Hersen Pascal

Identifiants chercheurs

IdHAL :

hersen-pascal

ORCID :

0000-0003-2379-4280

IdRef :

08928707X

Publications

Article dans une revue (60)

Optogenetic control of pheromone gradients reveals functional limits of mating behavior in budding yeast Alvaro Banderas,Maud Hofmann,Céline Cordier,Matthias Le Bec,M Carolina Elizondo-Cantúet al. Life Science Alliance, 2025, 8 (6), ⟨10.26508/lsa.202403078⟩ Article dans une revue hal-04789573v1
Amplitude-Modulated Singular Value Decomposition for Ultrafast Ultrasound Imaging of Gas Vesicles Ge Zhang,Mathis Vert,Mohamed Nouhoum,Esteban Rivera,Nabil Haidouret al. IEEE Transactions on Medical Imaging, 2025, 44 (8), pp.3490-3501. ⟨10.1109/TMI.2025.3565023⟩ Article dans une revue hal-05342227v1
Optogenetic spatial patterning of cooperation in yeast populations Matthias Le Bec,Sylvain Pouzet,Céline Cordier,Simon Barral,Vittore Scolariet al. Nature Communications, 2024, 15 (1), pp.75. ⟨10.1038/s41467-023-44379-5⟩ Article dans une revue hal-04288752v2
Yeast cell responses and survival during periodic osmotic stress are controlled by glucose availability Fabien Duveau,Céline Cordier,Lionel Chiron,Matthias Le Bec,Sylvain Pouzetet al. eLife, 2024, 12, pp.RP88750. ⟨10.7554/eLife.88750⟩ Article dans une revue hal-04799234v1
Prediction of strain level phage–host interactions across the Escherichia genus using only genomic information Baptiste Gaborieau,Hugo Vaysset,Florian Tesson,Inès Charachon,Nicolas Dibet al. Nature Microbiology, 2024, 9 (11), pp.2847-2861. ⟨10.1038/s41564-024-01832-5⟩ Article dans une revue hal-04781608v1
Yeast cell responses and survival during periodic osmotic stress are controlled by glucose availability Fabien Duveau,Céline Cordier,Lionel Chiron,Matthias Lebec,Sylvain Pouzetet al. eLife, 2023, ⟨10.7554/elife.88750.1⟩ Article dans une revue hal-04288775v1
Optogenetic control of beta-carotene bioproduction in yeast across multiple lab-scales Sylvain Pouzet,Jessica Cruz-Ramón,Matthias Le Bec,Céline Cordier,Alvaro Banderaset al. Frontiers in Bioengineering and Biotechnology, 2023, 11, pp.1085268. ⟨10.3389/fbioe.2023.1085268⟩ Article dans une revue hal-04247146v1
CyberSco.Py an open-source software for event-based, conditional microscopy Lionel Chiron,Matthias Le Bec,Céline Cordier,Sylvain Pouzet,Dimitrije Milunovet al. Scientific Reports, 2022, 12 (1), pp.11579. ⟨10.1038/s41598-022-15207-5⟩ Article dans une revue hal-03761554v1
The Promise of Optogenetics for Bioproduction: Dynamic Control Strategies and Scale-Up Instruments Sylvain Pouzet,Alvaro Banderas,Matthias Le Bec,Thomas Lautier,Gilles Truanet al. Bioengineering, 2020, 7 (4), pp.151. ⟨10.3390/bioengineering7040151⟩ Article dans une revue (article de synthèse) hal-03083199v1
Autonomous and Assisted Control for Synthetic Microbiology Alvaro Banderas,Matthias Le Bec,Céline Cordier,Pascal Hersen International Journal of Molecular Sciences, 2020, 21 (23), pp.9223. ⟨10.3390/ijms21239223⟩ Article dans une revue hal-03083194v1
Observing Nutrient Gradients, Gene Expression and Growth Variation Using the &quot;Yeast Machine&quot; Microfluidic Device Zoran Marinkovic,Clément Vulin,Mislav Acman,Xiaohu Song,Jean Di Meglioet al. Bio-protocol , 2020, 10 (13), ⟨10.21769/BioProtoc.3668⟩ Article dans une revue hal-03083179v1
Rational programming of history-dependent logic in cellular populations Ana Zúñiga,Sarah Guiziou,Pauline Mayonove,Zachary Ben Meriem,Miguel Camachoet al. Nature Communications, 2020, 11 (1), pp.4758. ⟨10.1038/s41467-020-18455-z⟩ Article dans une revue inserm-02952457v1
A microfluidic device for inferring metabolic landscapes in yeast monolayer colonies Zoran Marinkovic,Clément Vulin,Mislav Acman,Xiaohu Song,Jean-Marc Di Meglioet al. eLife, 2019, 8, ⟨10.7554/eLife.47951⟩ Article dans une revue hal-02331190v1
Hyperosmotic Stress Response Memory is Modulated by Gene Positioning in Yeast Zacchari Ben Meriem,Yasmine Khalil,Pascal Hersen,Emmanuelle Fabre Cells, 2019, 8 (6), pp.582. ⟨10.3390/cells8060582⟩ Article dans une revue hal-02331194v1
Enrichment of persisters enabled by a ß-lactam-induced filamentation method reveals their stochastic single-cell awakening Etthel Windels,Zacchari Ben Meriem,Taiyeb Zahir,Kevin Verstrepen,Pascal Hersenet al. Communications Biology, 2019, 2 (1), pp.426. ⟨10.1038/s42003-019-0672-3⟩ Article dans une revue hal-03761734v1
Identification of individual cells from z-stacks of bright-field microscopy images Jean-Baptiste Lugagne,Srajan Jain,Pierre Ivanovitch,Zacchary Ben Meriem,Clément Vulinet al. Scientific Reports, 2018, 8 (1), pp.11455. ⟨10.1038/s41598-018-29647-5⟩ Article dans une revue hal-01898065v1
Assembly and Characterizations of Bifunctional Fluorescent and Magnetic Microneedles Displaying Length Tunability over One Decade Jean-Baptiste Lugagne,Gwennhaël Brackx,Emek Seyrek,Sophie Nowak,Yann Sivryet al. Advanced Functional Materials, 2017, 27 (31), pp.1700362. ⟨10.1002/adfm.201700362⟩ Article dans une revue hal-02342490v1
Long-range self-organization of cytoskeletal myosin II filament stacks Shiqiong Hu,Kinjal Dasbiswas,Zhenhuan Guo,Yee-Han Tee,Visalatchi Thiagarajanet al. Nature Cell Biology, 2017, 19 (2), pp.133-141. ⟨10.1038/ncb3466⟩ Article dans une revue hal-03761727v1
Extracellular Vesicle Production Loaded with Nanoparticles and Drugs in a Trade-off between Loading, Yield and Purity: Towards a Personalized Drug Delivery System Max Piffoux,Amanda Silva,Jean-Baptiste Lugagne,Pascal Hersen,Claire Wilhelmet al. Advanced Biosystems, 2017, 1 (5), pp.1700044. ⟨10.1002/adbi.201700044⟩ Article dans une revue hal-03761731v1
Long-term tracking of budding yeast cells in brightfield microscopy: CellStar and the Evaluation Platform Cristian Versari,Szymon Stoma,Kirill Batmanov,Artémis Llamosi,Filip Mrozet al. Journal of the Royal Society Interface, 2017, 14 (127), pp.32. ⟨10.1098/rsif.2016.0705⟩ Article dans une revue hal-01547623v1
Balancing a genetic toggle switch by real-time feedback control and periodic forcing Jean-Baptiste Lugagne,Sebastián Sosa Carrillo,Melanie Kirch,Agnes Köhler,Gregory Battet al. Nature Communications, 2017, 8 (1), pp.1-8. ⟨10.1038/s41467-017-01498-0⟩ Article dans une revue hal-01666980v1
What population reveals about individual cell identity: Single-cell parameter estimation of models of gene expression in yeast Artémis Llamosi,Andres Gonzalez,Cristian Versari,Eugenio Cinquemani,Giancarlo Ferrari-Trecateet al. PLoS Computational Biology, 2016, 12 (2), pp.e1004706. ⟨10.1371/journal.pcbi.1004706⟩ Article dans une revue hal-01248298v1
Age-Related Changes in Locomotor Performance Reveal a Similar Pattern for Caenorhabditis elegans, Mus domesticus, Canis familiaris, Equus caballus, and Homo sapiens Adrien Marck,Geoffroy C.B. Berthelot,Vincent Foulonneau,Andy Marc,Juliana Anteroet al. Journals of Gerontology Series A: Biological Sciences and Medical Sciences, 2016, 72 (4), pp.455-463. ⟨10.1093/gerona/glw136⟩ Article dans une revue hal-01792239v1
Out-of-equilibrium stationary states, percolation, and subcritical instabilities in a fully nonconservative system Mathieu Génois,Pascal Hersen,Eric Bertin,Sylvain Courrech Du Pont,Guillaume Grégoire Physical Review E , 2016, 94 (4), pp.042101. ⟨10.1103/physreve.94.042101⟩ Article dans une revue hal-02001608v3
Structured illumination microscopy reveals focal adhesions are composed of linear subunits Shiqiong Hu,Yee-Han Tee,Alexandre Kabla,Ronen Zaidel-Bar,Alexander Bershadskyet al. Cytoskeleton, 2015, 72 (5), pp.235-245. ⟨10.1002/cm.21223⟩ Article dans une revue istex hal-03761721v1
Combining Spinach-tagged RNA and gene localization to image gene expression in live yeast David Guet,Laura Burns,Suman Maji,Jérôme Boulanger,Pascal Hersenet al. Nature Communications, 2015, 6, pp.8882. ⟨10.1038/ncomms9882⟩ Article dans une revue hal-01725192v1
High transcript levels of heat-shock genes are associated with shorter lifespan of Caenorhabditis elegans X. Manière,A. Krisko,F.X. Pellay,J.-M. Di Meglio,Pascal Hersenet al. Experimental Gerontology, 2014, 60 (11), pp.12-17. ⟨10.1016/j.exger.2014.09.005⟩ Article dans une revue hal-03761717v1
Growing Yeast into Cylindrical Colonies Clément Vulin,Jean-Marc Di Meglio,Ariel B. Lindner,Adrian Daerr,Andrew Murrayet al. Biophysical Journal, 2014, 106 (10), pp.2214-2221. ⟨10.1016/j.bpj.2014.02.040⟩ Article dans une revue hal-03761718v1
In vivo measurement of signaling cascade dynamics Megan Mcclean,Pascal Hersen,Sharad Ramanathan Cell Cycle, 2014, pp.373-376. ⟨10.4161/cc.8.3.7450⟩ Article dans une revue hal-03761747v1
Severe osmotic compression triggers a slowdown of intracellular signaling, which can be explained by molecular crowding. Agnès Miermont,François Waharte,Shiqiong Hu,Megan Nicole Mcclean,Samuel Bottaniet al. Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (14), pp.5725-30. ⟨10.1073/pnas.1215367110⟩ Article dans une revue hal-00817393v1
An agent-based model of dune interactions produces the emergence of patterns in deserts Mathieu Génois,Sylvain Courrech Du Pont,Pascal Hersen,Guillaume Grégoire Geophysical Research Letters, 2013, 40, pp.3909. ⟨10.1002/grl.50757⟩ Article dans une revue hal-00759289v2
Spatial structuring and size selection as collective behaviours in an agent-based model for barchan fields. Mathieu Génois,Pascal Hersen,Sylvain Courrech Du Pont,Guillaume Grégoire The European Physical Journal B: Condensed Matter and Complex Systems, 2013, 86 (11), pp.447. ⟨10.1140/epjb/e2013-40710-2⟩ Article dans une revue istex hal-00869412v1
Evidence of a large-scale mechanosensing mechanism for cellular adaptation to substrate stiffness Léa Trichet,Jimmy Le Digabel,Rhoda Hawkins,Sri Ram Krishna Vedula,Mukund Guptaet al. Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (18), pp.6933-6938. ⟨10.1073/pnas.1117810109⟩ Article dans une revue hal-03761708v1
Micro-patterned porous substrates for cell-based assays Fanny Evenou,Jean-Marc Di Meglio,Benoit Ladoux,Pascal Hersen Lab on a Chip, 2012, 12 (9), pp.1717. ⟨10.1039/C2LC20696J⟩ Article dans une revue hal-03761704v1
Long-term model predictive control of gene expression at the population and single-cell levels Jannis Uhlendorf,Agnès Miermont,Thierry Delaveau,Gilles Charvin,Francois Fageset al. Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (35), pp.14271-14276. ⟨10.1073/pnas.1206810109⟩ Article dans une revue hal-01528440v1
Emerging modes of collective cell migration induced by geometrical constraints Sri Ram Krishna Vedula,Man Chun Leong,Tan Lei Lai,Pascal Hersen,Alexandre Kablaet al. Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (32), pp.12974-12979. ⟨10.1073/pnas.1119313109⟩ Article dans une revue hal-03761712v1
Locomotion Control of Caenorhabditis elegans through Confinement Félix Lebois,Pascal Sauvage,Charlotte Py,Olivier Cardoso,Benoît Ladouxet al. Biophysical Journal, 2012, 102 (12), pp.2791-2798. ⟨10.1016/j.bpj.2012.04.051⟩ Article dans une revue hal-03761705v1
Cell crawling mediates collective cell migration to close undamaged epithelial gaps Ester Anon,Xavier Serra-Picamal,Pascal Hersen,Nils Gauthier,Michael Sheetzet al. Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (27), pp.10891-10896. ⟨10.1073/pnas.1117814109⟩ Article dans une revue hal-03761707v1
Magnetic micropillars as a tool to govern substrate deformations Jimmy Le Digabel,Nicolas Biais,Jérôme Fresnais,Jean-François Berret,Pascal Hersenet al. Lab on a Chip, 2011, 11 (15), ⟨10.1039/C1LC20263D⟩ Article dans une revue hal-01378197v1
Towards Real-Time Control of Gene Expression: in silico Analysis* Jannis Uhlendorf,Pascal Hersen,Gregory Batt IFAC Proceedings Volumes, 2011, 44 (1), pp.14844-14850. ⟨10.3182/20110828-6-IT-1002.02614⟩ Article dans une revue hal-03761737v1
Push it, pull it Pascal Hersen,Benoît Ladoux Nature, 2011, pp.340-341. ⟨10.1038/470340a⟩ Article dans une revue istex hal-03761744v1
The Dynamical Systems Properties of the HOG Signaling Cascade Agnès Miermont,Jannis Uhlendorf,Megan Mcclean,Pascal Hersen Journal of Signal Transduction, 2011, 2011, pp.1-12. ⟨10.1155/2011/930940⟩ Article dans une revue hal-03761696v1
Mechanics of cell spreading within 3D-micropatterned environments Marion Ghibaudo,Jean-Marc Di Meglio,Pascal Hersen,Benoit Ladoux Lab on a Chip, 2011, 11 (5), pp.805-812. ⟨10.1039/C0LC00221F⟩ Article dans une revue hal-03761693v1
Running Worms: C. elegans Self-Sorting by Electrotaxis Xavier Manière,Félix Lebois,Ivan Matic,Benoit Ladoux,Jean-Marc Di Meglioet al. PLoS ONE, 2011, 6 (2), pp.e16637. ⟨10.1371/journal.pone.0016637⟩ Article dans une revue hal-03761699v1
Polygon formation and surface flow on a rotating fluid surface R. Bergmann,L. Tophøj,T. Homan,P. Hersen,A. Andersenet al. Journal of Fluid Mechanics, 2011, 679, pp.415-431. ⟨10.1017/jfm.2011.152⟩ Article dans une revue hal-03761702v1
Strength Dependence of Cadherin-Mediated Adhesions Benoit Ladoux,Ester Anon,Mireille Lambert,Aleksandr Rabodzey,Pascal Hersenet al. Biophysical Journal, 2010, 98 (4), pp.534-542. ⟨10.1016/j.bpj.2009.10.044⟩ Article dans une revue hal-03761686v1
Formation and stability of transverse and longitudinal sand dunes Erwan Reffet,Sylvain Courrech Du Pont,Pascal Hersen,Stéphane Douady Geology, 2010, 38 (6), pp.491-494. ⟨10.1130/G30894.1⟩ Article dans une revue hal-03761691v1
Traction forces exerted by epithelial cell sheets Alexandre Saez,Ester Anon,Marion Ghibaudo,Olivia Du Roure,Jean-Marc Di Meglioet al. Journal of Physics: Condensed Matter, 2010, 22 (19), pp.194119. ⟨10.1088/0953-8984/22/19/194119⟩ Article dans une revue hal-03761689v1
Substrate topography induces a cross-over from 2D to 3D behavior in fibroblast migration Marion Ghibaudo,Léa Trichet,Jimmy Le Digabel,Alain Richert,Pascal Hersenet al. Biophysical Journal, 2009, 97 (1), pp.357-368. ⟨10.1016/j.bpj.2009.04.024⟩ Article dans une revue hal-00410702v1
Signal processing by the HOG MAP kinase pathway Pascal Hersen,Megan Nicole Mcclean,Lakshminarayanan Mahadevan,Sharad Ramanathan Proceedings of the National Academy of Sciences of the United States of America, 2008, 105 (20), pp.7165-7170. ⟨10.1073/pnas.0710770105⟩ Article dans une revue hal-00321259v1
Dynamic analysis of cell signalling Pascal Hersen,Megan Mcclean,Sharad Ramanathan Médecine/Sciences, 2008, 24 (12), pp.1020-1022. ⟨10.1051/medsci/200824121020⟩ Article dans une revue (article de synthèse) hal-03761748v1
Genetic drift at expanding frontiers promotes gene segregation Oskar Hallatschek,Pascal Hersen,Sharad Ramanathan,David R. Nelson Proceedings of the National Academy of Sciences of the United States of America, 2007, 104, pp.19926-19930. ⟨10.1073/pnas.0710150104⟩ Article dans une revue hal-00321262v1
The song of the dunes as a self-synchronized instrument Stéphane Douady,Audrey Manning,Pascal Hersen,Hicham Elbelrhiti,Suzie Protièreet al. Physical Review Letters, 2006, 97 (1), pp.018002. ⟨10.1103/PhysRevLett.97.018002⟩ Article dans une revue hal-00135892v1
Polygons on a Rotating Fluid Surface Thomas Jansson,Martin Haspang,Kåre Jensen,Pascal Hersen,Tomas Bohr Physical Review Letters, 2006, 96 (17), pp.174502. ⟨10.1103/PhysRevLett.96.174502⟩ Article dans une revue hal-03761666v1
Polygons on a Rotating Fluid Surface Thomas Jansson,Martin Haspang,Kåre H. Jensen,Pascal Hersen,Tomas Bohr Physical Review Letters, 2006, 96 (17), pp.174502. ⟨10.1103/PhysRevLett.96.174502⟩ Article dans une revue hal-00135893v1
Collision of barchan dunes as a mechanism of size regulation Pascal Hersen,Stéphane Douady Geophysical Research Letters, 2005, 32 (21), pp.L21403. ⟨10.1029/2005GL024179⟩ Article dans une revue hal-03761654v1
Flow effects on the morphology and dynamics of aeolian and subaqueous barchan dunes Pascal Hersen Journal of Geophysical Research: Earth Surface, 2005, 110 (F4), pp.n/a-n/a. ⟨10.1029/2004JF000185⟩ Article dans une revue hal-03761625v1
On the crescentic shape of barchan dunes P. Hersen The European Physical Journal B: Condensed Matter and Complex Systems, 2004, 37 (4), pp.507-514. ⟨10.1140/epjb/e2004-00087-y⟩ Article dans une revue hal-03761616v1
Corridors of barchan dunes: stability and size selection Pascal Hersen,Ken H. Andersen,Hicham Elbelrhiti,Bruno Andreotti,Philippe Claudinet al. Physical Review E : Statistical, Nonlinear, and Soft Matter Physics [2001-2015], 2004, 69 (1), pp.011304. ⟨10.1103/PhysRevE.69.011304⟩ Article dans une revue hal-00009356v1
Relevant Length Scale of Barchan Dunes Pascal Hersen,Stéphane Douady,Bruno Andreotti Physical Review Letters, 2002, 89 (26), pp.264301. ⟨10.1103/PhysRevLett.89.264301⟩ Article dans une revue hal-03761584v1

Chapitre d'ouvrage (7)

In silico control of biomolecular processes Jannis Uhlendorf,Agnès Miermont,Thierry Delaveau,Gilles Charvin,François Fageset al. Mario A. Marchisio. Computational Methods in Synthetic Biology, 1244, Springer New York, pp.8, 2014, Methods in Molecular Biology, 978-1-4939-1877-5. ⟨10.1007/978-1-4939-1878-2_13⟩ Chapitre d'ouvrage hal-01104057v1
Microfluidic Platforms for Generating Dynamic Environmental Perturbations to Study the Responses of Single Yeast Cells Anjali Bisaria,Pascal Hersen,Megan Mcclean Yeast Genetics, 1205, Springer New York, pp.111-129, 2014, Methods in Molecular Biology, ⟨10.1007/978-1-4939-1363-3_8⟩ Chapitre d'ouvrage hal-03761742v1
Towards Real-Time Control of Gene Expression at the Single Cell Level: A Stochastic Control Approach Lakshmeesh Maruthi,Ilya Tkachev,Alfonso Carta,Eugenio Cinquemani,Pascal Hersenet al. Computational Methods in Systems Biology, 8859, Springer International Publishing, pp.155-172, 2014, Lecture Notes in Computer Science, 978-3-319-12981-5. ⟨10.1007/978-3-319-12982-2_12⟩ Chapitre d'ouvrage hal-01096959v1
Micropatterned Porous Membranes for Combinatorial Cell-Based Assays Clément Vulin,Fanny Evenou,Jean-Marc Di Meglio,Pascal Hersen Micropatterning in Cell Biology Part C, 121, Elsevier, pp.155-169, 2014, Methods in Cell Biology, ⟨10.1016/b978-0-12-800281-0.00011-7⟩ Chapitre d'ouvrage hal-03761739v1
Dunes, the Collective Behaviour of Wind and Sand, or: Are Dunes Living Beings? Stéphane Douady,Pascal Hersen Morphogenesis, Springer Berlin Heidelberg, pp.107-118, 2011, ⟨10.1007/978-3-642-13174-5_6⟩ Chapitre d'ouvrage istex hal-03761749v1
Measuring In Vivo Signaling Kinetics in a Mitogen-Activated Kinase Pathway Using Dynamic Input Stimulation Megan Mcclean,Pascal Hersen,Sharad Ramanathan Yeast Genetic Networks, 734, Humana Press, pp.101-119, 2011, Methods in Molecular Biology, ⟨10.1007/978-1-61779-086-7_6⟩ Chapitre d'ouvrage hal-03761745v1
Towards real-time control of gene expression : controlling the hog signaling cascade Jannis Uhlendorf,Samuel Bottani,François Fages,Pascal Hersen,Grégory Batt Russ B. Altman; A. Keith Dunker; Lawrence Hunter; Tiffany A. Murray; Teri E. Klein. Biocomputing 2011, World Scientific, pp.338-349, 2010, ⟨10.1142/9789814335058_0035⟩ Chapitre d'ouvrage hal-03761738v1

Pré-publication, Document de travail (1)

Nonlinear Singular Value Decomposition Beamforming for Ultrasound Imaging of Gas Vesicles Ge Zhang,Mathis Vert,Mohamed Nouhoum,Esteban Rivera,Nabil Haidouret al. 2024 Pré-publication, Document de travail hal-04789574v1

Thèse (1)

Morphogenese et Dynamique des Barchanes Pascal Hersen Dynamique des Fluides [physics.flu-dyn]. Université Paris-Diderot - Paris VII, 2004. Français. ⟨NNT : ⟩ Thèse tel-00008602v1