Helene MORLON

78
Documents

Publications

Publications

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Macroevolution of the plant–hummingbird pollination system

Elisa Barreto , Mannfred M A Boehm , Ezgi Ogutcen , Stefan Abrahamczyk , Michael Kessler et al.
Biological Reviews, In press, ⟨10.1111/brv.13094⟩
Article dans une revue hal-04666271 v1
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Telling mutualistic and antagonistic ecological networks apart by learning their multiscale structure

Benoît Pichon , Rémy Le Goff , Hélène Morlon , Benoît Perez-Lamarque
Methods in Ecology and Evolution, 2024, 15 (6), pp.1113-1128. ⟨10.1111/2041-210X.14328⟩
Article dans une revue hal-04745020 v1
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Speciation completion rates have limited impact on macroevolutionary diversification

Pierre Veron , Jérémy Andréoletti , Tatiana Giraud , Hélène Morlon
Philosophical Transactions of the Royal Society B: Biological Sciences, 2024, A mathematical theory of evolution’: phylogenetic models dating back 100 years’, 380 (1919), pp.20230317. ⟨10.1098/rstb.2023.0317⟩
Article dans une revue hal-04728750 v2
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Phylogenetic Insights into Diversification

Hélène Morlon , Jérémy Andréoletti , Joëlle Barido-Sottani , Sophia Lambert , Benoît Perez-Lamarque et al.
Annual Review of Ecology, Evolution, and Systematics, 2024, 55, pp.1-21. ⟨10.1146/annurev-ecolsys-102722-020508⟩
Article dans une revue (article de synthèse) hal-04631083 v1
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Distinguishing cophylogenetic signal from phylogenetic congruence clarifies the interplay between evolutionary history and species interactions

Benoît Perez-Lamarque , Hélène Morlon
Systematic Biology, 2024, ⟨10.1093/sysbio/syae013⟩
Article dans une revue hal-04507008 v1
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Imbalanced speciation pulses sustain the radiation of mammals

Ignacio Quintero , Nicolas Lartillot , Hélène Morlon
Science, 2024, 384 (6699), pp.1007-1012. ⟨10.1126/science.adj2793⟩
Article dans une revue hal-03866088 v2
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Limited ecological opportunity influences the tempo of morphological evolution in birds

Jonathan P Drury , Julien Clavel , Joseph A Tobias , Jonathan Rolland , Catherine Sheard et al.
Current Biology, 2024, 34, pp.1-9. ⟨10.1016/j.cub.2023.12.055⟩
Article dans une revue hal-04406014 v1
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The ClaDS rate-heterogeneous birth–death prior for full phylogenetic inference in BEAST2

Joëlle Barido-Sottani , Hélène Morlon
Systematic Biology, 2023, 72 (5), pp.1180-1187. ⟨10.1093/sysbio/syad027⟩
Article dans une revue hal-04378658 v1
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Exploring congruent diversification histories with flexibility and parsimony

Jérémy Andréoletti , Hélène Morlon
Methods in Ecology and Evolution, 2023, 14 (12), pp.2931-2941. ⟨10.1101/2023.07.26.550618⟩
Article dans une revue hal-04173637 v1
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The build-up of the present-day tropical diversity of tetrapods

Ignacio Quintero , Michael Landis , Walter Jetz , Hélène Morlon
Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (20), ⟨10.1073/pnas.2220672120⟩
Article dans une revue hal-04294987 v1
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Towards a genetic theory of island biogeography: Inferring processes from multidimensional community‐scale data

Isaac Overcast , Guillaume Achaz , R. Aguilée , Carmelo Andújar , Paula Arribas et al.
Global Ecology and Biogeography, 2023, 32, pp.4 - 23. ⟨10.1111/geb.13604⟩
Article dans une revue (article de synthèse) inserm-04270149 v1
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Deep Learning from Phylogenies for Diversification Analyses

Sophia Lambert , Jakub Voznica , Hélène Morlon
Systematic Biology, 2023, 72 (6), pp.1262-1279. ⟨10.1093/sysbio/syad044⟩
Article dans une revue hal-04294867 v1
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Phylogenetic Comparative Approach Reveals Evolutionary Conservatism, Ancestral Composition, and Integration of Vertebrate Gut Microbiota

Benoît Perez-Lamarque , Guilhem Sommeria-Klein , Loréna Duret , Hélène Morlon
Molecular Biology and Evolution, 2023, 40 (7), ⟨10.1093/molbev/msad144⟩
Article dans une revue hal-04294906 v1
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Phylogenetic comparative approach reveals evolutionary conservatism, ancestral composition, and integration of vertebrate gut microbiota

Benoît Perez-Lamarque , Guilhem Sommeria-Klein , Loréna Duret , Hélène Morlon
Molecular Biology and Evolution, 2023, ⟨10.1093/molbev/msad144⟩
Article dans une revue hal-04133633 v1
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Inferring the ecological and evolutionary determinants of community genetic diversity

Isaac Overcast , Víctor Noguerales , Emmanouil Meramveliotakis , Carmelo Andújar , Paula Arribas et al.
Molecular Ecology, 2023, ⟨10.1111/mec.16958⟩
Article dans une revue hal-04295176 v1
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Estimating clade‐specific diversification rates and palaeodiversity dynamics from reconstructed phylogenies

Nathan Mazet , Hélène Morlon , Pierre‐henri Fabre , Fabien Condamine
Methods in Ecology and Evolution, 2023, 14 (10), pp.2575-2591. ⟨10.1111/2041-210X.14195⟩
Article dans une revue hal-04262564 v1
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Comparing different computational approaches for detecting long‐term vertical transmission in host‐associated microbiota

Benoît Perez‐lamarque , Hélène Morlon
Molecular Ecology, In press, ⟨10.1111/mec.16681⟩
Article dans une revue hal-04295204 v1

Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods

Paula Arribas , Carmelo Andújar , Kristine Bohmann , Jeremy Dewaard , Evan Economo et al.
GigaScience, 2022, 11, ⟨10.1093/gigascience/giac065⟩
Article dans une revue hal-03873057 v1
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Studying speciation and extinction dynamics from phylogenies: addressing identifiability issues

Hélène Morlon , Stéphane Robin , Florian Hartig
Trends in Ecology & Evolution, 2022, 37 (6), pp.497-506. ⟨10.1016/j.tree.2022.02.004⟩
Article dans une revue hal-03671677 v1
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Limited Evidence for Microbial Transmission in the Phylosymbiosis between Hawaiian Spiders and Their Microbiota

Benoît Perez-Lamarque , Henrik Krehenwinkel , Rosemary G Gillespie , Hélène Morlon
Article dans une revue hal-03544270 v1
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Do closely related species interact with similar partners? Testing for phylogenetic signal in bipartite interaction networks

Benoît Perez-Lamarque , Odile Maliet , Benoît Pichon , Marc-André Selosse , Florent Martos et al.
Peer Community Journal, 2022, 2, pp.e59. ⟨10.24072/pcjournal.179⟩
Article dans une revue hal-04295780 v1
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Analyzing diversification dynamics using barcoding data: the case of an obligate mycorrhizal symbiont

Benoît Perez-Lamarque , Maarja Öpik , Odile Maliet , Ana Afonso Silva , Marc- André Selosse et al.
Molecular Ecology, 2022, ⟨10.1111/mec.16478⟩
Article dans une revue hal-03650682 v1
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Priorities for ocean microbiome research

Andre Abreu , Etienne Bourgois , Adam Gristwood , Romain Troublé , Silvia Acinas et al.
Nature Microbiology, 2022, 7 (7), pp.937-947. ⟨10.1038/s41564-022-01145-5⟩
Article dans une revue hal-03781942 v1

Collective and harmonized high throughput barcoding of insular arthropod biodiversity: Toward a Genomic Observatories Network for islands

Brent Emerson , Paulo Borges , Pedro Cardoso , Peter Convey , Jeremy Dewaard et al.
Molecular Ecology, 2022, 7 (7), pp.937-947. ⟨10.1111/mec.16683⟩
Article dans une revue hal-03873067 v1

Comparing different computational approaches for detecting long‐term vertical transmission in host‐associated microbiota

Benoît Perez-Lamarque , Hélène Morlon
Molecular Ecology, 2022, ⟨10.1111/mec.16681⟩
Article dans une revue hal-03873071 v1
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Structure and specialization of mycorrhizal networks in phylogenetically diverse tropical communities

Benoît Perez-Lamarque , Rémi Petrolli , Christine Strullu-Derrien , Dominique Strasberg , Hélène Morlon et al.
Environmental Microbiome, 2022, 17 (1), pp.38. ⟨10.1186/s40793-022-00434-0⟩
Article dans une revue hal-03735689 v1

Global drivers of eukaryotic plankton biogeography in the sunlit ocean

Guilhem Sommeria-Klein , Romain Watteaux , Federico Ibarbalz , Juan José Pierella Karlusich , Daniele Iudicone et al.
Science, 2021, 374 (6567), pp.594-599. ⟨10.1126/science.abb3717⟩
Article dans une revue hal-03453705 v1
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Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes

Richard G Dorrell , Adrien Villain , Benoît Perez-Lamarque , Guillemette Audren de Kerdrel , Giselle Mccallum et al.
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (4), ⟨10.1073/pnas.2009974118/-/DCSupplemental⟩
Article dans une revue mnhn-03969507 v1

Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes

Richard Dorrell , Adrien Villain , Benoît Perez-Lamarque , Guillemette Audren de Kerdrel , Giselle Mccallum et al.
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (4), ⟨10.1073/pnas.2009974118⟩
Article dans une revue (article de synthèse) cea-04321619 v1

Connecting high‐throughput biodiversity inventories: Opportunities for a site‐based genomic framework for global integration and synthesis

Paula Arribas , Carmelo Andújar , Martin Bidartondo , Kristine Bohmann , Éric Coissac et al.
Molecular Ecology, 2021, 30 (5), pp.1120-1135. ⟨10.1111/mec.15797⟩
Article dans une revue hal-03358499 v1

Fast and Accurate Estimation of Species-Specific Diversification Rates Using Data Augmentation

Odile Maliet , Hélène Morlon
Systematic Biology, 2021, ⟨10.1093/sysbio/syab055⟩
Article dans une revue hal-03358524 v1
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Tempo and mode of morphological evolution are decoupled from latitude in birds

Jonathan P Drury , Julien Clavel , Joseph A Tobias , Jonathan Rolland , Catherine Sheard et al.
PLoS Biology, 2021, 19 (8), pp.e3001270. ⟨10.1371/journal.pbio.3001270⟩
Article dans une revue hal-03347737 v1
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Model-Based Inference of Punctuated Molecular Evolution

Marc Manceau , Julie Marin , Hélène Morlon , Amaury Lambert
Molecular Biology and Evolution, 2020, 37 (11), pp.3308-3323. ⟨10.1093/molbev/msaa144⟩
Article dans une revue hal-03089352 v1
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An individual‐based model for the eco‐evolutionary emergence of bipartite interaction networks

Odile Maliet , Nicolas Loeuille , Hélène Morlon
Ecology Letters, 2020, 23 (11), pp.1623-1634. ⟨10.1111/ele.13592⟩
Article dans une revue hal-03089217 v1
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Reliable Phylogenetic Regressions for Multivariate Comparative Data: Illustration with the MANOVA and Application to the Effect of Diet on Mandible Morphology in Phyllostomid Bats

Julien Clavel , Hélène Morlon
Systematic Biology, 2020, 69 (5), pp.927-943. ⟨10.1093/sysbio/syaa010⟩
Article dans une revue hal-02505243 v1
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Cheating in arbuscular mycorrhizal mutualism: a network and phylogenetic analysis of mycoheterotrophy

Benoît Perez‐lamarque , Marc‐andré Selosse , Maarja Öpik , Hélène Morlon , Florent Martos
New Phytologist, 2020, 226 (6), pp.1822-1835. ⟨10.1111/nph.16474⟩
Article dans une revue hal-02877204 v1
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Response to Technical Comment 'A cautionary note for users of linear diversification dependencies

Hélène Morlon , Jonathan Rolland , Fabien Condamine
Ecology Letters, 2020, 23, pp.1172-1174. ⟨10.1111/ele.13513⟩
Article dans une revue hal-02520611 v1
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Diversity hotspots: Coldspots of speciation?

Hélène Morlon
Science, 2020, 370 (6522), pp.1268-1269. ⟨10.1126/science.abf0830⟩
Article dans une revue hal-03089212 v1
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Understanding the effect of competition during evolutionary radiations: an integrated model of phenotypic and species diversification

Leandro Aristide , Hélène Morlon
Ecology Letters, 2019, ⟨10.1111/ele.13385⟩
Article dans une revue hal-02408038 v1
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Embracing heterogeneity: coalescing the Tree of Life and the future of phylogenomics

Gustavo A Bravo , Alexandre Antonelli , Christine D Bacon , Krzysztof Bartoszek , Mozes P K Blom et al.
PeerJ, 2019, 7, pp.e6399. ⟨10.7717/peerj.6399⟩
Article dans une revue hal-02408182 v1
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Characterizing and Comparing Phylogenetic Trait Data from Their Normalized Laplacian Spectrum

Eric Lewitus , Leandro Aristide , Hélène Morlon
Systematic Biology, In press, ⟨10.1093/sysbio/syz061⟩
Article dans une revue hal-02407709 v1

Assessing the causes of diversification slowdowns: temperature‐dependent and diversity‐dependent models receive equivalent support

Fabien Condamine , Jonathan Rolland , Hélène Morlon
Ecology Letters, 2019, 22 (11), pp.1900-1912. ⟨10.1111/ele.13382⟩
Article dans une revue hal-02323724 v1

Which frugivory‐related traits facilitated historical long‐distance dispersal in the custard apple family (Annonaceae)?

Renske Onstein , W. Daniel Kissling , Lars Chatrou , Thomas Couvreur , Hélène Morlon et al.
Journal of Biogeography, 2019, 46 (8), pp.1874-1888. ⟨10.1111/jbi.13552⟩
Article dans une revue hal-04391193 v1
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A Penalized Likelihood Framework for High-Dimensional Phylogenetic Comparative Methods and an Application to New-World Monkeys Brain Evolution

Julien Clavel , Leandro Aristide , Hélène Morlon
Systematic Biology, 2019, 68 (1), pp.93-116. ⟨10.1093/sysbio/syy045⟩
Article dans une revue hal-02408141 v1
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Estimating Diversity Through Time using Molecular Phylogenies: Old and Species-Poor Frog Families are the Remnants of a Diverse Past

O Billaud , D S Moen , Todd L. Parsons , Hélène Morlon
Systematic Biology, 2019, ⟨10.1093/sysbio/syz057⟩
Article dans une revue hal-02407752 v1
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Characterizing symbiont inheritance during host–microbiota evolution: Application to the great apes gut microbiota

Benoît Perez‐lamarque , Hélène Morlon
Molecular Ecology Resources, In press, ⟨10.1111/1755-0998.13063⟩
Article dans une revue hal-02280964 v1
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A model with many small shifts for estimating species-specific diversification rates

Odile Maliet , Florian Hartig , Hélène Morlon
Nature Ecology & Evolution, 2019, 3 (7), pp.1086-1092. ⟨10.1038/s41559-019-0908-0⟩
Article dans une revue hal-02408107 v1
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Which frugivory‐related traits facilitated historical long‐distance dispersal in the custard apple family (Annonaceae) ?

Renske E Onstein , W. Daniel Daniel Kissling , Lars W Chatrou , Thomas Couvreur , Hélène Morlon et al.
Journal of Biogeography, 2019, 46 (8), pp.1874-1888. ⟨10.1111/jbi.13552⟩
Article dans une revue hal-02408808 v1
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Detecting Environment-Dependent Diversification From Phylogenies: A Simulation Study and Some Empirical Illustrations

Eric Lewitus , Hélène Morlon
Systematic Biology, 2018, 67 (4), pp.576-593. ⟨10.1093/sysbio/syx095⟩
Article dans une revue hal-02408778 v1
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Clade-specific diversification dynamics of marine diatoms since the Jurassic

Eric Lewitus , Lucie Bittner , Shruti Malviya , Chris Bowler , Hélène Morlon
Nature Ecology & Evolution, 2018, 2 (11), pp.1715-1723. ⟨10.1038/s41559-018-0691-3⟩
Article dans une revue hal-02408145 v1
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Cracking the Code of Biodiversity Responses to Past Climate Change

David D. Nogues-Bravo , Francisco Rodríguez-Sánchez , Luisa Orsini , Erik de Boer , Roland Jansson et al.
Trends in Ecology & Evolution, 2018, 33 (10), pp.765-776. ⟨10.1016/j.tree.2018.07.005⟩
Article dans une revue hal-02408166 v1
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Contrasting impacts of competition on ecological and social trait evolution in songbirds

Jonathan P Drury , Joseph A Tobias , Kevin J Burns , Nicholas A Mason , Allison J Shultz et al.
PLoS Biology, 2018, 16 (1), pp.e2003563. ⟨10.1371/journal.pbio.2003563⟩
Article dans une revue hal-02408841 v1

A unifying comparative phylogenetic framework including traits coevolving across interacting lineages

Marc Manceau , Amaury Lambert , Hélène Morlon
Systematic Biology, 2017, ⟨10.1093/sysbio/syw115⟩
Article dans une revue hal-03914346 v1
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Accelerated body size evolution during cold climatic periods in the Cenozoic

Julien Clavel , Hélène Morlon
Proceedings of the National Academy of Sciences of the United States of America, 2016, 114, pp.4183 - 4188. ⟨10.1073/pnas.1606868114⟩
Article dans une revue hal-03721200 v1

Into the Andes: multiple independent colonizations drive montane diversity in the Neotropical clearwing butterflies Godyridina

Nicolas Chazot , Keith R Willmott , Fabien Condamine , Donna Lisa De-Silva , André Freitas et al.
Molecular Ecology, 2016, 25 (22), pp.5765-5784. ⟨10.1111/mec.13773⟩
Article dans une revue hal-02401804 v1

Phylogenies support out-of-equilibrium models of biodiversity

M. Manceau , A. Lambert , H. Morlon
Ecology Letters, 2015, 18 (4), pp.347-356
Article dans une revue hal-01176247 v1

Dispersal is a major driver of the latitudinal diversity gradient of Carnivora

Jonathan Rolland , Fabien L. Condamine , Champak Beeravolu Reddy , Frédéric Jiguet , Hélène Morlon
Global Ecology and Biogeography, 2015, 24 (9), pp.1059 - 1071. ⟨10.1111/geb.12354⟩
Article dans une revue istex hal-02638668 v1
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Islands as model systems in ecology and evolution: prospects fifty years after MacArthur-Wilson

Ben Warren , Daniel Simberloff , Robert Ricklefs , R. Aguilée , Fabien F. Condamine et al.
Ecology Letters, 2015, 18 (2), pp.200-217. ⟨10.1111/ele.12398⟩
Article dans une revue hal-02539938 v1
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Predictive ecology in a changing world

Nicolas Mouquet , Yvan Lagadeuc , Vincent Devictor , Luc Doyen , Anne Duputié et al.
Journal of Applied Ecology, 2015, 52 (5), pp.1293-1310. ⟨10.1111/1365-2664.12482⟩
Article dans une revue (article de synthèse) hal-01180277 v1
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RPANDA : an R package for macroevolutionary analyses on phylogenetic trees

Hélène Morlon , Eric Lewitus , Fabien L. Condamine , Julien Clavel , Jonathan P Drury
Methods in Ecology and Evolution, 2015, 7 (5), pp.589-597. ⟨10.1111/2041-210X.12526⟩
Article dans une revue hal-03048202 v1

The reconstructed tree in the lineage-based model of protracted speciation

Amaury Lambert , Hélène Morlon , Rampal S. Etienne
Journal of Mathematical Biology, 2015, 70 (1-2), pp.367-397. ⟨10.1007/s00285-014-0767-x⟩
Article dans une revue hal-01122781 v1
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Origin and diversification of living cycads: a cautionary tale on the impact of the branching process prior in Bayesian molecular dating

Fabien L. Condamine , Nathalie S. Nagalingum , Charles R Marshall , Hélène Morlon
BMC Evolutionary Biology, 2015, 15 (1), ⟨10.1186/s12862-015-0347-8⟩
Article dans une revue hal-03036369 v1

Effects of trophic similarity on community composition

Hélène Morlon , Sonia Kéfi , Neo Martinez , Vojtech Novotny
Ecology Letters, 2014, 17 (12), pp.1495 - 1506. ⟨10.1111/ele.12356⟩
Article dans une revue istex hal-01938664 v1

Estimating the duration of speciation from phylogenies

R.S. Etienne , H. Morlon , A. Lambert
Evolution - International Journal of Organic Evolution, 2014, 68 (8), pp.2430-2440. ⟨10.1111/evo.12433⟩
Article dans une revue hal-01108686 v1
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Faster Speciation and Reduced Extinction in the Tropics Contribute to the Mammalian Latitudinal Diversity Gradient

Jonathan Rolland , Fabien L. Condamine , Frederic Jiguet , Hélène Morlon
PLoS Biology, 2014, 12 (1), pp.e1001775. ⟨10.1371/journal.pbio.1001775⟩
Article dans une revue hal-01342093 v1
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Settling down of seasonal migrants promotes bird diversification

Jonathan Rolland , Frédéric Jiguet , Knud Andreas Jønsson , Fabien Condamine , Hélène Morlon
Proceedings of the Royal Society B: Biological Sciences, 2014, 281 (1784), pp.20140473. ⟨10.1098/rspb.2014.0473⟩
Article dans une revue hal-03035562 v1

New synthetic indicators to assess community resilience and restoration success

Renaud Jaunatre , Elise Buisson , Isabelle Muller , Hélène Morlon , François Mesléard et al.
Ecological Indicators, 2013, ⟨10.1016/j.ecolind.2013.01.023⟩
Article dans une revue istex hal-01328677 v1

Using phylogenies in conservation: new perspectives

J. Rolland , M.W. Cadotte , J. Davies , Vincent Devictor , S. Lavergne et al.
Biology Letters, 2012, 8 (5), pp.692-694. ⟨10.1098/rsbl.2011.1024⟩
Article dans une revue hal-02598059 v1
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Reconciling molecular phylogenies with the fossil record

Hélène Morlon , Todd L Parsons , Joshua B Plotkin
Proceedings of the National Academy of Sciences of the United States of America, 2011, 108, pp.16327 - 16332. ⟨10.1073/pnas.1102543108⟩
Article dans une revue hal-03721203 v1
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A general framework for the distance-decay of similarity in ecological communities

Hélène Morlon , George Chuyong , Richard Condit , Stephen Hubbell , David Kenfack et al.
Ecology Letters, 2008, 11, pp.904 - 917. ⟨10.1111/j.1461-0248.2008.01202.x⟩
Article dans une revue hal-03721206 v1

Écologie tropicale : de l'ombre à la lumière

Swanni Tatiana Alvarado , Christopher Baraloto , Laurent Bremond , François Bretagnolle , Elise Buisson et al.
Pierre-Michel Forget; Martine Hossaert-McKey; Odile Poncy. Le Cherche midi; CNRS, 192 p., 2015, 978-2-7491-4075-9
Ouvrages hal-01118878 v1

Comparing Extinction Rates: Past, Present, and Future

Jérémy Andréoletti , Hélène Morlon
Encyclopedia of Biodiversity, Elsevier, pp.348-365, 2024, 9780323984348. ⟨10.1016/b978-0-12-822562-2.00114-6⟩
Chapitre d'ouvrage hal-04631059 v1

Modélisation, scénarisation et aide à la décision

Alexandra Langlais , Lionel Ragot , Karima Benzada Jouira , Marie-Pierre Camproux-Duffrene , Franck Lecocq et al.
Prospective, droit, écologie & économie de la biodiversité, , pp.49-57, 2015
Chapitre d'ouvrage halshs-01115205 v1

Ecologie prédictive & changement planétaire

Frédéric Austerlitz , Michael Blum , Sarah Calba , Jérôme Chave , Marc Choisy et al.
Thiébault; Stéphanie and Hadi; Halima. Prospective de l'Institut écologie & environnement du CNRS, hors s\'{e}rie, Institut écologie & environnement du CNRS, pp.9-44, 2013
Chapitre d'ouvrage hal-01911607 v1