Guillem Rigaill

Publications

Article dans une revue (49)

Online multivariate changepoint detection: leveraging links with computational geometry Liudmila Pishchagina,Gaetano Romano,Paul Fearnhead,Vincent Runge,Guillem Rigaill Journal of the Royal Statistical Society: Series B, 2025, ⟨10.1093/jrsssb/qkaf046⟩ Article dans une revue hal-05239757v1
Ms.FPOP: An Exact and Fast Segmentation Algorithm With a Multiscale Penalty Arnaud Liehrmann,Guillem Rigaill Journal of Computational and Graphical Statistics, 2025, 34 (2), pp.707-717. ⟨10.1080/10618600.2024.2402895⟩ Article dans une revue hal-04190673v1
gfpop : An R Package for Univariate Graph-Constrained Change-Point Detection Vincent Runge,Toby Dylan Hocking,Gaetano Romano,Fatemeh Afghah,Paul Fearnheadet al. Journal of Statistical Software, 2023, 106 (6), pp.1-39. ⟨10.18637/jss.v106.i06⟩ Article dans une revue hal-04191319v2
Fast Online Changepoint Detection via Functional Pruning CUSUM statistics Gaetano Romano,Idris Eckley,Paul Fearnhead,Guillem Rigaill Journal of Machine Learning Research, 2023, 24, pp.1-36. ⟨10.48550/arXiv.2110.08205⟩ Article dans une revue hal-04190669v1
DiffSegR: an RNA-seq data driven method for differential expression analysis using changepoint detection Arnaud Liehrmann,Etienne Delannoy,Alexandra Launay-Avon,Elodie Gilbault,Olivier Loudetet al. NAR Genomics and Bioinformatics, 2023, 5 (4), pp.lqad098. ⟨10.1093/nargab/lqad098⟩ Article dans une revue hal-04282211v2
Strive or thrive: Trends in Phytophthora capsici gene expression in partially resistant pepper Gaëtan Maillot,Emmanuel Szadkowski,Anne Massire,Véronique Brunaud,Guillem Rigaillet al. Frontiers in Plant Science, 2022, 13 (980587), pp.1-19. ⟨10.3389/fpls.2022.980587⟩ Article dans une revue hal-03908269v1
Generalized Functional Pruning Optimal Partitioning (GFPOP) for Constrained Changepoint Detection in Genomic Data Toby Dylan Hocking,Guillem Rigaill,Paul Fearnhead,Guillaume Bourque Journal of Statistical Software, 2022, 101 (10), ⟨10.18637/jss.v101.i10⟩ Article dans une revue hal-04191295v1
Adjusting the adjusted Rand Index A multinomial story Martina Sundqvist,Julien Chiquet,Guillem Rigaill Computational Statistics, 2022, 38 (1), pp.327-347. ⟨10.1007/s00180-022-01230-7⟩ Article dans une revue hal-03696588v1
Genome-Wide Identification of Key Components of RNA Silencing in Two Phaseolus vulgaris Genotypes of Contrasting Origin and Their Expression Analyses in Response to Fungal Infection Juan Alvarez-Diaz,Manon Richard,Vincent Thareau,Gianluca Teano,Christine Paysant-Le-Rouxet al. Genes, 2022, 13 (1), pp.1-19. ⟨10.3390/genes13010064⟩ Article dans une revue hal-04191305v1
Full Length Transcriptome Highlights the Coordination of Plastid Transcript Processing Marine Guilcher,Arnaud Liehrmann,Chloé Seyman,Thomas Blein,Guillem Rigaillet al. International Journal of Molecular Sciences, 2021, 22 (20), pp.1-15. ⟨10.3390/ijms222011297⟩ Article dans une revue hal-03343771v1
Increased peak detection accuracy in over-dispersed ChIP-seq data with supervised segmentation models Arnaud Liehrmann,Guillem Rigaill,Toby Dylan Hocking BMC Bioinformatics, 2021, 22 (1), ⟨10.1186/s12859-021-04221-5⟩ Article dans une revue hal-03333772v1
Wide Cross-species RNA-Seq Comparison Reveals Convergent Molecular Mechanisms Involved in Nickel Hyperaccumulation Across Dicotyledons Vanesa Sanchez Garcia de La Torre,Clarisse Majorel-Loulergue,Guillem J. Rigaill,Dubiel A. Gonzalez,Ludivine Soubigou-Taconnatet al. New Phytologist, 2021, 229 (2), pp.994-1006. ⟨10.1111/nph.16775⟩ Article dans une revue hal-02890477v1
Fast tree aggregation for consensus hierarchical clustering Audrey Hulot,Julien Chiquet,Florence Jaffrezic,Guillem Rigaill BMC Bioinformatics, 2020, 21 (1), ⟨10.1186/s12859-020-3453-6⟩ Article dans une revue hal-02961035v1
Constrained Dynamic Programming and Supervised Penalty Learning Algorithms for Peak Detection in Genomic Data Toby Dylan Hocking,Guillem Rigaill,Paul Fearnhead,Guillaume Bourque Journal of Machine Learning Research, 2020, 21, pp.1 - 40 Article dans une revue hal-02961069v1
Detecting Abrupt Changes in the Presence of Local Fluctuations and Autocorrelated Noise Gaetano Romano,Guillem Rigaill,Vincent Runge,Paul Fearnhead Journal of the American Statistical Association, In press, pp.1-16. ⟨10.1080/01621459.2021.1909598⟩ Article dans une revue hal-02961038v1
Relating and comparing methods for detecting changes in mean Paul Fearnhead,Guillem Rigaill Stat, 2020, 9 (1), ⟨10.1002/sta4.291⟩ Article dans une revue hal-02961044v1
LRP8 is overexpressed in estrogen-negative breast cancers and a potential target for these tumors Virginie Maire,Faisal Mahmood,Guillem Rigaill,Mengliang Ye,Amélie Brissonet al. Cancer Medicine, 2019, 8 (1), pp.325-336. ⟨10.1002/cam4.1923⟩ Article dans une revue hal-02624466v1
Protein arginine methyltransferase 5: A novel therapeutic target for triple-negative breast cancers Mathilde Vinet,Samyuktha Suresh,Virginie Maire,Clarisse Monchecourt,Fariba Nematiet al. Cancer Medicine, 2019, 8 (5), pp.2414-2428. ⟨10.1002/cam4.2114⟩ Article dans une revue hal-02625897v1
Screening populations for copy number variation using genotyping-by-sequencing: a proof of concept using soybean fast neutron mutants Marc-Andre Lemay,Davoud Torkamaneh,Guillem Rigaill,Brian Boyle,Adrian O. Stecet al. BMC Genomics, 2019, 20, pp.634. ⟨10.1186/s12864-019-5998-1⟩ Article dans une revue hal-02625904v1
Changepoint detection in the presence of outliers Paul Fearnhead,Guillem Rigaill Journal of the American Statistical Association, 2019, 114 (525), pp.169-183. ⟨10.1080/01621459.2017.1385466⟩ Article dans une revue hal-02622377v1
Adjacency-constrained hierarchical clustering of a band similarity matrix with application to Genomics Christophe Ambroise,Alia Dehman,Pierre Neuvial,Guillem Rigaill,Nathalie Vialaneix Algorithms for Molecular Biology, 2019, 14, pp.22. ⟨10.1186/s13015-019-0157-4⟩ Article dans une revue hal-02006331v2
New efficient algorithms for multiple change-point detection with reproducing kernels Alain Celisse,Guillemette Marot,Pierre-Jean Male,Guillem Rigaill Computational Statistics and Data Analysis, 2018, 128, pp.200-220. ⟨10.1016/j.csda.2018.07.002⟩ Article dans une revue hal-02621669v1
Homoeologous exchanges cause extensive dosage-dependent gene expression changes in an allopolyploid crop Andrew Lloyd,Aurélien Blary,Delphine Charif,Catherine Charpentier,Joseph Tranet al. New Phytologist, 2018, 217 (1), pp.367-377. ⟨10.1111/nph.14836⟩ Article dans une revue hal-02624624v1
Allele-specific expression and genetic determinants of transcriptomic variations in response to mild water deficit in tomato Elise Albert,Renaud Duboscq,Muriel Latreille,Sylvain Santoni,Matthieu Beukerset al. The Plant Journal, 2018, 96 (3), pp.635-650. ⟨10.1111/tpj.14057⟩ Article dans une revue hal-02620940v1
Two interacting PPR proteins are major Arabidopsis editing factors in plastid and mitochondria Damien Guillaumot,Mauricio Lopez Obando,Kévin Baudry,Alexandra Launay-Avon,Guillem Rigaillet al. Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (33), pp.8877-8882. ⟨10.1073/pnas.1705780114⟩ Article dans une revue hal-01606226v1
Independent introductions and admixtures have contributed to adaptation of European maize and its American counterparts Jean-Tristan Brandenburg,Tristan Mary,Guillem Rigaill,Sarah J. Hearne,Hélène Cortiet al. PLoS Genetics, 2017, 13 (3), pp.e1006666. ⟨10.1371/journal.pgen.1006666⟩ Article dans une revue hal-01605143v1
Fast Tree Inference With Weighted Fusion Penalties Julien Chiquet,Pierre Gutierrez,Guillem Rigaill Journal of Computational and Graphical Statistics, 2017, 26 (1), pp.205 - 216. ⟨10.1080/10618600.2015.1096789⟩ Article dans une revue hal-01597604v1
On optimal multiple changepoint algorithms for large data Robert Maidstone,Toby Hocking,Guillem Rigaill,Paul Fearnhead Statistics and Computing, 2017, 27 (2), pp.519-533. ⟨10.1007/s11222-016-9636-3⟩ Article dans une revue hal-01603953v1
On coding effects in regularized categorical regression Julien Chiquet,Yves Grandvalet,Guillem Rigaill Statistical Modelling, 2016, 16 (3), pp.228-237. ⟨10.1177/1471082X16644998⟩ Article dans une revue hal-01338164v1
Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis Guillem Rigaill,Sandrine Balzergue,Véronique Brunaud,Eddy Blondet,Andrea Rauet al. Briefings in Bioinformatics, 2016, 19 (1), pp.65-76. ⟨10.1093/bib/bbw092⟩ Article dans une revue hal-01595551v1
Unraveling the early molecular and physiological mechanisms involved in response to phenanthrene exposure Anne-Sophie Dumas,Ludivine Taconnat,Evangelos Barbas,Guillem Rigaill,Olivier Catriceet al. BMC Genomics, 2016, 17 (1), pp.818. ⟨10.1186/s12864-016-3133-0⟩ Article dans une revue hal-01397859v1
Transcriptome analysis of Wnt3a-treated triple-negative breast cancer cells Sylvie Maubant,Bruno Tesson,Virginie Maire,Mengliang Ye,Guillem Rigaillet al. PLoS ONE, 2015, 10 (4), 26 p. ⟨10.1371/journal.pone.0122333⟩ Article dans une revue hal-02639667v1
GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response Rim Zaag,Jean-Philippe Tamby,Cecile Guichard,Zakia Tariq,Guillem Rigaillet al. Nucleic Acids Research, 2015, 43 (Database issue), pp.D1010-D1017. ⟨10.1093/nar/gku1155⟩ Article dans une revue hal-01137554v1
Performance evaluation of DNA copy number segmentation methods Morgane Pierre-Jean,Guillem Rigaill,Pierre Neuvial Briefings in Bioinformatics, 2015, 16 (4), pp.600-615. ⟨10.1093/bib/bbu026⟩ Article dans une revue hal-00952896v2
TIPIN depletion leads to apoptosis in breast cancer cells Céline Baldeyron,Amélie Brisson,Bruno Tesson,Fariba Nemati,Stéphane Koundrioukoffet al. Molecular Oncology, 2015, 9 (8), pp.1580-1598. ⟨10.1016/j.molonc.2015.04.010⟩ Article dans une revue hal-02639424v1
Fast estimation of the Integrated Completed Likelihood criterion for change-point detection problems with applications to Next-Generation Sequencing data Alice Cleynen,The Minh Luong,Guillem Rigaill,Gregory Nuel Signal Processing, 2014, 98, pp.233-242. ⟨10.1016/j.sigpro.2013.11.029⟩ Article dans une revue hal-01197622v1
SegAnnDB: interactive web-based genomic segmentation Toby D. Hocking,Valentina Boeva,Guillem Rigaill,Gudrun Schleiermacher,Isabelle Janoueix-Leroseyet al. Bioinformatics, 2014, 30 (11), pp.1539-1546. ⟨10.1093/bioinformatics/btu072⟩ Article dans une revue hal-01101868v1
Segmentor3IsBack : an R package for the fast and exact segmentation of Seq-data Alice Cleynen,Michel Koskas,Guillem Rigaill,Stephane Robin Algorithms for Molecular Biology, 2014, 9, 11 p. ⟨10.1186/1748-7188-9-6⟩ Article dans une revue hal-01197619v1
Fast and Parallel Algorithm for Population-Based Segmentation of Copy-Number Profiles Guillem Rigaill,Vincent Miele,Franck Picard Lecture Notes in Computer Science, 2014, 8452, pp.248-258 Article dans une revue hal-02045097v1
Genomic instability : a stronger prognostic marker than proliferation for early stage luminal breast carcinomas Anne Vincent-Salomon,Vanessa Benhamo,Eleonore Gravier,Guillem Rigaill,Nadège Gruelet al. PLoS ONE, 2013, 8 (10), ⟨10.1371/journal.pone.0076496⟩ Article dans une revue hal-01219550v1
TTK/hMPS1 is an attractive therapeutic target for triple-negative breast cancer Virginie Maire,Celine Baldeyron,Marion Richardson,Bruno Tesson,Anne Vincent-Salomonet al. PLoS ONE, 2013, 8 (6), ⟨10.1371/journal.pone.0063712⟩ Article dans une revue hal-01190560v1
Polo-like Kinase 1: A Potential Therapeutic Option in Combination with Conventional Chemotherapy for the Management of Patients with Triple-Negative Breast Cancer Virginie Maire,Fariba Nemati,Marion Richardson,Anne Vincent-Salomon,Bruno Tessonet al. Cancer Research, 2013, 73 (2), pp.813 - 823. ⟨10.1158/0008-5472.CAN-12-2633⟩ Article dans une revue hal-01190661v1
Joint segmentation, calling, and normalization of multiple CGH profiles Franck Picard,Mark Hoebeke,Guillem Rigaill,Baba Thiam,Stephane Robin Biostatistics, 2011, 12 (3), pp.413-428. ⟨10.1093/biostatistics/kxq076⟩ Article dans une revue hal-01019859v1
Oxidative stress promotes myofibroblast differentiation and tumour spreading Aurore Toullec,Damien Gerald,Gilles Despouy,Brigitte Bourachot,Mélissa Cardonet al. EMBO Molecular Medicine, 2010, 2 (6), pp.211-230. ⟨10.1002/emmm.201000073⟩ Article dans une revue hal-02662620v1
Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays. Tatiana Popova,Elodie Manié,Dominique Stoppa-Lyonnet,Guillem Rigaill,Emmanuel Barillotet al. Genome Biology, 2009, 10 (11), pp.R128. ⟨10.1186/gb-2009-10-11-r128⟩ Article dans une revue inserm-00663915v1
Diaphanous-related formins are required for invadopodia formation and invasion of breast tumor cells Floria Lizarraga,Renaud Poincloux,Marise Romao,Guillaume Montagnac,Gaëlle Le Dezet al. Cancer Research, 2009, 69 (7), pp.2792-2800. ⟨10.1158/0008-5472.CAN-08-3709⟩ Article dans une revue hal-02659942v1
ITALICS: an algorithm for normalization and DNA copy number calling for Affymetrix SNP arrays Guillem Rigaill,Philippe Hupé,Anna Almeida,Philippe La Rosa,Jean-Philippe Meynielet al. Bioinformatics, 2008, 24 (6), pp.768-774. ⟨10.1093/bioinformatics/btn048⟩ Article dans une revue hal-02655786v1
High-resolution mapping of DNA breakpoints to define true recurrences among ipsilateral breast cancers Marc Bollet,Nicolas Servant,Pierre Neuvial,Charles Decraene,Ingrid Lebigotet al. JNCI: Journal of the National Cancer Institute, 2008, 100 (1), pp.48-58. ⟨10.1093/jnci/djm266⟩ Article dans une revue hal-00204833v1
Frequent PTEN genomic alterations and activated phosphatidylinositol 3-kinase pathway in basal-like breast cancer cells Bérengère Marty,Virginie Maire,Eleonore Gravier,Guillem Rigaill,Anne Vincent-Salomonet al. Breast Cancer Research, 2008, 10 (6), pp.1-15. ⟨10.1186/bcr2204⟩ Article dans une revue hal-02666624v1

Logiciel (4)

fst4pg: Genetic Distance Segmentation for Population Genetics Tristan Mary-Huard,Guillem Rigaill 2024, ⟨swh:1:dir:066c394ebf4dceb11cdaa881eba848383d4746a8;origin=https://hal.archives-ouvertes.fr/hal-04499866;visit=swh:1:snp:43f36647203d1f8677274275db14efd82f8accc2;anchor=swh:1:rel:353ee95542e0031d50b4180030898a94a43f5a44;path=/⟩ Logiciel hal-04499866v1
aricode: Efficient Computations of Standard Clustering Comparison Measures Julien Chiquet,Guillem Rigaill,Martina Sundqvist 2020, ⟨swh:1:dir:5611b0b1a170db175583d4243ec8639e0e846f01;origin=https://hal.archives-ouvertes.fr/hal-04479410;visit=swh:1:snp:e98ee67c94e9d082fcfe9a391e0f933e2a575fe9;anchor=swh:1:rel:a1c2ad44b535c5a6bff2d740d9b0278c3d5a55ba;path=/⟩ Logiciel hal-04479410v1
mergeTrees: Aggregating Trees Julien Chiquet,Guillem Rigaill,Audrey Hulot 2019, ⟨swh:1:dir:afc2108cf6953ffa4e3b912b6633ced23e817dc7;origin=https://hal.archives-ouvertes.fr/hal-04500072;visit=swh:1:snp:031d57f01a704f13fb222218fbca370a02148249;anchor=swh:1:rel:90c7a9e908b44d5006c0b0b62309dfea7843e76e;path=/⟩ Logiciel hal-04500072v1
adjclust: Adjacency-Constrained Clustering of a Block-Diagonal Similarity Matrix (R package, available on CRAN) Pierre Neuvial,Christophe Ambroise,Shubham Chaturvedi,Alia Dehman,Michel Koskaset al. 2017 Logiciel hal-02791370v1

Pré-publication, Document de travail (5)

A genome-wide segmentation approach for the detection of selection footprints Tristan Mary-Huard,Guillem Rigaill 2025 Pré-publication, Document de travail (preprint/prepublication) hal-05292880v1
Geometric-Based Pruning Rules For Change Point Detection in Multiple Independent Time Series Liudmila Pishchagina,Guillem Rigaill,Vincent Runge 2023 Pré-publication, Document de travail hal-04132733v1
Wide cross-species RNA-Seq comparison reveals a highly conserved role for Ferroportins in nickel hyperaccumulation in plants Vanesa S Garcia de La Torre,Clarisse Majorel-Loulergue,Dubiel A Gonzalez,Ludivine Soubigou-Taconnat,Guillem Rigaillet al. 2019 Pré-publication, Document de travail hal-02327677v1
New efficient algorithms for multiple change-point detection with kernels Alain Celisse,Guillemette Marot,Morgane Pierre-Jean,Guillem Rigaill 2016 Pré-publication, Document de travail hal-01413230v2
SegAnnot: an R package for fast segmentation of annotated piecewise constant signals Toby Dylan Hocking,Guillem Rigaill 2012 Pré-publication, Document de travail hal-00759129v1

Communication dans un congrès (19)

A genome-wide segmentation approach for the detection of selection footprints Tristan Mary-Huard,Guillem Rigaill Empirism & Theory in Ecology and Evolution (ETEE 2023), Nov 2023, Saclay, France, France Communication dans un congrès hal-05292901v1
Impact of host partial resistance on the gene expression of Phytophthora capsici: consequences for pepper breeding Véronique Lefebvre,Gaëtan Maillot,Emmanuel Szadkowski,Bernard Caromel,Anne Massireet al. 17. Eucarpia Meeting on Genetics and Breeding of Capsicum and Eggplant (2019), Sep 2019, Avignon, France Communication dans un congrès hal-02735621v1
A statistical method to detect abrupt changes in trees. Guillem Rigaill Workshop Change Point Detection: Limit Theorems, Algorithms, and Applications in Life Sciences., Jul 2019, Greifswald, Germany Communication dans un congrès hal-02961195v1
Changepoint detection in the presence of outliers and constraints. Guillem Rigaill Journées du GDR Stat et Santé, Oct 2019, Paris, France Communication dans un congrès hal-02961197v1
Fast tree aggregation for consensus hierarchical clustering: application to multi-omics data analysis Audrey Hulot,Julien Chiquet,Florence Jaffrezic,Guillem Rigaill Statistical Methods for Post-Genomic Data (SMPGD), 2019, Barcelona, Spain Communication dans un congrès hal-02483674v1
Fused-ANOVA : une méthode de clustering en grande dimension Audrey Hulot,Julien Chiquet,Florence Jaffrezic,Guillem Rigaill 50èmes Journées de Statistique, 2018, Palaiseau, France Communication dans un congrès hal-02483532v1
Changepoint detection in the presence of outliers Guillem Rigaill Statistical Scalability Workshop 2018, Apr 2018, Windemere, United Kingdom Communication dans un congrès hal-02961189v1
Adjacency-constrained hierarchical clustering of a band similarity matrix with application to genomics Christophe Ambroise,Alia Dehman,Michel Koskas,Pierre Neuvial,Guillem Rigaillet al. Journée Régionale de Bioinformatique et Biostatistique, Génopole Toulouse, Dec 2018, Toulouse, France Communication dans un congrès hal-02788245v1
The Wnt3a targetome in triple-negative breast cancer cell lines Sylvie Maubant,Bruno Tesson,Virginie Maire,Mengliang Ye,Guillem Rigaillet al. 106. Annual Meeting of the American-Association-for-Cancer-Research (AACR), American Association for Cancer Research (AACR). USA., Apr 2015, Philadelphie, United States. 1 p., ⟨10.1158/1538-7445.AM2015-41⟩ Communication dans un congrès hal-02739832v1
PeakSeg: constrained optimal segmentation and supervised penalty learning for peak detection in count data Toby Hocking,Guillem Rigaill,Guillaume Bourque ICML 2015, 2015, Lille, France Communication dans un congrès hal-02744063v1
Partitionnement optimal et élagage fonctionnel pour la détection de ruptures multiples. Application à des données d’Hybridation Génomique Comparative CGH Robert Maidstone,Paul Fearnhead,Guillem Rigaill 46. Journées de Statistique, Société Française de Statistique (SFdS). FRA., Jun 2014, Rennes, France Communication dans un congrès hal-02744132v1
Weighted fusion penalties for tree inference and its oracle properties Julien Chiquet,Pierre Gutierrez,Guillem Rigaill Workshop MLCB NIPS 2014, Dec 2014, Montréal, Canada Communication dans un congrès hal-01608308v1
On exact multiple changepoint algorithms. Optimal partitioning and functional pruning Guillem Rigaill Time Dynamic Change Point Models and its Applications, Georg-August-Universität Göttingen. DEU., Oct 2014, Göttingen, Germany Communication dans un congrès hal-02792281v1
Fast and parallel algorithm for population-based segmentation of copy-number profiles Guillem Rigaill,Vincent Miele,Franck Picard 10. International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics (CIBB), Jun 2013, Nice, France. 275 p., ⟨10.1007/978-3-319-09042-9_18⟩ Communication dans un congrès hal-02742012v1
On exact multiple changepoint algorithms. Optimal partitioning and functional pruning Guillem Rigaill Inference for Change-Point and Related Processes, University of Cambridge [UK] (CAM). GBR., Jan 2014, Cambridge, United Kingdom Communication dans un congrès hal-02796353v1
Segmentor3isback : an r package for the fast and exact segmentation of seq-data Alice Cleynen,Michel Koskas,Emilie Lebarbier,Guillem Rigaill,Stéphane Robin The R User Conference, Jun 2013, Albacete, Spain Communication dans un congrès hal-01587007v1
Learning Sparse Penalties for Change-Point Detection using Max Margin Interval Regression Guillem Rigaill,Toby Dylan Hocking,Francis Bach,Jean-Philippe Vert ICML 2013 - 30 th International Conference on Machine Learning, Supported by the International Machine Learning Society (IMLS), Jun 2013, Atlanta, United States Communication dans un congrès hal-00824075v1
Algorithme rapide pour la détection optimale des ruptures Guillem Rigaill 42èmes Journées de Statistique, 2010, Marseille, France, France Communication dans un congrès inria-00494813v1
Distribution de l'espace des segmentations Guillem Rigaill,Stéphane Robin,Emilie Lebarbier 41èmes Journées de Statistique, SFdS, Bordeaux, 2009, Bordeaux, France, France Communication dans un congrès inria-00386673v1

Ouvrages (1)

Intégration de données biologiques. Approches informatiques et statistiques Christine Froidevaux,Martin-Magniette Marie-Laure,Guillem Rigaill ISTE, 2022, 978-1789480306 Ouvrages hal-05175499v1

Poster de conférence (7)

Impact de la résistance partielle du piment sur l'expression des gènes de Phytophthora capsici : conséquences pour la création variétale Véronique Lefebvre,Anne Massire,Gaëtan Maillot,Emmanuel Szadkowski,Bernard Caromelet al. 13e Rencontres de Phytopathologie - Mycologie, Journées Jean Chevaugeon, Sep 2022, Aussois (France), France Poster de conférence hal-04133322v1
Adjacency-constrained hierarchical clustering of a band similarity matrix with application to genomics Christophe Ambroise,Alia Dehman,Pierre Neuvial,Guillem Rigaill,Nathalie Vialaneix Statistical Methods for Post-Genomic Data (SMPGD), Jan 2019, Barcelona, Spain. 2019 Poster de conférence hal-02790995v1
PO-435 Proteomic classification of triple negative breast cancer Martina Sundqvist,Leanne de Koning,Guillem Rigaill,Tristan Dubois,Julien Chiquet 25th Biennial Congress of the European Association for Cancer Research, Jun 2018, Amsterdam, Netherlands. ESMO Open, 3, pp.A402, 2018, ⟨10.1136/esmoopen-2018-EACR25.946⟩ Poster de conférence hal-04440537v1
Transcriptomic regulation in pepper during the interaction with &lt;em&gt;Phytophthora capsici&lt;/em&gt; Gaëtan Maillot,Emmanuel Szadkowski,Anne Massire,Jean-Paul Bouchet,Veronique Brunaudet al. 16. Eucarpia Capsicum and Eggplant Meeting, Sep 2016, Kecskemét, Hungary. 2016 Poster de conférence hal-02799453v1
Transcriptomic regulation in pepper during the interaction with Phytophthora capsici. Gaëtan Maillot,Emmanuel Szadkowski,Anne Massire,Jean-Paul Bouchet,Veronique Brunaudet al. 16th Eucarpia Capsicum and Eggplant Meeting, Sep 2016, Kecskemét, Hungary Poster de conférence hal-03551784v1
A fast homotopy algorithm for a large class of weighted classification problems Pierre Gutierrez,Guillem Rigaill,Julien Chiquet MLCB NIPS 2013, Oct 2013, South Lake Thao, United States. 2013 Poster de conférence hal-01601843v1
Integrative approaches for the identification of therapeutic targets in basal-like breast cancer from multi-level molecular data B. M. Tesson,Guillem Rigaill,D. Gentien,S. Roman-Roman,F. Cruzaleguiet al. 22. Biennial Congress of the European Association for Cancer Research, Jul 2012, Barcelone, Spain. Elsevier Science LTD, European Journal of Cancer, 48 (Suppl. 5), 2012, European Journal of Cancer Poster de conférence hal-01189748v1

HDR (1)

Quelques développements statistiques et algorithmiques pour l’analyse de données génomiques Guillem Rigaill Statistiques [math.ST]. Université Paris Saclay, 2020 HDR tel-02955535v1

Chapitre d'ouvrage (3)

A Multiattribute Gaussian Graphical Model for Inferring Multiscale Regulatory Networks: An Application in Breast Cancer Julien Chiquet,Guillem Rigaill,Martina Sundqvist Gene Regulatory Networks, pp.143-160, 2019, ⟨10.1007/978-1-4939-8882-2_6⟩ Chapitre d'ouvrage hal-02961121v1
Bioinformatic analysis of chloroplast gene expression and RNA posttranscriptional maturations using RNA Sequencing Bastien Malbert,Guillem Rigaill,Véronique Brunaud,Claire Lurin,Etienne Delannoy Plastids, 1829, Humana Press Inc., pp.16, 2018, Methods in Molecular Biology, 978-1-4939-8654-5; 978-1-4939-8653-8. ⟨10.1007/978-1-4939-8654-5_19⟩ Chapitre d'ouvrage hal-02788517v1
Exact posterior distributions over the segmentation space and model selection for multiple change-point detection problems Guillem Rigaill,Stephane Robin Proceedings of COMPSTAT'2010: 19th International Conference on Computational StatisticsParis France, August 22-27, 2010 Keynote, Invited and Contributed Papers, Springer - Verlag, 2010, 978-3-7908-2603-6. ⟨10.1007/978-3-7908-2604-3_57⟩ Chapitre d'ouvrage hal-01197523v1

Brevet (2)

Change-point detection with kernel methods : application to DNA copy number signals Morgane Pierre-Jean,Guillemette Marot,Rigaill Guillem,Alain Celisse France, Patent n° : 00000000000000. 2013 Brevet hal-00943413v1
Détection de ruptures à partir de méthodes à noyaux Morgane Pierre-Jean,Guillemette Marot,Guillem Rigaill,Alain Celisse United Kingdom, Patent n° : 0000000. 2013 Brevet hal-00943423v1

Thèse (1)

Statistical and algorithmic developments for the analysis of Triple Negative Breast Cancers Guillem Rigaill Applications [stat.AP]. AgroParisTech, 2010. English. ⟨NNT : 2010AGPT0066⟩ Thèse pastel-00593939v1