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Hersen Pascal

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37466
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Identification of individual cells from z-stacks of bright-field microscopy images

Jean-Baptiste Lugagne , Srajan Jain , Pierre Ivanovitch , Zacchary Ben Meriem , Clément Vulin
Scientific Reports, 2018, 8 (1), pp.11455. ⟨10.1038/s41598-018-29647-5⟩
Article dans une revue hal-01898065v1
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Long-term tracking of budding yeast cells in brightfield microscopy: CellStar and the Evaluation Platform

Cristian Versari , Szymon Stoma , Kirill Batmanov , Artémis Llamosi , Filip Mroz
Journal of the Royal Society Interface, 2017, 14 (127), pp.32. ⟨10.1098/rsif.2016.0705⟩
Article dans une revue hal-01547623v1
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Balancing a genetic toggle switch by real-time feedback control and periodic forcing

Jean-Baptiste Lugagne , Sebastián Sosa Carrillo , Melanie Kirch , Agnes Köhler , Gregory Batt
Nature Communications, 2017, 8 (1), pp.1-8. ⟨10.1038/s41467-017-01498-0⟩
Article dans une revue hal-01666980v1

What population reveals about individual cell identity: Single-cell parameter estimation of models of gene expression in yeast

Artémis Llamosi , Andres Gonzalez , Cristian Versari , Eugenio Cinquemani , Giancarlo Ferrari-Trecate
PLoS Computational Biology, 2016, 12 (2), pp.e1004706. ⟨10.1371/journal.pcbi.1004706⟩
Article dans une revue hal-01248298v1

Growing Yeast into Cylindrical Colonies

Clément Vulin , Jean-Marc Di Meglio , Ariel B. Lindner , Adrian Daerr , Andrew Murray
Biophysical Journal, 2014, 106 (10), pp.2214-2221. ⟨10.1016/j.bpj.2014.02.040⟩
Article dans une revue hal-03761718v1

Severe osmotic compression triggers a slowdown of intracellular signaling, which can be explained by molecular crowding.

Agnès Miermont , François Waharte , Shiqiong Hu , Megan Nicole Mcclean , Samuel Bottani
Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (14), pp.5725-30. ⟨10.1073/pnas.1215367110⟩
Article dans une revue hal-00817393v1
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Long-term model predictive control of gene expression at the population and single-cell levels

Jannis Uhlendorf , Agnès Miermont , Thierry Delaveau , Gilles Charvin , Francois Fages
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (35), pp.14271-14276. ⟨10.1073/pnas.1206810109⟩
Article dans une revue hal-01528440v1

In silico control of biomolecular processes

Jannis Uhlendorf , Agnès Miermont , Thierry Delaveau , Gilles Charvin , François Fages
Mario A. Marchisio. Computational Methods in Synthetic Biology, 1244, Springer New York, pp.8, 2014, Methods in Molecular Biology, 978-1-4939-1877-5. ⟨10.1007/978-1-4939-1878-2_13⟩
Chapitre d'ouvrage hal-01104057v1

Towards Real-Time Control of Gene Expression at the Single Cell Level: A Stochastic Control Approach

Lakshmeesh Maruthi , Ilya Tkachev , Alfonso Carta , Eugenio Cinquemani , Pascal Hersen
Computational Methods in Systems Biology, 8859, Springer International Publishing, pp.155-172, 2014, Lecture Notes in Computer Science, 978-3-319-12981-5. ⟨10.1007/978-3-319-12982-2_12⟩
Chapitre d'ouvrage hal-01096959v1