Guislaine Refrégier

Publications

Article dans une revue (45)

Understanding the key challenges in tuberculosis drug discovery: what does the future hold? Rima Zein-Eddine,Masoud Ramuz,Guislaine Refrégier,Johannes F Lutzeyer,Alexey Aleksandrovet al. Expert Opinion on Drug Discovery, 2025, 20 (9), pp.1115-1130. ⟨10.1080/17460441.2025.2531229⟩ Article dans une revue (article de synthèse) hal-05229900v1
Newly Identified Mycobacterium africanum Lineage 10, Central Africa Christophe Guyeux,Gaetan Senelle,Adrien Le Meur,Philip Supply,Cyril Gaudinet al. Emerging Infectious Diseases, 2024, 30 (3), ⟨10.3201/eid3003.231466⟩ Article dans une revue hal-04489082v1
The future of CRISPR in Mycobacterium tuberculosis infection Rima Zein Eddine,Guislaine Refrégier,Jorge Cervantes,Noemí Kaoru Yokobori Journal of Biomedical Science, 2023, 30 (1), pp.34. ⟨10.1186/s12929-023-00932-4⟩ Article dans une revue (article de synthèse) hal-04117515v1
The paradoxes of Mycobacterium tuberculosis molecular evolution and consequences for the inference of tuberculosis emergence date Rima Zein Eddine,F. Hak,A. Le Meur,C. Genestet,O. Dumitrescuet al. Tuberculosis, 2023, 143, pp.102378. ⟨10.1016/j.tube.2023.102378⟩ Article dans une revue (article de synthèse) hal-04311241v1
Towards a better understanding of the long-lasting evolutionary history of Mycobacterium tuberculosis Gaëtan Senelle,Christophe Guyeux,Guislaine Refrégier,Christophe Sola Tuberculosis, 2023, 143, pp.102374 (4) Article dans une revue hal-04456569v1
Towards a better understanding of the long-lasting evolutionary history of Mycobacterium tuberculosis Gaetan Senelle,Christophe Guyeux,Guislaine Refrégier,Christophe Sola Tuberculosis, 2023, 143 (Suppl), pp.102374. ⟨10.1016/j.tube.2023.102374⟩ Article dans une revue hal-04489118v1
Comparison of in silico predicted Mycobacterium tuberculosis spoligotypes and lineages from whole genome sequencing data Taane G Clark,Gary Napier,David Couvin,Guislaine Refrégier,Christophe Guyeuxet al. Scientific Reports, 2023, 13, pp.11368 (7). ⟨10.1038/s41598-023-38384-3⟩ Article dans une revue hal-04224785v1
Connection between two historical tuberculosis outbreak sites in Japan, Honshu, by a new ancestral Mycobacterium tuberculosis L2 sublineage Christophe Guyeux,Gaetan Senelle,Guislaine Refrégier,Florence Bretelle-Establet,Emmanuelle Cambauet al. Epidemiology and Infection, 2022, 150, pp.e56. ⟨10.1017/S0950268822000048⟩ Article dans une revue hal-03924496v1
Investigating the Diversity of Tuberculosis Spoligotypes with Dimensionality Reduction and Graph Theory Gaëtan Senelle,Christophe Guyeux,Guislaine Refrégier,Christophe Sola Genes, 2022, 13 (12), pp.2328 (9). ⟨10.3390/genes13122328⟩ Article dans une revue hal-03932845v1
Mycobacterium tuberculosis genetic features associated with pulmonary tuberculosis severity Charlotte Genestet,Guislaine Refrégier,Elisabeth Hodille,Rima Zein-Eddine,Adrien Le Meuret al. International Journal of Infectious Diseases, 2022, 125, pp.74-83. ⟨10.1016/j.ijid.2022.10.026⟩ Article dans une revue hal-03836738v1
Consistency of Mycobacterium tuberculosis Complex Spoligotyping between the Membrane-Based Method and In Silico Approach Charlotte Genestet,Elisabeth Hodille,Albin Bernard,Maxime Vallée,Gérard Linaet al. Microbiology Spectrum, 2022, 10 (3), ⟨10.1128/spectrum.00223-22⟩ Article dans une revue hal-04245098v1
CRISPRbuilder-TB: “CRISPR-builder for tuberculosis”. Exhaustive reconstruction of the CRISPR locus in mycobacterium tuberculosis complex using SRA Christophe Guyeux,Christophe Sola,Camille Noûs,Guislaine Refrégier PLoS Computational Biology, 2021, 17 (3), pp.e1008500. ⟨10.1371/journal.pcbi.1008500⟩ Article dans une revue hal-04244566v1
Molecular epidemiology of Mycobacterium tuberculosis in Brazil before the whole genome sequencing era: a literature review Emilyn Costa Conceição,Richard Steiner Salvato,Karen Machado Gomes,Arthur Emil dos Santos Guimarães,Marília Lima da Conceiçãoet al. Memórias do Instituto Oswaldo Cruz, 2021, 116, ⟨10.1590/0074-02760200517⟩ Article dans une revue hal-04245111v1
Prediction of the hidden genotype of mixed infection strains in Iranian tuberculosis patients Mansour Kargarpour Kamakoli,Ghazaleh Farmanfarmaei,Morteza Masoumi,Sharareh Khanipour,Safoora Gharibzadehet al. International Journal of Infectious Diseases, 2020, ⟨10.1016/j.ijid.2020.03.056⟩ Article dans une revue hal-02542669v1
Unexpected diversity of CRISPR unveils some evolutionary patterns of repeated sequences in Mycobacterium tuberculosis Guislaine Refrégier,Christophe Sola,Christophe Guyeux BMC Genomics, 2020, 21 (1), pp.841. ⟨10.1186/s12864-020-07178-6⟩ Article dans une revue hal-03102328v1
Spoligotyping of Mycobacterium tuberculosis isolates using Luminex®-based method in Lebanon Khaldoun Masoud,George F. Araj,Lina Reslan,Sukayna Fadlallah,Michel Wehbeet al. Journal of Infection in Developing Countries, 2020, 14 (8), pp.878--885. ⟨10.3855/jidc.12072⟩ Article dans une revue hal-02944245v1
NTF-RINT, a new method for the epidemiological surveillance of MDR Mycobacterium tuberculosis L2/Beijing strains Bernice J. Klotoe,Natalia Kurepina,Elena Zholdibayeva,S. Panaiotov,Barry N. Kreiswirthet al. Tuberculosis, 2020, 120, pp.101894. ⟨10.1016/j.tube.2019.101894⟩ Article dans une revue hal-02502306v1
Mycobacterium tuberculosis lineage 1 genetic diversity in Pará, Brazil, suggests common ancestry with east-African isolates potentially linked to historical slave trade Emilyn Costa Conceição,Guislaine Refrégier,Harrison Magdinier Gomes,Xavier Olessa-Daragon,Francesc Collet al. Infection, Genetics and Evolution, 2019, 73, pp.337--341. ⟨10.1016/j.meegid.2019.06.001⟩ Article dans une revue hal-02169940v1
Diversity of Mycobacterium tuberculosis in the Middle Fly District of Western Province, Papua New Guinea: microbead-based spoligotyping using DNA from Ziehl-Neelsen-stained microscopy preparations Vanina Guernier-Cambert,Tanya Diefenbach-Elstob,Bernice J. Klotoe,Graham Burgess,Daniel Pelowaet al. Scientific Reports, 2019, 9 (1), pp.15549. ⟨10.1038/s41598-019-51892-5⟩ Article dans une revue hal-02345362v1
Genomic characterization of MDR/XDR-TB in Kazakhstan by a combination of high-throughput methods predominantly shows the ongoing transmission of L2/Beijing 94-32 central Asian/Russian clusters B. J. Klotoe,S. Kacimi,E. Costa-Conceicão,H. M. Gomes,R. B. Barcelloset al. BMC Infectious Diseases, 2019, 19 (1), pp.553. ⟨10.1186/s12879-019-4201-2⟩ Article dans une revue hal-02170568v1
Reverse line probe assay for cheap detection of Single Nucleotide Polymorphisms in Mycobacterium tuberculosis Memona Yasmin,Guislaine Refrégier,Rubina Tabassum Siddiqui,Rizwan Iqbal,Shahid Ahmad Abbasiet al. Tuberculosis, 2018, 110, pp.52--55. ⟨10.1016/j.tube.2018.03.007⟩ Article dans une revue hal-02185061v1
TB-EFI, a novel 18-Plex microbead-based method for prediction of second-line drugs and ethambutol resistance in Mycobacterium tuberculosis complex Bernice J. Klotoe,Barbara Molina-Moya,Harrison Magdinier Gomes,Michel K. Gomgnimbou,Lorenna Oliveira Suzarteet al. Journal of Microbiological Methods, 2018, 152, pp.10--17. ⟨10.1016/j.mimet.2018.06.003⟩ Article dans une revue hal-02179879v1
Correlation between the BACTEC MGIT 960 culture system with Genotype MTBDRplus and TB-SPRINT in multidrug resistant Mycobacterium tuberculosis clinical isolates from Brazil Nayanne Gama Teixeira Dantas,Phillip Noel Suffys,Wânia da Silva Carvalho,Harrison Magdinier Gomes,Isabela Neves De Almeidaet al. Memórias do Instituto Oswaldo Cruz, 2017, 112 (11), pp.769--774. ⟨10.1590/0074-02760170062⟩ Article dans une revue hal-02191696v1
Molecular Characterization of Mycobacterium tuberculosis Strains with TB-SPRINT Barbara Molina-Moya,Michel Kiréopori Gomgnimbou,Carmen Lafoz,Alicia Lacoma,Cristina Pratet al. American Journal of Tropical Medicine and Hygiene, 2017, 97 (3), pp.806--809. ⟨10.4269/ajtmh.16-0782⟩ Article dans une revue hal-02390044v1
Assessment of tuberculosis spatial hotspot areas in Antananarivo, Madagascar, by combining spatial analysis and genotyping Noël Harijaona Ratovonirina,Niaina Rakotosamimanana,Solohery Lalaina Razafimahatratra,Mamy Serge Raherison,Guislaine Refrégieret al. BMC Infectious Diseases, 2017, 17 (1), pp.562. ⟨10.1186/s12879-017-2653-9⟩ Article dans une revue pasteur-01649214v1
Turkish and Japanese Mycobacterium tuberculosis sublineages share a remote common ancestor. Guislaine Refrégier,Edgar Abadia,Tomoshige Matsumoto,Hiromi Ano,Tetsuya Takashimaet al. Infection, Genetics and Evolution, 2016, 45, pp.461-473. ⟨10.1016/j.meegid.2016.10.009⟩ Article dans une revue hal-01439404v1
Quick and cheap MIRU-VNTR typing of Mycobacterium tuberculosis species complex using duplex PCR. Memona Yasmin,Stéphanie Le Moullec,Rubina Tabassum Siddiqui,Jessica de Beer,Christophe Solaet al. Tuberculosis, 2016, 101, pp.160-163. ⟨10.1016/j.tube.2016.10.003⟩ Article dans une revue hal-01439321v1
Genetic diversity and molecular epidemiology of multidrug-resistant Mycobacterium tuberculosis in Minas Gerais State, Brazil. Nayanne Gama Teixeira Dantas,Phillip Noel Suffys,Wânia da Silva Carvalho,Harrison Magdinier Gomes,Isabela Neves de Almeidaet al. BMC Infectious Diseases, 2015, 15 (1), pp.306. ⟨10.1186/s12879-015-1057-y⟩ Article dans une revue hal-01430798v1
Genomics and Machine Learning for Taxonomy Consensus: The Mycobacterium tuberculosis Complex Paradigm Jérôme Azé,Christophe Sola,Jian Zhang,Florian Lafosse-Marin,Memona Yasminet al. PLoS ONE, 2015, 10 (7), pp.210-218. ⟨10.1371/journal.pone.0130912⟩ Article dans une revue lirmm-01348924v1
Validation of a microbead-based format for spoligotyping of Legionella pneumophila Michel Kiréopori Gomgnimbou,Christophe Ginevra,Caroline Peron-Cane,Margaux Versapuech,Guislaine Refrégieret al. Journal of Clinical Microbiology, 2014, 52 (7), pp.2410-2415. ⟨10.1128/JCM.00219-14⟩ Article dans une revue hal-01909052v1
PERFORMANCE OF A HYBRID FUNGAL PATHOGEN ON PURE-SPECIES AND HYBRID HOST PLANTS Amanda K Gibson,Guislaine Refrégier,Michael E Hood,Tatiana Giraud International Journal of Plant Sciences, 2014, ⟨10.1086/676621⟩ Article dans une revue hal-01302688v1
Spoligoriftyping,&quot; a dual-priming-oligonucleotide-based direct-hybridization assay for tuberculosis control with a multianalyte microbead-based hybridization system. Michel Kiréopori Gomgnimbou,Edgar Abadia,Jian Zhang,Guislaine Refrégier,Stefan Panaiotovet al. Journal of Clinical Microbiology, 2012, 50 (10), pp.3172-9. ⟨10.1128/JCM.00976-12⟩ Article dans une revue hal-00763191v1
Spoligotyping of Mycobacterium africanum, Burkina Faso. Michel K Gomgnimbou,Guislaine Refrégier,Serge P Diagbouga,Sanou Adama,Antoinette Kaboréet al. Emerging Infectious Diseases, 2012, 18 (1), pp.117-9. ⟨10.3201/eid1801.110275⟩ Article dans une revue hal-00763744v1
A molecular epidemiological and genetic diversity study of tuberculosis in Ibadan, Nnewi and Abuja, Nigeria. Lovett Lawson,Jian Zhang,Michel K Gomgnimbou,Saddiq T Abdurrahman,Stéphanie Le Moullecet al. PLoS ONE, 2012, 7 (6), pp.e38409. ⟨10.1371/journal.pone.0038409⟩ Article dans une revue hal-00763747v1
Using affinity propagation for identifying subspecies among clonal organisms: lessons from M. tuberculosis Claudio Borile,Mathieu Labarre,Silvio Franz,Christophe Sola,Guislaine Refrégier BMC Bioinformatics, 2011, 12 (1), pp.224. ⟨10.1186/1471-2105-12-224⟩ Article dans une revue pasteur-00670608v1
A first assessment of the genetic diversity of Mycobacterium tuberculosis complex in Cambodia. Jian Zhang,Seiha Heng,Stéphanie Le Moullec,Guislaine Refregier,Brigitte Gicquelet al. BMC Infectious Diseases, 2011, 11 (1), pp.42. ⟨10.1186/1471-2334-11-42⟩ Article dans une revue pasteur-00670614v1
The use of microbead-based spoligotyping for Mycobacterium tuberculosis complex to evaluate the quality of the conventional method: Providing guidelines for Quality Assurance when working on membranes Edgar Abadia,Jian Zhang,Viviana Ritacco,Kristin Kremer,Raymond Ruimyet al. BMC Infectious Diseases, 2011, 11 (1), pp.110. ⟨10.1186/1471-2334-11-110⟩ Article dans une revue pasteur-00670610v1
Mycobacterium tuberculosis complex CRISPR genotyping: improving efficiency, throughput and discriminative power of 'spoligotyping' with new spacers and a microbead-based hybridization assay. Jian Zhang,Edgar Abadia,Guislaine Refregier,Silva Tafaj,Maria Laura Boschiroliet al. Journal of Medical Microbiology, 2010, 59 (Pt 3), pp.285-94. ⟨10.1099/jmm.0.016949-0⟩ Article dans une revue hal-00527223v1
No Evidence of Reproductive Character Displacement between Two Sister Fungal Species Causing Anther Smut Disease in Silene Guislaine Refrégier,Michael e. Hood,Tatiana Giraud International Journal of Plant Sciences, 2010, 171 (8), pp.847-859. ⟨10.1086/655867⟩ Article dans une revue hal-02333052v1
Rapidly evolving genes in pathogens: Methods for detecting positive selection and examples among fungi, bacteria, viruses and protists Gabriela Aguileta,Guislaine Refrégier,Roxana Yockteng,Elisabeth Fournier,Tatiana Giraud Infection, Genetics and Evolution, 2009, 9 (4), pp.656-670. ⟨10.1016/j.meegid.2009.03.010⟩ Article dans une revue (article de synthèse) istex hal-02333119v1
Cophylogeny of the anther smut fungi and their caryophyllaceous hosts: Prevalence of host shifts and importance of delimiting parasite species for inferring cospeciation Guislaine Refrégier,Mickael Le Gac,Florian Jabbour,Alex Widmer,Jacqui A. Shykoffet al. BMC Evolutionary Biology, 2008, 8 (1), pp.100. ⟨10.1186/1471-2148-8-100⟩ Article dans une revue hal-02333196v1
Speciation in fungi Tatiana Giraud,Guislaine Refrégier,Mickaël Le Gac,Damien M. de Vienne,Michael E Hood Fungal Genetics and Biology, 2008, 45 (6), pp.791--802. ⟨10.1016/j.fgb.2008.02.001⟩ Article dans une revue istex hal-01800069v1
Interaction between Wall Deposition and Cell Elongation in Dark-Grown Hypocotyl Cells in Arabidopsis Guislaine Refrégier,Sandra Pelletier,Danielle Jaillard,Herman Höfte Plant Physiology, 2004, 135 (2), pp.959-968. ⟨10.1104/pp.104.038711⟩ Article dans une revue hal-04373076v1
Resistance against herbicide isoxaben and cellulose deficiency caused by distinct mutations in same cellulose synthase isoform CESA6 Thierry T. Desprez,Samantha S. Vernhettes,Mathilde Fagard,Guislaine Refregier,Thierry Desnoset al. Plant Physiology, 2002, 128 (2), pp.482-490. ⟨10.1104/pp.010822⟩ Article dans une revue hal-02681400v1
PROCUSTE1 encodes a cellulose synthase required for normal cell elongation specifically in roots and dark-grown hypocotyls of Arabidopsis Mathilde Fagard,Thierry Desnos,Thierry T. Desprez,Florence Goubet,Guislaine Refregieret al. The Plant cell, 2000, 12 (12), pp.2409-2423. ⟨10.1105/tpc.12.12.2409⟩ Article dans une revue hal-02698876v1

Communication dans un congrès (3)

TB-ANNOTATOR: A scalable web application that allows in-depth analysis of very large sets of publicly available Mycobacterium tuberculosis complex genomes Gaëtan Senelle,Christophe Guyeux,Emmanuelle Cambau,Guislaine Refrégier,Christophe Sola Annual Congress of the European Society of Mycobacteriology, Jun 2023, Tirana, Albania Communication dans un congrès hal-04224815v1
The growing chaos of tuberculosis population genomics at the era of 'Big Data’: sorting out the wheat from the chaff Christophe Sola,Gaëtan Senelle,K La,T Billard-Pomares,J Marinet al. Annual Congress of the European Society of Mycobacteriology, Jun 2022, Bologna, Italy Communication dans un congrès hal-03812995v1
CRISPRbuilder-TB, reconstructing the CRISPR-Cas Locus of Mycobacterium tuberculosis complex using short reads archives (SRA) and tracking genome evolution Christophe Guyeux,Christophe Sola,Guislaine Refrégier Annual Congress of the European Society of Mycobacteriology, Jun 2021, Online (Electronic Conference), Unknown Region Communication dans un congrès hal-03814550v1

Chapitre d'ouvrage (2)

Theory and examples of reciprocal influence between hosts and pathogens, from short-term to long term interactions: coevolution, cospeciation and pathogen speciation following host shifts Aurélien Tellier,Damien M. de Vienne,Tatiana Giraud,Michael Hood,Guislaine Refrégier Annette W. Barton. Host-Pathogen Interactions: Genetics, Immunology, and Physiology, Nova Science Publishers, Inc.; 1 edition (September 1, 2010), 2010, Immunology and Immune System Disorders, 978-1608762866 Chapitre d'ouvrage hal-02326400v1
Chapter 3 Genome Evolution in Plant Pathogenic and Symbiotic Fungi Gabriela Aguileta,Michael E Hood,Guislaine Refrégier,Tatiana Giraud Genome Evolution in Plant Pathogenic and Symbiotic Fungi, pp.151-193, 2009, ⟨10.1016/S0065-2296(08)00603-4⟩ Chapitre d'ouvrage hal-02333150v1

Pré-publication, Document de travail (3)

TB-annotator: a scalable web application that allows in-depth analysis of very large sets of publicly available Mycobacterium tuberculosis complex genomes Gaetan Senelle,Christophe Guyeux,Guislaine Refrégier,Christophe Sola 2023 Pré-publication, Document de travail hal-04244541v1
An updated evolutionary history and taxonomy of Mycobacterium tuberculosis lineage 5, also called M. africanum Muhammed Rabiu Sahal,Gaetan Senelle,Kevin La,Barbara Molina-Moya,Jose Dominguezet al. 2023 Pré-publication, Document de travail hal-04244526v1
Within-host genetic micro-diversity of Mycobacterium tuberculosis and the link with tuberculosis disease features Charlotte Genestet,Elisabeth Hodille,François Massol,Guislaine Refrégier,Alexia Barbryet al. 2021 Pré-publication, Document de travail hal-03433572v1