Workshop on Biomedical Image Registration WBIR'03, 2003, Philadelphia, PA, USA, United States. pp.91--101
Conference papers inria-00615673v1

4D deformation field of coronary arteries from monoplane rotational X-ray angiography

Christophe Blondel , Grégoire Malandain , Régis Vaillant , Nicholas Ayache
Computer Assisted Radiology and Surgery 2003 Proceedings, 2003, Londres, United Kingdom, United Kingdom. ⟨10.1016/S0531-5131(03)00256-5⟩
Conference papers inria-00615935v1

2D to 3D Refinement of Post Mortem Optical and MRI Co-Registration

C. Kenwright , Eric Bardinet , S.A. Hojjat , Grégoire Malandain , Nicholas Ayache
Medical image computing and computer-assisted intervention (MICCAI 2003), 2003, Montreal, Canada, Canada. pp.935--944
Conference papers inria-00615949v1

Delineation of the basal ganglia in MR images of patients by automatic registration of a multimodal atlas based on histological and MR data

Jérôme Yelnik , Eric Bardinet , Didier Dormont , Chantal François , Dominique Tandé
NeuroImage (HBM'03), 2003, New York, USA, United States
Conference papers inria-00615954v1

Fusion of autoradiographies with an MR volume using 2-D and 3-D linear transformations

Grégoire Malandain , Eric Bardinet
Proceedings of Information Processing in Medical Imaging (IPMI'03), 2003, no address, United Kingdom. pp.487--498
Conference papers inria-00615674v1
Image document

Automatic trinocular 3D reconstruction of coronary artery centerlines from rotational X-ray angiography

Christophe Blondel , Régis Vaillant , Frédéric Devernay , Grégoire Malandain , Nicholas Ayache
Computer Assisted Radiology Surgery, 2002, Paris, France
Conference papers inria-00262383v1

Three dimensional functional cartography of the human basal ganglia by registration of optical and histological serial sections

Eric Bardinet , Sébastien Ourselin , Grégoire Malandain , Dominique Tandé , Karine Parain
IEEE International Symposium on Biomedical Imaging, 2002, Washington, USA, United States. pp.329--332
Conference papers inria-00615915v1

Improved Detection Sensitivity in Functional MRI Data using a Brain Parcelling Technique

Guillaume Flandin , Ferath Kherif , Xavier Pennec , Grégoire Malandain , Nicholas Ayache
Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), 2002, Tokyo, Japan. pp.467--474, ⟨10.1007/3-540-45786-0_58⟩
Conference papers inria-00615921v1

Co-registration of histological, optical and MR data of the human brain

Eric Bardinet , Sébastien Ourselin , Didier Dormont , Grégoire Malandain , Dominique Tandé
Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), 2002, Tokyo, Japan. pp.548--555
Conference papers inria-00615920v1

From medical images to computational meshes

Jean-Daniel Boissonnat , Raphaelle Chaine , P. Frey , Grégoire Malandain , F. Nicoud
Conference on Modelling and Simulation for Computer-aided Medicine and Surgery (MS4CMS'02), 2002, no address, France. pp.1--7
Conference papers inria-00615907v1

Elaboration of a three-dimensional, functional and registrable atlas of the human basal ganglia

Jérôme Yelnik , Eric Bardinet , Didier Dormont , Chantal François , Dominique Tandé
3rd Forum of European Neuroscience, The Federation of European Neuroscience Societies (FENS), 2002, Paris, France
Conference papers inria-00615904v1

Computing the Diameter of a Point Set

Grégoire Malandain , Jean-Daniel Boissonnat
Discrete Geometry for Computer Imagery (DGCI 2002), 2002, Bordeaux, France, France
Conference papers inria-00615676v1

Evaluation of an automatic classifier for SPECT Alzheimer's disease diagnosis

Octave Migneco , Grégoire Malandain , Pierre Malick Koulibaly , Philippe Robert , Nicholas Ayache
European Association of Nuclear Medicine Meeting, 2001, Napoli, Italy, Italy
Conference papers inria-00615884v1
Image document

Modélisation 3D+t de l'arbre coronaire à partir de séquences angiographiques

Fabien Mourgues , Frédéric Devernay , Grégoire Malandain , Ève Coste-Manière
Journées ORASIS - 2001, 2001, Obernai, France
Conference papers hal-00821478v1

A Spatio-temporal Model-based Statistical Approach to Detect Evolving Multiple Sclerosis Lesions

David Rey , Jonathan Stoeckel , Grégoire Malandain , Nicholas Ayache
IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, MMBIA'01, 2001, Kauia, Hawai, USA, United States
Conference papers inria-00615890v1

Fusion of histological sections and MR images: towards the construction of an atlas of the human basal ganglia

Sébastien Ourselin , Eric Bardinet , Didier Dormont , Grégoire Malandain , Alexis Roche
4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), 2001, Utrecht, The Netherlands, Netherlands. pp.743--751
Conference papers inria-00615872v1

Using SPM to Detect Evolving MS Lesions

David Rey , Jonathan Stoeckel , Grégoire Malandain , Nicholas Ayache
4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), 2001, Utrecht, The Netherlands, Netherlands. pp.1232--1234
Conference papers inria-00615874v1

Retrospective Evaluation of Inter-subject Brain registration

Pierre Hellier , Christian Barillot , Isabelle Corouge , B. Giraud , Georges Le Goualher
4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), 2001, Utrecht, The Netherlands, Netherlands. pp.258--265
Conference papers inria-00615678v1
Image document

3D+t Modeling of Coronary Artery Tree from Standard Non Simultaneous Angiograms

Fabien Mourgues , Frédéric Devernay , Grégoire Malandain , Ève Coste-Manière
Medical Image Computing and Computer-Assisted Intervention - MICCAI 2001, Oct 2001, Utrecht, Netherlands. pp.1320-1322, ⟨10.1007/3-540-45468-3_213⟩
Conference papers inria-00267253v1

Smoothness and degrees of freedom restrictions when using SPM 99

Jonathan Stoeckel , Jean-Baptiste Poline , Grégoire Malandain , Nicholas Ayache , Jacques Darcourt
Human Brain Mapping HBM'01, 2001, Brighton, United Kingdom
Conference papers inria-00615888v1

Classification of SPECT Images of Normal Subjects versus Images of Alzheimer's Disease Patients

Jonathan Stoeckel , Grégoire Malandain , Octave Migneco , Pierre Malick Koulibaly , Philippe Robert
4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), 2001, Utrecht, The Netherlands, Netherlands. pp.666--674
Conference papers inria-00615876v1

Object Representation and Comparison Inferred from Its Medial Axis

Eric Bardinet , Grégoire Malandain , S. Damas , N. Perez de La Blanca Capilla
International Conference on Pattern Recognition (ICPR 2000), 2000, Barcelone, Espagne, Spain. pp.1712--1715
Conference papers inria-00615849v1

A new 3D segmentation of liver neoplasm, portal venous system and parenchymal contours

Luc Soler , Olivier Dourthe , Grégoire Malandain , Johan Montagnat , Hervé Delingette
European Congress of Radiology, 2000, Vienne (Autriche), Austria
Conference papers inria-00615847v1

An Automatic Virtual Patient Reconstruction from CT-Scans for Hepatic Surgical Planning

Luc Soler , Jean-Marie Clément , Christophe Koehl , Hervé Delingette , Grégoire Malandain
Medicine Meets Virtual Reality (MMVR'2000), 2000, Los Angeles, United States
Conference papers inria-00615853v1

A Fully Automatic Anatomical, Pathological and Fonctionnal Segmentation from CT-scans for Hepatic Surgery

Luc Soler , Hervé Delingette , Grégoire Malandain , Johan Montagnat , Nicholas Ayache
Medical Imaging 2000, SPIE, 2000, San Diego, United States. pp.246--255
Conference papers inria-00615852v1

Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images

Alexis Roche , Xavier Pennec , M. Rudolph , D.P. Auer , Grégoire Malandain
Proc. of the 3rd Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'00), 2000, Pittsburgh, Pennsylvanie, USA, United States. pp.567--577, ⟨10.1007/978-3-540-40899-4_58⟩
Conference papers inria-00615680v1

Structural Object Matching

Eric Bardinet , Sara Fernández-Vidal , S. Damas , Grégoire Malandain , N. Perez de La Blanca Capilla
Advanced Concepts for Intelligent Vision Systems (ACIVS 2000), 2000, Baden-Baden, Allemagne, Germany
Conference papers inria-00615842v1

Planification Chirurgicale Hépatique Assistée par Ordinateur

Luc Soler , Christophe Koehl , Hervé Delingette , Grégoire Malandain , Nicholas Ayache
11ème Journées de printemps de l'ACHBT, 2000, Paris (France), France
Conference papers inria-00615839v1

SPM Analysis Applied to MIBI-SPECT for the Diagnosis of Recurrent Oligodendrogliomas

I. Dygai , Jonathan Stoeckel , Octave Migneco , P. Desvignes , Grégoire Malandain
European Association of Nuclear Medicine Meeting, 2000, Paris, France, France
Conference papers inria-00615844v1

Absolute calibration of HMPAO SPECT using Xenon-133

Octave Migneco , Grégoire Malandain , Alexis Roche , I. Dygai , F. Bussière
European Association of Nuclear Medicine Meeting, 2000, Paris, France, France
Conference papers inria-00615845v1
Image document

Cylindrical Echocardiographic Image Segmentation Based on 3D Deformable Models

Johan Montagnat , Hervé Delingette , Grégoire Malandain
Medical Image Computing and Computer-Assisted Intervention - MICCAI'99, Sep 1999, Cambridge, United Kingdom. pp.168-175, ⟨10.1007/10704282_18⟩
Conference papers hal-00691700v1

Towards a Better Comprehension of Similarity Measures used in Medical Image Registration

Alexis Roche , Grégoire Malandain , Nicholas Ayache , Sylvain Prima
Proc. of 2nd Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'99), 1999, Cambridge, UK, United Kingdom. pp.555-566
Conference papers inria-00615832v1

Fusion Scanner / IRM entièrement automatique : perspective d'utilisation pour la radiothérapie

Pierre-Yves Bondiau , Grégoire Malandain , Karen Bénézery , Alexis Roche , R. Ferrand
Proc. du XIX Forum de Cancérologie, 1999, Paris, France
Conference papers inria-00615830v1

Planification Chirurgicale Hépatique Assistée par Ordinateur

Luc Soler , Jean-Marie Clément , Christophe Koehl , Hervé Delingette , Grégoire Malandain
Journées de la société française de Chirurgie Digestive, 1999, Paris, France
Conference papers inria-00615826v1

The Correlation Ratio as a New Similarity Measure for Multimodal Image Registration

Alexis Roche , Grégoire Malandain , Xavier Pennec , Nicholas Ayache
Medical Image Computing and Computer-Assisted Interventation, 1998, France. pp.1115-1124, ⟨10.1007/BFb0056181⟩
Conference papers cea-00333675v1

Model-Based Multiscale Detection of 3D Vessels

Karl Krissian , Grégoire Malandain , Nicholas Ayache , Régis Vaillant , Yves Trousset
Proc. of the IEEE Conf. on Computer Vision and Pattern Recognition, CVPR'98, 1998, Santa Barbara, United States. pp.722-727
Conference papers inria-00615687v1

Model-Based Multiscale Detection of 3D Vessels

Karl Krissian , Grégoire Malandain , Nicholas Ayache , Régis Vaillant , Yves Trousset
Proc. of Worshop on Biomedical Image Analysis WBIA'98, 1998, Santa Barbara, United States. pp.202-208
Conference papers inria-00615688v1

Modélisation numérique de l'écoulement dans les anévrismes cérébraux

Marc Thiriet , Grégoire Malandain
XXIIIème congrès de la société de Biomécanique, 1998, Lyon, France, France
Conference papers inria-00615816v1

Directional Anisotropic Diffusion Applied to Segmentation of Vessels in 3D Images

Karl Krissian , Grégoire Malandain , Nicholas Ayache
Scale-Space Theory in Computer Vision (Scale-Space'97), 1997, Utrecht, The Netherlands, Netherlands. pp.345--348
Conference papers inria-00615689v1

Fast Binary Image Processing Using Binary Decision Diagrams

Luc Robert , Grégoire Malandain
Computer Vision and Pattern Recognition, IEEE, 1997, Puerto Rico, Puerto Rico. pp.97--102
Conference papers inria-00615692v1

Automatic Segmentation of Portal Vein in CT-Scans of the Liver

Luc Soler , Grégoire Malandain , Johan Montagnat , Hervé Delingette , Nicholas Ayache
Proceedings of World Congress on Medical Physics and Biomedical Engineering, 1997, Nice, France, France. pp.788
Conference papers inria-00615793v1

SPECT memory activation studies thanks to non-rigid automated 3D image registration

Octave Migneco , Jean-Philippe Thirion , M. Benoit , Grégoire Malandain , Philippe Robert
CVRMed-MRCAS'97, 1997, Grenoble, France, France. pp.487--490
Conference papers inria-00615780v1

SPECT memory activation thanks to non-rigid coregistration

Octave Migneco , M. Benoit , Grégoire Malandain , Jean-Philippe Thirion , Philippe Robert
European Association of Nuclear Medecine Meeting, 1997, Glasgow, Scotland, United Kingdom
Conference papers inria-00615784v1

Matching 3D MR Angiography Data and 2D X-ray Angiograms

Jacques Feldmar , Grégoire Malandain , Nicholas Ayache , Sara Fernández-Vidal , Eric Maurincomme
First Joint Conference Computer Vision, Virtual Reality and Robotics in Medicine and Medical Robotics and Computer-Assisted Surgery - CVRMed-MRCAS'97, Mar 1997, Grenoble, France. pp.129--138, ⟨10.1007/BFb0029232⟩
Conference papers inria-00615779v1

L'oeil virtuel

Pierre-Yves Bondiau , Grégoire Malandain , Nicholas Ayache , C. Zur , Pierre Chauvel
103ème Congrès de la société française d'ophtalmologie, 1997, Paris, France, France
Conference papers inria-00615775v1

Eye Reconstruction and CT-Retinography Fusion for Proton Treatment Planning of Ocular Diseases

Pierre-Yves Bondiau , Grégoire Malandain
CVRMed-MRCAS'97, 1997, Grenoble, France, France. pp.705--714
Conference papers inria-00615778v1

Automatic eye reconstruction for radiotherapy

Pierre-Yves Bondiau , Grégoire Malandain , Pierre Chauvel , Frédérique Peyrade , J.N. Bruneton
1st Joint Annual Conference of the International Society for Computer Aided Surgery, 1997, Berlin, Germany, Germany
Conference papers inria-00615776v1

Activation mnésique en TEMP

Octave Migneco , Jacques Darcourt , M. Benoit , Grégoire Malandain , Jean-Philippe Thirion
36eme Colloque de médecine nucléaire 1997, 1997, Rennes, France, France
Conference papers inria-00615777v1

Segmentation automatique : application aux angioscanners 3D du foie

Luc Soler , Grégoire Malandain , Hervé Delingette
Proceedings of Sixth Orasis conference (ORASIS'97), 1997, La Colle-sur-Loup, France, France
Conference papers inria-00615690v1

Comparison and evaluation of retrospective intermodality image registration techniques

Jay B. West , Michael J. Fitzpatrick , Matthew Y. Wang , Benoit M. Dawant , Calvin R. Maurer
Medical Imaging 1996: Image Processing, Apr 1996, Newport Beach, California, USA, United States. ⟨10.1117/12.237936⟩
Conference papers inria-00615767v1

Clinical and Technical Requirements for Proton Treatment Planning of Ocular Diseases

Pierre Chauvel , W. Sauerwein , N. Bornfeld , W. Friedrichs , N. Brassart
First International Symposium on Special Aspects of Radiotherapy, 1996, Berlin (Germany), Germany
Conference papers inria-00615761v1

Squelettes euclidiens d'objets n-dimensionnels

Sara Fernández-Vidal , Grégoire Malandain
10ème Congrès Reconnaissance des Formes et Intelligence Artificielle (RFIA'96), AFCET - AFIA, 1996, Rennes, France, France
Conference papers inria-00615940v1

Projet de reconstruction tridimensionnelle de l'oeil à partir des images scanneurs, IRM et de fundographie. Utilisation pour la protonthérapie des tumeurs oculaires

Pierre-Yves Bondiau , Grégoire Malandain , Pierre Chauvel
35eme Congrès de la société française des physiciens d'hôpital, 1996, Toulouse, France, France
Conference papers inria-00615755v1

Extension of the ICP Algorithm to Non-Rigid Intensity-Based Registration of 3D Volumes

Jacques Feldmar , Grégoire Malandain , Jérôme Declerck , Nicholas Ayache
Mathematical Methods in Biomedical Image Analysis, 1996, San Francisco, California, USA, United States
Conference papers inria-00615765v1

Une étude TEMP d'activation mnésique réalisée grâce à des recalages d'images 3D

Octave Migneco , Jean-Philippe Thirion , M. Benoit , Grégoire Malandain , Philippe Robert
Actes du congrès sur la Méthodologie en imagerie fonctionnelle cérébrale, 1996, Lyon, France, France
Conference papers inria-00615758v1

Digital Euclidean skeleton in n-D

Sara Fernández-Vidal , Grégoire Malandain
9th Scandinavian Conference on Image Analysis (SCIA'95), IAPR, 1995, Uppsala, Sweden, Sweden. pp.517--524
Conference papers inria-00615740v1

Topologically correct skeleton in n-D

Grégoire Malandain , Sara Fernández-Vidal
5th Discrete Geometry for Computer Imagery (DGCI'95), 1995, Clermont-Ferrand, France, France. pp.199--208
Conference papers inria-00615739v1

Recalage sans cadre stéréotaxique d'images volumiques et projectives en radiologie interventionnelle

Nicholas Ayache , Jacques Feldmar , Grégoire Malandain , Eric Maurincomme , C. Picard
Mini colloque INSERM de radiologie interventionnelle, 1995, Paris, France
Conference papers inria-00615747v1

Automatic registration of Myocardial Perfusion study using a Potential Based Rigid Transformation

M.L. Goris , Grégoire Malandain , I. Marque
2nd International Conference of Nuclear Cardiology, 1995, Cannes France, France
Conference papers inria-00615738v1

Improving Registration of 3-D Medical Images Using a Mechanical Based Method

Grégoire Malandain , Sara Fernández-Vidal , Jean-Marie Rocchisani
3rd European Conference on Computer Vision (ECCV'94), 1994, Stockholm, Sweden, Sweden. pp.131--136
Conference papers inria-00615727v1

Rigid Registration of 3-D Objects by Motion Analysis

Grégoire Malandain , Sara Fernández-Vidal , Jean-Marie Rocchisani
12th International Conference on Pattern Recognition (ICPR'94), IAPR, 1994, Jérusalem, Israël, Israel. pp.579--581
Conference papers inria-00615725v1

3D superimposition of CT and SPECT images of the brain by a mechanical based method

Grégoire Malandain , Jean-Marie Rocchisani
European Association of Nuclear Medicine Congress, 1992, Lisbon, Portugal, Portugal
Conference papers inria-00615564v1

A new topological segmentation of discrete surfaces

Gilles Bertrand , Grégoire Malandain
2nd European Conference on Computer Vision (ECCV 92), 1992, no address, Italy. pp.710--71
Conference papers inria-00615560v1

Fast characterization of 3D simple points

Grégoire Malandain , Gilles Bertrand
IAPR 11th International Conference on Pattern Recognition, 1992, The Hague, The Netherlands, Netherlands
Conference papers inria-00615565v1

Registration of 3D medical images using a mechanical based method

Grégoire Malandain , Jean-Marie Rocchisani
IEEE EMBS satellite symposium on 3D advanced image processing in medicine, 1992, Rennes, France, France
Conference papers inria-00615570v1

Topological segmentation of discrete surfaces

Grégoire Malandain , Gilles Bertrand , Nicholas Ayache
Proceedings of the conference on Computer Vision and Pattern Recognition, IEEE, 1991, Lahaina, Maui, Hawaii, United States. pp.444--449
Conference papers inria-00615557v1

Topological classification in digital space

Grégoire Malandain , Gilles Bertrand , Nicholas Ayache
XIIth international conference on Information Processing in Medical Imaging (IPMI), 1991, Wye, Kent, England, United Kingdom. pp.300--313
Conference papers inria-00615558v1

Recursive filtering and edge closing: two primary tools for 3-D edge detection

Olivier Monga , Rachid Deriche , Grégoire Malandain , Jean-Pierre Cocquerez
1st European Conference on Computer Vision (ECCV'90), 1990, Nice, France, France
Conference papers inria-00615549v1

3-D edge detection by recursive filtering and edge tracking

Olivier Monga , Rachid Deriche , Grégoire Malandain , Jean-Pierre Cocquerez
10th International Conference on Pattern Recognition, 1990, Atlantic City, USA, United States
Conference papers inria-00615550v1
Image document

Asclepios: a Research Project-Team at INRIA for the Analysis and Simulation of Biomedical Images

Nicholas Ayache , Olivier Clatz , Hervé Delingette , Grégoire Malandain , Xavier Pennec
Bertot, Y. and Huet, G. and Lévy, J.-J. and Plotkin, G. From semantics to computer science: essays in honor of Gilles Kahn, Cambridge University Press, pp.415-436, 2009, ⟨10.1017/CBO9780511770524.019⟩
Book sections inria-00616094v1

Processing of In Vivo Fibered Confocal Microscopy Video Sequences

Tom Vercauteren , Nicholas Ayache , Nicolas Savoire , Grégoire Malandain , Aymeric Perchant
Rittscher, Jens and Machiraju, Raghu and Wong, Stephen T.C. Microscopic Image Analysis for Life Science Applications, Artech House, pp.441--463, 2008
Book sections inria-00616083v1

Applications de la géométrie discrète en imagerie médicale

Grégoire Malandain
Coeurjolly, David and Montanvert, Annick and Chassery, Jean-Marc. Géométrie discrète et images numériques, Hermès, pp.371--379, 2007, Traités IC2
Book sections inria-00616032v1
Image document

From extraction of physiological features with dynamic µ-SPECT imaging to modelling of iodide biodistribution in stomach

Marine Breuilly , Kaouthar Chatti , Jacques Darcourt , Philippe Franken , Julien Guglielmi
[Research Report] Inria Sophia Antipolis. 2015
Reports hal-01186222v2
Image document

On optimal chamfer masks and coefficients

Grégoire Malandain , Céline Fouard
[Research Report] RR-5566, INRIA. 2005, pp.36
Reports inria-00070440v1
Image document

Blockwise processing applied to brain micro-vascular network study

Céline Fouard , Grégoire Malandain , Steffen Prohaska , Malte Westerhoff
[Research Report] RR-5581, INRIA. 2005, pp.27
Reports inria-00070426v1
Image document

Respiratory Movement Correction in Emission Tomography

Mauricio Reyes Aguirre , Grégoire Malandain , Jacques Darcourt
RR-5279, INRIA. 2004, pp.47
Reports inria-00070721v1
Image document

Reconstruction of Coronary Arteries from One Rotational X-Ray Projection Sequence

Christophe Blondel , Grégoire Malandain , Régis Vaillant , Nicholas Ayache
[Research Report] RR-5214, INRIA. 2004, pp.43
Reports inria-00077050v1
Image document

Brain Tumor Growth Simulation

Olivier Clatz , Pierre-Yves Bondiau , Hervé Delingette , Maxime Sermesant , Simon K. Warfield
[Research Report] RR-5187, INRIA. 2004
Reports inria-00071401v1
Image document

Automated Piecewise Affine Registration of Biological Images

Alain Pitiot , Éric Bardinet , Paul M. Thompson , Grégoire Malandain
RR-4866, INRIA. 2003
Reports inria-00071717v1
Image document

Fusion of autoradiographies with an MR volume using 2-D and 3-D linear transformations

Éric Bardinet , Grégoire Malandain
RR-4791, INRIA. 2003
Reports inria-00071795v1
Image document

Automatic calculation of chamfer mask coefficients for large masks and anisotropic images

Céline Fouard , Grégoire Malandain
RR-4792, INRIA. 2003
Reports inria-00071794v1
Image document

Superresolution in MRI and its influence in statistical analysis

Pierre Kornprobst , Grégoire Malandain , Olivier Faugeras , R. Peeters , Thierry Viéville
[Research Report] RR-4513, INRIA. 2002
Reports inria-00072075v1
Image document

Robust Registration of Multi-Modal Medical Images: Towards Real-Time Clinical Applications

Sébastien Ourselin , Xavier Pennec , Radu Stefanescu , Grégoire Malandain , Nicholas Ayache
RR-4333, INRIA. 2001
Reports inria-00072254v1
Image document

Computing the Diameter of a Point Set

Grégoire Malandain , Jean-Daniel Boissonnat
RR-4233, INRIA. 2001
Reports inria-00072354v1
Image document

Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images

Alexis Roche , Xavier Pennec , Grégoire Malandain , Nicholas Ayache , Sébastien Ourselin
[Research Report] RR-3980, INRIA. 2000, pp.24
Reports inria-00072667v1
Image document

Analyse statistique d'images médicales : étude et utilisation du logiciel SPM

Marie-Laure Tabary , Nicholas Ayache , Jacques Darcourt , Grégoire Malandain
RR-3802, INRIA. 1999
Reports inria-00072857v1
Image document

Unifying Maximum Likelihood Approaches in Medical Image Registration

Alexis Roche , Grégoire Malandain , Nicholas Ayache
RR-3741, INRIA. 1999
Reports inria-00072923v1
Image document

Model Based Detection of Tubular Structures in 3D Images

Karl Krissian , Grégoire Malandain , Nicholas Ayache , Régis Vaillant , Yves Trousset
RR-3736, INRIA. 1999
Reports inria-00072929v1
Image document

Segmentation automatique : application aux angioscanners 3D du foie

Luc Soler , Grégoire Malandain , Hervé Delingette
RR-3496, INRIA. 1998
Reports inria-00073190v1
Image document

Multimodal Image Registration by Maximization of the Correlation Ratio

Alexis Roche , Grégoire Malandain , Nicholas Ayache , Xavier Pennec
RR-3378, INRIA. 1998
Reports inria-00073311v1
Image document

Model Based Multiscale Detection and Reconstruction of 3D Vessels

Karl Krissian , Grégoire Malandain , Nicholas Ayache
RR-3442, INRIA. 1998
Reports inria-00073248v1
Image document

Directional Anisotropic Diffusion Applied to Segmentation of Vessels in 3D Images

Karl Krissian , Grégoire Malandain , Nicholas Ayache
RR-3064, INRIA. 1996
Reports inria-00073628v1
Image document

Squelettes euclidiens d'objets discrets n-dimensionnels

Sara Fernández-Vidal , Grégoire Malandain
RR-2771, INRIA. 1996
Reports inria-00073921v1
Image document

Fast Binary Image Processing Using Binary Decision Diagrams

Luc Robert , Grégoire Malandain
RR-3001, INRIA. 1996
Reports inria-00073695v1
Image document

Physically Based Rigid Registration of 3-D Free-Form Objects : application to Medical Imaging

Grégoire Malandain , Sara Fernandez-Vidal , Jean-Marie Rocchisani
[Research Report] RR-2453, INRIA. 1994
Reports inria-00074222v1
Image document

Matching of 3D medical images with a potential based method

Grégoire Malandain , Jean-Marie Rocchisani
[Research Report] RR-1890, INRIA. 1993
Reports inria-00074781v1
Image document

On topology in multidimensional discrete

Grégoire Malandain
RR-2098, INRIA. 1993
Reports inria-00074574v1
Image document

Segmentation topologique des surfaces discretes

Grégoire Malandain , Gilles Bertrand , Nicholas Ayache
[Rapport de recherche] RR-1357, INRIA. 1990
Reports inria-00075202v1
Image document

Recursive filtering and edge closing : two primary tools for 3d edge detection

Olivier Monga , Rachid Deriche , Grégoire Malandain , J.P. Cocquerez
RR-1103, INRIA. 1989
Reports inria-00075456v1
Image document

Definition of motionless phases for monitoring gated reconstruction of SPECT images in alive mice

Marine Breuilly , Grégoire Malandain , Nicholas Ayache , Jacques Darcourt , Thierry Pourcher
ICVSS - International Computer Vision Summer School, Jul 2010, Punta Sampieri, 97010 Scicli, Sicile, Italy. 2010
Documents associated with scientific events hal-00759962v1