Gautier SARAH

Publications

Article dans une revue (30)

Genome-wide association analysis of flowering date in a collection of cultivated olive tree Laila Aqbouch,Omar Abou-Saaid,Gautier Sarah,Lison Zunino,Vincent Seguraet al. Horticulture research, 2025, 12 (1), pp.uhae265. ⟨10.1093/hr/uhae265/7786770⟩ Article dans une revue hal-04870626v2
QTL mapping and candidate gene identification of the full flowering date trait in olive trees (Olea Europaea L.) Othmane Lamoumni,Ahmed El Bakkali,Omar Abou-Saaid,Philippe Cubry,Lorenzo Leonet al. BMC Plant Biology, 2025, 25, pp.1768. ⟨10.1186/s12870-025-07171-9⟩ Article dans une revue hal-05472731v1
Time-resolved transcriptomics of single Vitis vinifera fruits: membrane transporters as switches of the double sigmoidal growth Stefania Savoi,Mengyao Shi,Gautier Sarah,Audrey Weber,Laurent Torregrosaet al. Journal of Experimental Botany, 2025, 76 (11), pp.3105-3124. ⟨10.1093/jxb/erae502⟩ Article dans une revue hal-04739970v2
Characterization of an olive population relevant for genome-wide association studies on flowering time Laila Aqbouch,Lison Zunino,Omar Abou-Saaid,Gautier Sarah,Pierre Mournetet al. Acta Horticulturae, 2024, 1412, pp.129-136. ⟨10.17660/ActaHortic.2024.1412.21⟩ Article dans une revue hal-04870728v1
Vitis rotundifolia Genes Introgressed with RUN1 and RPV1: Poor Recombination and Impact on V. vinifera Berry Transcriptome Mengyao Shi,Stefania Savoi,Gautier Sarah,Alexandre Soriano,Audrey Weberet al. Plants, 2024, 13 (15), pp.2095. ⟨10.3390/plants13152095⟩ Article dans une revue hal-04673480v1
Target enrichment sequencing coupled with GWAS identifies MdPRX10 as a candidate gene in the control of budbreak in apple Amy E. Watson,Baptiste Guitton,Alexandre Soriano,Ronan Rivallan,Hélène Vigneset al. Frontiers in Plant Science, 2024, 15, pp.1352757. ⟨10.3389/fpls.2024.1352757⟩ Article dans une revue hal-04519907v1
Genomic evidence of genuine wild versus admixed olive populations evolving in the same natural environments in western Mediterranean Basin Lison Zunino,Philippe Cubry,Gautier Sarah,Pierre Mournet,Ahmed El Bakkaliet al. PLoS ONE, 2024, 19, pp.e0295043. ⟨10.1371/journal.pone.0295043⟩ Article dans une revue hal-04519623v1
Dual domestications and origin of traits in grapevine evolution Yang Dong,Shengchang Duan,Qiuju Xia,Zhenchang Liang,Xiao Donget al. Science, 2023, 379 (6635), pp.892-901. ⟨10.1126/science.add8655⟩ Article dans une revue hal-04159992v1
High quality phased assembly of grape genome offer new opportunities in chimera detection Victoria Sichel,Gautier Sarah,Nabil Girollet,Valérie Laucou,Catherine Rouxet al. Vitis, 2023, 62 (Special Issue), pp.99-102. ⟨10.5073/vitis.2023.62.special-issue.99-102⟩ Article dans une revue hal-04188641v1
Chimeras in Merlot grapevine revealed by phased assembly V. Sichel,G. Sarah,Nabil Girollet,Valérie Laucou,Catherine Rouxet al. BMC Genomics, 2023, 24 (1), pp.396. ⟨10.1186/s12864-023-09453-8⟩ Article dans une revue hal-04187937v1
A chromosome-level, haplotype-phased Vanilla planifolia genome highlights the challenge of partial endoreplication for accurate whole-genome assembly Quentin Piet,Gaetan Droc,William Marande,Gautier Sarah,Stéphanie Bocset al. Plant Communications, 2022, 3 (5), pp.100330. ⟨10.1016/j.xplc.2022.100330⟩ Article dans une revue hal-03678239v1
RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes Clément Agret,Annie Chateau,Gaetan Droc,Gautier Sarah,Manuel Ruizet al. Journal of Open Source Software, 2022, 7 (80), pp.4363. ⟨10.21105/joss.04363⟩ Article dans une revue lirmm-03920648v1
The Identification of Small RNAs Differentially Expressed in Apple Buds Reveals a Potential Role of the Mir159-MYB Regulatory Module during Dormancy Julio Garighan,Etienne Dvorak,Joan Estevan,Karine Loridon,Bruno Huettelet al. Plants, 2021, 10 (12), ⟨10.3390/plants10122665⟩ Article dans une revue hal-03602721v1
Genome ancestry mosaics reveal multiple and cryptic contributors to cultivated banana Guillaume Martin,Céline Cardi,Gautier Sarah,Sébastien Ricci,Christophe Jennyet al. The Plant Journal, 2020, 102 (5), pp.1008-1025. ⟨10.1111/tpj.14683⟩ Article dans une revue hal-02628306v1
Pervasive hybridizations in the history of wheat relatives Sylvain Glémin,Celine Scornavacca,Jacques Dainat,Concetta Burgarella,Veronique Viaderet al. Science Advances , 2019, 5 (5), pp.eaav9188. ⟨10.1126/sciadv.aav9188⟩ Article dans une revue hal-02144799v1
Evolutionary transcriptomics reveals the origins of olives and the genomic changes associated with their domestication Muriel Gros-Balthazard,Guillaume Besnard,G Sarah,Yan Holtz,Julie Leclercqet al. The Plant Journal, 2019, 100 (1), pp.143-157. ⟨10.1111/tpj.14435⟩ Article dans une revue hal-02178869v1
Transcriptome data from three endemic Myrtaceae species from New Caledonia displaying contrasting responses to myrtle rust (Austropuccinia psidii) Julia Soewarto,Chantal Hamelin,Stéphanie Bocs,Pierre Mournet,Hélène Vigneset al. Data in Brief, 2019, 22, pp.794 - 811. ⟨10.1016/j.dib.2018.12.080⟩ Article dans une revue (data paper) hal-02618244v1
Evolutionary transcriptomics reveals the origins of olives and the genomic changes associated with their domestication Muriel Gros‐balthazard,Guillaume Besnard,Gautier Sarah,Yan Holtz,Julie Leclercqet al. The Plant Journal, 2019, 100 (1), pp.143-157. ⟨10.1111/tpj.14435⟩ Article dans une revue hal-02988768v1
A novel high-density grapevine (Vitis vinifera L.) integrated linkage map using GBS in a half-diallel population Javier Tello,Catherine Roux,Hajar Chouiki Alilou,Valerie Laucou,Gautier Sarahet al. TAG Theoretical and Applied Genetics, 2019, 132, pp.2237-2252. ⟨10.1007/s00122-019-03351-y⟩ Article dans une revue hal-02628952v1
A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives Gautier Sarah,Félix Homa,Stéphanie Pointet,Sandy Contreras,François Sabotet al. Molecular Ecology Resources, 2017, 17 (3), pp.565-580. ⟨10.1111/1755-0998.12587⟩ Article dans une revue hal-01930391v1
Domestication rewired gene expression and nucleotide diversity patterns in tomato Christopher Sauvage,Andrea Rau,Charlotte Aichholz,Joel Chadoeuf,Gautier Sarahet al. The Plant Journal, 2017, 91 (4), pp.631-645. ⟨10.1111/tpj.13592⟩ Article dans une revue hal-01594937v1
Temperature desynchronizes sugar and organic acid metabolism in ripening grapevine fruits and remodels their transcriptome Markus Rienth,Laurent Torregrosa,Gautier Sarah,Morgane Ardisson,Jean Marc Brillouetet al. BMC Plant Biology, 2016, 16 (1), 23 p. ⟨10.1186/s12870-016-0850-0⟩ Article dans une revue hal-01353542v1
Gigwa—Genotype investigator for genome- wide analyses Guilhem Sempéré,Florian Philippe,Alexis Dereeper,Manuel Ruiz,Gautier Sarahet al. GigaScience, 2016, 5 (1), pp.1-9. ⟨10.1186/s13742-016-0131-8⟩ Article dans une revue hal-01411506v1
The South Green portal: a comprehensive resource for tropical and Mediterranean crop genomics Valentin Guignon,Yann Hueber,Mathieu Rouard,Stéphanie Bocs,David Couvinet al. Current Plant Biology, 2016, 7-8, pp.6-9. ⟨10.1016/j.cpb.2016.12.002⟩ Article dans une revue hal-02631148v1
La diversité génétique des plantes cultivées à l'heure de l'informatique génétique à haut débit: génomique comparative de la domestication Jacques David,Sylvain Glémin,Gautier Sarah,Benoit Nabholz,Francois Sabotet al. Sélectionneur Français, 2016, 67, pp.3-13 Article dans une revue (article de synthèse) hal-01607736v1
PHIV-RootCell: a supervised image analysis tool for rice root anatomical parameter quantification Marc Lartaud,Christophe Perin,Brigitte Courtois,Emilie Thomas,Sophia Henryet al. Frontiers in Plant Science, 2015, 5, pp.1-7. ⟨10.3389/fpls.2014.00790⟩ Article dans une revue hal-02637835v1
SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations Alexis Dereeper,Felix Homa,Gwendoline Andres,Guilhem Sempere,Gautier Sarahet al. Nucleic Acids Research, 2015, 43 (W1), pp.W295-W300. ⟨10.1093/nar/gkv351⟩ Article dans une revue hal-01279141v1
Genotyping by sequencing transcriptomes in an evolutionary pre-breeding durum wheat population Jacques David,Yan Holtz,Vincent Ranwez,Sylvain Santoni,Gautier Sarahet al. Molecular Breeding, 2014, 34 (4), pp.1531-1548. ⟨10.1007/s11032-014-0179-z⟩ Article dans une revue hal-01123443v1
Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice ( Oryza glaberrima ) Benoit Nabholz,Gautier Sarah,François Sabot,Manuel Ruiz,Hélène Adamet al. Molecular Ecology, 2014, 23 (9), pp.2210 - 2227. ⟨10.1111/mec.12738⟩ Article dans une revue hal-01919691v1
Comparative Transcriptome Analysis of Three Oil Palm Fruit and Seed Tissues That Differ in Oil Content and Fatty Acid Composition Stéphane Dussert,Chloe Guerin,Mariette Andersson,Thierry Joet,Timothy J. Tranbargeret al. Plant Physiology, 2013, 162 (3), pp.1337 - 1358. ⟨10.1104/pp.113.220525⟩ Article dans une revue hal-01268069v1

Pré-publication, Document de travail (5)

A roadmap for the adoption of pangenomics in agronomy Stéphanie Bocs,Camille Carrette,Johann Confais,Siegfried Dubois,Ludovic Duvauxet al. 2025 Pré-publication, Document de travail (preprint/prepublication) hal-05357866v2
Unraveling the genetic basis of full flowering date in olive tree through QTL mapping approach: Towards climate-adaptive breeding Othmane Lamoumni,Ahmed El Bakkali,Omar Abou-Saaid,Phillipe Cubry,Lorenzo Leonet al. 2025 Pré-publication, Document de travail (preprint/prepublication) hal-05207778v1
SynFlow: an interactive online genome structural variants viewer Marilyne Summo,Gaetan Droc,Mathieu Rouard,Gautier Sarah 2025 Pré-publication, Document de travail hal-05399031v1
Whole genome sequencing dataset for a Vitis vinifera diversity panel Gautier Sarah,Baptiste Pierre,Eva Coindre,Agnès Doligez,Thierry Lacombeet al. 2025 Pré-publication, Document de travail hal-05322783v1
RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes Clément Agret,Annie Chateau,Gaëtan Droc,Gautier Sarah,Alban Mancheronet al. 2021 Pré-publication, Document de travail lirmm-03117453v1

Communication dans un congrès (17)

Molecular insights into the DELLA-SPL-MIR156 regulatory network controlling floral transition in apple (Malus domestica) Mohamad Al Bolbol,Virginia Fernandez,Kwanho Jeong,Joan Estevan,Samer El Khouryet al. 4th edition of the INUPRAG Symposium, Oct 2025, Montpellier, France Communication dans un congrès hal-05440136v1
Identifying physiological and genetic bases of grapevine adaptation to climate change with maintained quality: Genome diversity as a driver for phenotypic plasticity (‘PlastiVigne’ project) Dominique This,Roberto Bacilieri,Eva Coindre,Olivia Di Valentin,Baptiste Pierreet al. Open GPB 2024 - Open Conference on Grapevine Physiology and Biotechnology, Jul 2024, Logrono La Riora, Spain. ⟨10.58233/KIpkvVol⟩ Communication dans un congrès hal-04677493v1
Chimeras in Merlot grapevine revealed by phased assembly V. Sichel,G. Sarah,Nabil Girollet,Valérie Laucou,C. Rouxet al. PPAG-Australia, International Plant and Animal Genome Conference, IPPN, Sep 2023, Westin Perth, Australia Communication dans un congrès hal-04569823v1
Intravarietal diversity: an opportunity for climate change adaptation Victoria Sichel,Gautier Sarah,Loïc Le Cunff,Patrice This,Thierry Lacombeet al. 22. GiESCO International Meeting, Giesco, Jul 2023, Ithaca, United States Communication dans un congrès hal-04188529v1
The Chenin clone project: Current progress towards establishing a scientific base for intravarietal diversity. Patrice This,Valérie Laucou,Catherine Roux,Gautier Sarah,Thierry Lacombeet al. Chenin Blanc International Congress, Chenin blanc association, Nov 2022, Stellenbosch, South Africa Communication dans un congrès hal-04188511v1
A novel high-density grapevine integrated linkage map using GBS in a multi-parental population: preliminary results Javier Tello Moro,Catherine Roux,Valerie Laucou,Gautier Sarah,Timothée Flutreet al. 12. International Conference on Grapevine Breeding and Genetics, Jul 2018, Bordeaux, France Communication dans un congrès hal-01857671v1
Integrating novel genotyping and phenotyping technologies for grape genetics. International Congress on Grapevine and Wine Sciences Javier Tello Moro,Catherine Roux,Valerie Laucou,Gautier Sarah,Luc Bidelet al. International Congress on Grapevine and Wine Sciences, Nov 2018, Logrono, Spain. 242 p Communication dans un congrès hal-02736417v1
Low growth temperatures uncouple sugar accumulation from malic acid degradation in ripenning microvine berries Markus Rienth,Laurent Torregrosa,Gautier Sarah,Morgane Ardisson,Gilbert Lopezet al. InterVitis InterFructa 2016, Nov 2016, Stuttgart, Germany Communication dans un congrès hal-02793122v1
Phylogenomics unravels the complex reticulated history and shifts in mating systems in wheat relatives (Aegilops/Triticum genus) Celine Scornavacca,Sylvain Glémin,Jacques Dainat,Concetta Burgarella,Gautier Sarahet al. ALPHY 2016: Belgium-French meeting on Bioinformatics and Evolutionary Genomics March 17-18 2016, Institut de Biologie Physico-Chimique (IBPC). Paris, FRA. Muséum National d’Histoire Naturelle (MNHN), FRA., Mar 2016, Lille, France Communication dans un congrès hal-02793573v1
Sugar accumulation and malic degradation uncoupled by temperature in microwine berries Markus Rienth,Rezth Shahood,Gautier Sarah,Morgane Ardisson,Gilbert Lopezet al. 19. Journées Internationales de Viticulture GiESCO, May 2015, Gruissan, France. 810 p Communication dans un congrès hal-01269212v1
Modelling the population history using population genomics : the tomato domestication as a case of study Christopher Sauvage,Charlotte Aichholz,Gautier Sarah,Manuel Ruiz,Mathilde Causseet al. 12. Solanaceae Conference, Université de Bordeaux (UB). FRA., Oct 2015, Bordeaux, France Communication dans un congrès hal-01269378v1
The night transcriptome of grapevine berries reveals new insights in developmental pattern and heat stress response Markus Rienth,Laurent Torregrosa,Mary T. Kelly,Nathalie Luchaire,Ratthaphon Chatbanyonget al. 11. International Conference on Grapevine Breeding and Genetics, Jul 2014, Beijing, China Communication dans un congrès hal-01601505v1
Broadening the genetic bases of durum wheat. Proceedings of the International Symposium on Genetics and Breeding of Durum Wheat Jacques David,Muriel Tavaud,Pierre Roumet,Marie-Helene Muller,Sylvain Santoniet al. International Symposium : Genetics and Breeding of Durum Wheat, May 2013, Rome, Italy. 636 p Communication dans un congrès hal-02739452v1
Genotyping by sequencing polyploidy wheat using RNAseq: Pitfalls and perspectives Muriel Tavaud-Pirra,Vincent Ranwez,Morgane Ardisson,Gautier Sarah,Sylvain Santoniet al. International Symposium on Genetics and Breeding of Durum Wheat, May 2013, Rome, Italy Communication dans un congrès hal-01268029v1
Disentangling homeologous contigs in allo-tetraploid assembly: application to durum wheat Vincent Ranwez,Yan Holtz,Gautier Sarah,Morgane Ardisson,Sylvain Santoniet al. Eleventh Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics, Oct 2013, Lyon, France. ⟨10.1186/1471-2105-14-S15-S15⟩ Communication dans un congrès hal-01137179v1
Major causes of somatic polymorphism in clonal grape cultivars Gregory Carrier,Alexis Dereeper,Delphine Legrand,Sabine Sabot,Vincent Maillolet al. International Plant & Animal Genome XXI, Jan 2013, San Diego, United States Communication dans un congrès hal-01267989v1
Broadening the genetic basis of durum wheat Jacques David,Muriel Tavaud,Pierre Roumet,Marie-Helene Muller,Sylvain Santoniet al. 13. International Wheat Genetics Symposium, May 2013, Rome, Italy. 1 p Communication dans un congrès hal-02807391v1

Poster de conférence (6)

Deciphering the role of SPL9 and its regulatory network in the control of the floral transition in apple tree (Malus domestica) Mohamad Al Bolbol,Virginia Fernandez,Kwanho Jeong,Joan Estevan,Samer El Khouryet al. 17. Plant Molecular Biology Meeting (RBMP 2024), Jul 2024, Castellon de la Plana, Spain. Poster de conférence hal-05018893v1
Partial endoreplication challenges whole genome assembly: the case of #Vanilla planifolia# (Orchidaceae) Sonja Siljak-Yakovlev,Olivier Bouchez,Céline Lopez-Roques,Sandra Lepers-Andrzejewski,Laurent Bourgoiset al. Plant Genomics and Gene Editing Congress: Europe, Apr 2022, The Hague, Netherlands. 2022 Poster de conférence hal-04343958v1
Study of the temperature-mediated transcriptional and post-transcriptional regulation of dormancy and budbreak in apple Julio Garighan,Isabelle Farrera,Gautier Sarah,Priscila Grynberg,Roberto Coiti Togawaet al. 10. Rosaceae Genomics Conference, Dec 2020, Online, Spain Poster de conférence hal-03324395v1
Insight into the hybrid mosaic structure of cultivated banana genomes Guillaume Martin,Céline Cardi,Gautier Sarah,Cyril Jourda,Sébastien Ricciet al. Plant Genome Evolution 2017, Oct 2017, Sitges, Spain. 1 p., 2017 Poster de conférence hal-02789316v1
TOGGLE-3 : a tool for on the fly pipelines creation and performing robust large-scale NGS analyses Sébastien Ravel,Christine Tranchan-Dubreuil,Cécile Monat,Gautier Sarah,Julie Orjuela-Bouniolet al. JOBIM 2016 : Journées ouvertes de biologie informatique et mathématiques, Jun 2016, Lyon, France. , 437 p., 2016, JOBIM 2016 Poster de conférence hal-02738889v1
South Green bioinformatics platform: Update 2015 A. Armero,Franc-Christophe Baurens,Stephanie Bocs,A. Breil,Frédéric F. de Lamotteet al. 3. Plant Genomics Congress, May 2015, London, United Kingdom. Global Engage, 2015, Plant Genomics Congress Poster de conférence hal-02739966v1

Logiciel (1)

RedOak Clément Agret,Alban Mancheron,Gautier Sarah 2017, ⟨swh:1:dir:b0ab791cdb79f7adebb98549a2546e0b070b8237;origin=https://gite.lirmm.fr/doccy/RedOak;visit=swh:1:snp:ee2f64fb510a243f2e7ac0875b80c782c4bc0351;anchor=swh:1:rev:c875c2a7a70de544e900ffdbc0fecc11c8ecd469⟩ Logiciel lirmm-03925385v1