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Phylogenetic Comparative Approach Reveals Evolutionary Conservatism, Ancestral Composition, and Integration of Vertebrate Gut Microbiota

Benoît Perez-Lamarque , Guilhem Sommeria-Klein , Loréna Duret , Hélène Morlon
Molecular Biology and Evolution, 2023, 40 (7), ⟨10.1093/molbev/msad144⟩
Journal articles hal-04294906v1
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The build-up of the present-day tropical diversity of tetrapods

Ignacio Quintero , Michael J Landis , Walter Jetz , Hélène Morlon
Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (20), ⟨10.1073/pnas.2220672120⟩
Journal articles hal-04294987v1
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Towards a genetic theory of island biogeography: Inferring processes from multidimensional community‐scale data

Isaac Overcast , Guillaume Achaz , Robin Aguilée , Carmelo Andújar , Paula Arribas
Global Ecology and Biogeography, 2023, 32, pp.4 - 23. ⟨10.1111/geb.13604⟩
Journal articles inserm-04270149v1
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A global phylogeny of butterflies reveals their evolutionary history, ancestral hosts and biogeographic origins

Akito Kawahara , Caroline Storer , Ana Paula S Carvalho , David Plotkin , Fabien Condamine
Nature Ecology & Evolution, 2023, 7 (6), pp.903-913. ⟨10.1038/s41559-023-02041-9⟩
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Estimating clade‐specific diversification rates and palaeodiversity dynamics from reconstructed phylogenies

Nathan Mazet , Hélène Morlon , Pierre‐henri Fabre , Fabien Condamine
Methods in Ecology and Evolution, 2023, 14 (10), pp.2575-2591. ⟨10.1111/2041-210X.14195⟩
Journal articles hal-04262564v1
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The ClaDS rate-heterogeneous birth–death prior for full phylogenetic inference in BEAST2

Joëlle Barido-Sottani , Hélène Morlon
Systematic Biology, 2023, 72 (5), pp.1180-1187. ⟨10.1093/sysbio/syad027⟩
Journal articles hal-04378658v1
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The global EPTO database: Worldwide occurrences of aquatic insects

Afroditi Grigoropoulou , Suhaila Ab Hamid , Raúl Acosta , Emmanuel Olusegun Akindele , Salman Al-Shami
Global Ecology and Biogeography, 2023, 32 (5), pp.642-655. ⟨10.1111/geb.13648⟩
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Comparing different computational approaches for detecting long‐term vertical transmission in host‐associated microbiota

Benoît Perez‐lamarque , Hélène Morlon
Molecular Ecology, In press, ⟨10.1111/mec.16681⟩
Journal articles hal-04295204v1

A global biodiversity observing system to unite monitoring and guide action

Andrew Gonzalez , Petteri Vihervaara , Patricia Balvanera , Amanda E. Bates , Elisa Bayraktarov
Nature Ecology & Evolution, 2023, 7 (12), pp.1947-1952. ⟨10.1038/s41559-023-02171-0⟩
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Analyzing diversification dynamics using barcoding data: the case of an obligate mycorrhizal symbiont

Benoît Perez-Lamarque , Maarja Öpik , Odile Maliet , Ana Afonso Silva , Marc- André Selosse
Molecular Ecology, 2022, ⟨10.1111/mec.16478⟩
Journal articles hal-03650682v1
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Do closely related species interact with similar partners? Testing for phylogenetic signal in bipartite interaction networks

Benoît Perez-Lamarque , Odile Maliet , Benoît Pichon , Marc-André Selosse , Florent Martos
Peer Community Journal, 2022, 2, pp.e59. ⟨10.24072/pcjournal.179⟩
Journal articles hal-04295780v1
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Expert range maps of global mammal distributions harmonised to three taxonomic authorities

Charles Marsh , Yanina Sica , Connor Burgin , Wendy Dorman , Robert Anderson
Journal of Biogeography, 2022, 49 (5), pp.979-992. ⟨10.1111/jbi.14330⟩
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Limited Evidence for Microbial Transmission in the Phylosymbiosis between Hawaiian Spiders and Their Microbiota

Benoît Perez-Lamarque , Henrik Krehenwinkel , Rosemary G Gillespie , Hélène Morlon
Journal articles hal-03544270v1
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Studying speciation and extinction dynamics from phylogenies: addressing identifiability issues

Hélène Morlon , Stéphane Robin , Florian Hartig
Trends in Ecology & Evolution, 2022, 37 (6), pp.497-506. ⟨10.1016/j.tree.2022.02.004⟩
Journal articles hal-03671677v1

Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods

Paula Arribas , Carmelo Andújar , Kristine Bohmann , Jeremy Dewaard , Evan Economo
GigaScience, 2022, 11, ⟨10.1093/gigascience/giac065⟩
Journal articles hal-03873057v1
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A vision for incorporating human mobility in the study of human–wildlife interactions

Diego Ellis-Soto , Ruth Oliver , Vanessa Brum-Bastos , Urška Demšar , Brett Jesmer
Nature Ecology & Evolution, 2022, 7, pp.1362-1372. ⟨10.1038/s41559-023-02125-6⟩
Journal articles hal-04178548v1

Comparing different computational approaches for detecting long‐term vertical transmission in host‐associated microbiota

Benoît Perez-Lamarque , Hélène Morlon
Molecular Ecology, 2022, ⟨10.1111/mec.16681⟩
Journal articles hal-03873071v1

Connecting high‐throughput biodiversity inventories: Opportunities for a site‐based genomic framework for global integration and synthesis

Paula Arribas , Carmelo Andújar , Martin Bidartondo , Kristine Bohmann , Éric Coissac
Molecular Ecology, 2021, 30 (5), pp.1120-1135. ⟨10.1111/mec.15797⟩
Journal articles hal-03358499v1

Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes

Richard Dorrell , Adrien Villain , Benoît Perez-Lamarque , Guillemette Audren de Kerdrel , Giselle Mccallum
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (4), ⟨10.1073/pnas.2009974118⟩
Journal articles cea-04321619v1

Fast and Accurate Estimation of Species-Specific Diversification Rates Using Data Augmentation

Odile Maliet , Hélène Morlon
Systematic Biology, 2021, ⟨10.1093/sysbio/syab055⟩
Journal articles hal-03358524v1
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Tempo and mode of morphological evolution are decoupled from latitude in birds

Jonathan P Drury , Julien Clavel , Joseph A Tobias , Jonathan Rolland , Catherine Sheard
PLoS Biology, 2021, 19 (8), pp.e3001270. ⟨10.1371/journal.pbio.3001270⟩
Journal articles hal-03347737v1

Global drivers of eukaryotic plankton biogeography in the sunlit ocean

Guilhem Sommeria-Klein , Romain Watteaux , Federico Ibarbalz , Juan José Pierella Karlusich , Daniele Iudicone
Science, 2021, 374 (6567), pp.594-599. ⟨10.1126/science.abb3717⟩
Journal articles hal-03453705v1
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Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes

Richard G Dorrell , Adrien Villain , Benoît Perez-Lamarque , Guillemette Audren de Kerdrel , Giselle Mccallum
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (4), ⟨10.1073/pnas.2009974118/-/DCSupplemental⟩
Journal articles mnhn-03969507v1
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An individual‐based model for the eco‐evolutionary emergence of bipartite interaction networks

Odile Maliet , Nicolas Loeuille , Hélène Morlon
Ecology Letters, 2020, 23 (11), pp.1623-1634. ⟨10.1111/ele.13592⟩
Journal articles hal-03089217v1
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Reliable Phylogenetic Regressions for Multivariate Comparative Data: Illustration with the MANOVA and Application to the Effect of Diet on Mandible Morphology in Phyllostomid Bats

Julien Clavel , Hélène Morlon
Systematic Biology, 2020, 69 (5), pp.927-943. ⟨10.1093/sysbio/syaa010⟩
Journal articles hal-02505243v1
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Cheating in arbuscular mycorrhizal mutualism: a network and phylogenetic analysis of mycoheterotrophy

Benoît Perez‐lamarque , Marc‐andré Selosse , Maarja Öpik , Hélène Morlon , Florent Martos
New Phytologist, 2020, 226 (6), pp.1822-1835. ⟨10.1111/nph.16474⟩
Journal articles hal-02877204v1
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Model-Based Inference of Punctuated Molecular Evolution

Marc Manceau , Julie Marin , Hélène Morlon , Amaury Lambert
Molecular Biology and Evolution, 2020, 37 (11), pp.3308-3323. ⟨10.1093/molbev/msaa144⟩
Journal articles hal-03089352v1
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Response to Technical Comment 'A cautionary note for users of linear diversification dependencies'

Hélène Morlon , Jonathan Rolland , Fabien Condamine
Ecology Letters, 2020, 23, pp.1172-1174. ⟨10.1111/ele.13513⟩
Journal articles hal-02520611v1
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Diversity hotspots: Coldspots of speciation?

Hélène Morlon
Science, 2020, 370 (6522), pp.1268-1269. ⟨10.1126/science.abf0830⟩
Journal articles hal-03089212v1
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Characterizing and Comparing Phylogenetic Trait Data from Their Normalized Laplacian Spectrum

Eric Lewitus , Leandro Aristide , Hélène Morlon
Systematic Biology, inPress, ⟨10.1093/sysbio/syz061⟩
Journal articles hal-02407709v1

Assessing the causes of diversification slowdowns: temperature‐dependent and diversity‐dependent models receive equivalent support

Fabien Condamine , Jonathan Rolland , Hélène Morlon
Ecology Letters, 2019, 22 (11), pp.1900-1912. ⟨10.1111/ele.13382⟩
Journal articles hal-02323724v1
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A Penalized Likelihood Framework for High-Dimensional Phylogenetic Comparative Methods and an Application to New-World Monkeys Brain Evolution

Julien Clavel , Leandro Aristide , Hélène Morlon
Systematic Biology, 2019, 68 (1), pp.93-116. ⟨10.1093/sysbio/syy045⟩
Journal articles hal-02408141v1
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Estimating Diversity Through Time using Molecular Phylogenies: Old and Species-Poor Frog Families are the Remnants of a Diverse Past

O Billaud , D S Moen , Todd L. Parsons , Hélène Morlon
Systematic Biology, 2019, ⟨10.1093/sysbio/syz057⟩
Journal articles hal-02407752v1
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Characterizing symbiont inheritance during host–microbiota evolution: Application to the great apes gut microbiota

Benoît Perez‐lamarque , Hélène Morlon
Molecular Ecology Resources, inPress, ⟨10.1111/1755-0998.13063⟩
Journal articles hal-02280964v1
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Understanding the effect of competition during evolutionary radiations: an integrated model of phenotypic and species diversification

Leandro Aristide , Hélène Morlon
Ecology Letters, 2019, ⟨10.1111/ele.13385⟩
Journal articles hal-02408038v1
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Embracing heterogeneity: coalescing the Tree of Life and the future of phylogenomics

Gustavo A Bravo , Alexandre Antonelli , Christine D Bacon , Krzysztof Bartoszek , Mozes P K Blom
PeerJ, 2019, 7, pp.e6399. ⟨10.7717/peerj.6399⟩
Journal articles hal-02408182v1
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A model with many small shifts for estimating species-specific diversification rates

Odile Maliet , Florian Hartig , Hélène Morlon
Nature Ecology & Evolution, 2019, 3 (7), pp.1086-1092. ⟨10.1038/s41559-019-0908-0⟩
Journal articles hal-02408107v1
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Which frugivory‐related traits facilitated historical long‐distance dispersal in the custard apple family (Annonaceae) ?

Renske E Onstein , W. Daniel Daniel Kissling , Lars W Chatrou , Thomas Couvreur , Hélène Morlon
Journal of Biogeography, 2019, 46 (8), pp.1874-1888. ⟨10.1111/jbi.13552⟩
Journal articles hal-02408808v1
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Clade-specific diversification dynamics of marine diatoms since the Jurassic

Eric Lewitus , Lucie Bittner , Shruti Malviya , Chris Bowler , Hélène Morlon
Nature Ecology & Evolution, 2018, 2 (11), pp.1715-1723. ⟨10.1038/s41559-018-0691-3⟩
Journal articles hal-02408145v1
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Cracking the Code of Biodiversity Responses to Past Climate Change

David D. Nogues-Bravo , Francisco Rodríguez-Sánchez , Luisa Orsini , Erik de Boer , Roland Jansson
Trends in Ecology & Evolution, 2018, 33 (10), pp.765-776. ⟨10.1016/j.tree.2018.07.005⟩
Journal articles hal-02408166v1
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Contrasting impacts of competition on ecological and social trait evolution in songbirds

Jonathan P Drury , Joseph A Tobias , Kevin J Burns , Nicholas A Mason , Allison J Shultz
PLoS Biology, 2018, 16 (1), pp.e2003563. ⟨10.1371/journal.pbio.2003563⟩
Journal articles hal-02408841v1
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Detecting Environment-Dependent Diversification From Phylogenies: A Simulation Study and Some Empirical Illustrations

Eric Lewitus , Hélène Morlon
Systematic Biology, 2018, 67 (4), pp.576-593. ⟨10.1093/sysbio/syx095⟩
Journal articles hal-02408778v1

Into the Andes: multiple independent colonizations drive montane diversity in the Neotropical clearwing butterflies Godyridina

Nicolas Chazot , Keith R Willmott , Fabien Condamine , Donna Lisa De-Silva , André Freitas
Molecular Ecology, 2016, 25 (22), pp.5765-5784. ⟨10.1111/mec.13773⟩
Journal articles hal-02401804v1
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Islands as model systems in ecology and evolution: prospects fifty years after MacArthur-Wilson

Ben Warren , Daniel Simberloff , Robert Ricklefs , Robin Aguilée , Fabien F. Condamine
Ecology Letters, 2015, 18 (2), pp.200-217. ⟨10.1111/ele.12398⟩
Journal articles hal-02539938v1

The reconstructed tree in the lineage-based model of protracted speciation

Amaury Lambert , Hélène Morlon , Rampal S. Etienne
Journal of Mathematical Biology, 2015, 70 (1-2), pp.367-397. ⟨10.1007/s00285-014-0767-x⟩
Journal articles hal-01122781v1
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RPANDA : an R package for macroevolutionary analyses on phylogenetic trees

Hélène Morlon , Eric Lewitus , Fabien L. Condamine , Julien Clavel , Jonathan P Drury
Methods in Ecology and Evolution, 2015, 7 (5), pp.589-597. ⟨10.1111/2041-210X.12526⟩
Journal articles hal-03048202v1

Predictive ecology in a changing world

Nicolas Mouquet , Yvan Lagadeuc , Vincent Devictor , Luc L. Doyen , Anne Duputié
Journal of Applied Ecology, 2015, 52 (5), pp.1293-1310. ⟨10.1111/1365-2664.12482⟩
Journal articles hal-01180277v1

Dispersal is a major driver of the latitudinal diversity gradient of Carnivora

Jonathan Rolland , Fabien L. Condamine , Champak Beeravolu Reddy , Frédéric Jiguet , Hélène Morlon
Global Ecology and Biogeography, 2015, 24 (9), pp.1059 - 1071. ⟨10.1111/geb.12354⟩
Journal articles hal-02638668v1
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Origin and diversification of living cycads: a cautionary tale on the impact of the branching process prior in Bayesian molecular dating

Fabien L. Condamine , Nathalie S. Nagalingum , Charles R Marshall , Hélène Morlon
BMC Evolutionary Biology, 2015, 15 (1), ⟨10.1186/s12862-015-0347-8⟩
Journal articles hal-03036369v1
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Faster Speciation and Reduced Extinction in the Tropics Contribute to the Mammalian Latitudinal Diversity Gradient

Jonathan Rolland , Fabien L. Condamine , Frederic Jiguet , Hélène Morlon
PLoS Biology, 2014, 12 (1), pp.e1001775. ⟨10.1371/journal.pbio.1001775⟩
Journal articles hal-01342093v1

Effects of trophic similarity on community composition

Hélène Morlon , Sonia Kéfi , Neo Martinez , Vojtech Novotny
Ecology Letters, 2014, 17 (12), pp.1495 - 1506. ⟨10.1111/ele.12356⟩
Journal articles hal-01938664v1
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Settling down of seasonal migrants promotes bird diversification

Jonathan Rolland , Frédéric Jiguet , Knud Andreas Jønsson , Fabien Condamine , Hélène Morlon
Proceedings of the Royal Society B: Biological Sciences, 2014, 281 (1784), pp.20140473. ⟨10.1098/rspb.2014.0473⟩
Journal articles hal-03035562v1

New synthetic indicators to assess community resilience and restoration success

Renaud Jaunatre , Elise Buisson , Isabelle Muller , Hélène Morlon , François Mesléard
Ecological Indicators, 2013, ⟨10.1016/j.ecolind.2013.01.023⟩
Journal articles hal-01328677v1

Écologie tropicale : de l'ombre à la lumière

Swanni Tatiana Alvarado , Christopher Baraloto , Laurent Bremond , François Bretagnolle , Elise Buisson
P.-M. Forget, M. Hossaert-McKey & O. Poncy. Le Cherche midi; CNRS, pp.192, 2015, 978-2-7491-4075-9
Books hal-01118878v1

Modélisation, scénarisation et aide à la décision

Alexandra Langlais , Lionel Ragot , Karima Benzada , Marie-Pierre Camproux-Duffrene , Franck Lecocq
Prospective, droit, écologie & économie de la biodiversité, , pp.49-57, 2015
Book sections halshs-01115205v1

Ecologie prédictive & changement planétaire

Frédéric Austerlitz , Michael Blum , Sarah Calba , Jérôme Chave , Marc Choisy
Thiébault; Stéphanie and Hadi; Halima. Prospective de l'Institut écologie & environnement du CNRS, hors s\'{e}rie, Institut écologie & environnement du CNRS, pp.9-44, 2013
Book sections hal-01911607v1